Auxin production and detection of the gene coding for the Auxin Efflux Carrier (AEC) protein in Paenibacillus polymyxa

Journal of Microbiology

Volumn 46, Issue 3, 2008, Pages 257-264

  Da Mota, Fabio Faria ^a   Gomes, Eliane Aparecida ^b   Seldin, Lucy ^a  

^a FEDERAL UNIVERSITY OF RIO DE JANEIRO   (Brazil)

^b EMBRAPA MILHO E SORGO   (Brazil)

Author keywords

Auxin; Auxin efflux carrier protein; Indole 3 acetic acid; Paenibacillus graminis; Paenibacillus polymyxa

Indexed keywords

BACTERIAL PROTEIN; INDOLEACETIC ACID DERIVATIVE; PHYTOHORMONE;

ARTICLE; BACILLUS; BACTERIAL GENOME; CLASSIFICATION; GENETICS; ISOLATION AND PURIFICATION; MAIZE; METABOLISM; MICROBIOLOGY; PHYLOGENY; PLANT ROOT; SORGHUM;

BACILLUS; BACTERIAL PROTEINS; GENOME, BACTERIAL; INDOLEACETIC ACIDS; PHYLOGENY; PLANT GROWTH REGULATORS; PLANT ROOTS; SOIL MICROBIOLOGY; SORGHUM; ZEA MAYS;

BACILLUS AMYLOLIQUEFACIENS; BACILLUS SUBTILIS; PAENIBACILLUS; PAENIBACILLUS GRAMINIS; PAENIBACILLUS POLYMYXA; RHIZOBIALES; ZEA MAYS;

EID: 46749154768     PISSN: 12258873     EISSN: 12258873     Source Type: Journal    
DOI: 10.1007/s12275-007-0245-x     Document Type: Article

References (46)

1. Arshad, M. and W.T. Frankenberger, Jr. 1998. Plant growth regulating substances in the rhizosphere: microbial production and functions. Adv. Agron. 62, 45-51.
2. Beatty, P.H. and S.E. Jensen. 2002. Paenibacillus polymyxa produces fusaricidin-type antifungal antibiotics active against Leptosphaeria maculans, the causative agent of blackleg disease of canola. Can. J. Microbiol. 48, 159-169.
3. Bent, E. and C.P. Chanway. 2002. Potential for misidentification of a spore-forming Paenibacillus polymyxa isolated as an endophyte by using culture-based methods. Appl. Environ. Microbiol. 68, 4650-4652.
4. Bent, E., S. Tuzun, C.P. Chanway, and S. Enebak. 2001. Alterations in plant growth and in root hormone levels of lodgepole pines inoculated with rhizobacteria. Can. J. Microbiol. 47, 793-800.
5. Besemer, J., A. Lomsadze, and M. Borodovsky. 2001. GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions. Nucleic Acids Res. 29, 2607-2618.
6. Berge, O., M.H. Guinebretière, W. Achouak, P. Normand, and T. Heulin. 2002. Paenibacillus graminis sp. nov. and Paenibacillus odorifer sp. nov., isolated from plant roots, soil and food. Int. J. Syst. Evol. Microbiol. 52, 607-616.
7. Çakmakçi, R., M. Erat, U. Erdoan, and M.F. Dönmez. 2007. The influence of plant growth-promoting rhizobacteria on growth and enzyme activities in wheat and spinach plants. J. Plant Nutr. Soil Sci. 170, 288-295.
8. Chen, X.H., A. Koumoutsi, R. Scholz, A. Eisenreich, K. Schneider, I. Heinemeyer, B. Morgenstern, B. Voss, W.R. Hess, O. Reva, H. Junge, B. Voigt, P.R. Jungblut, J. Vater, R. Sussmuth, H. Liesegang, A. Strittmatter, G. Gottschalk, and R. Borriss. 2007. Comparative analysis of the complete genome sequence of the plant growth-promoting bacterium Bacillus amyloliquefaciens FZB42. Nat. Biotechnol. 25, 1007-1014.
9. Cocking, E.C. 2003. Endophytic colonization of plant roots by nitrogen-fixing bacteria. Plant Soil 252, 169-175.
10. Coelho, M.R.R., F.F. Da Mota, N.P. Carneiro, I.E. Marriel, E. Paiva, A.S. Rosado, and L. Seldin. 2007. Diversity of Paenibacillus spp. in the rhizosphere of four sorghum (Sorghum bicolor) cultivars sown with two contrasting levels of nitrogen fertilizer assessed by rpo-based PCR-DGGE and sequencing analysis. J. Microbiol. Biotechnol. 17, 753-760.
11. Da Mota, F.F., A. Nóbrega, I.E. Marriel, E. Paiva, and L. Seldin. 2002. Genetic diversity of Paenibacillus polymyxa populations isolated from the rhizosphere of four cultivars of maize (Zea mays) planted in Cerrado soil. Appl. Soil Ecol. 20, 119-132.
12. Da Mota, F.F., E.A. Gomes, E. Paiva, A.S. Rosado, and L. Seldin. 2004. Use of rpoB gene analysis for identification of nitrogen-fixing Paenibacillus species as an alternative to the 16S rRNA gene. Lett. Appl. Microbiol. 39, 34-40.
13. Da Mota, F.F., E.A. Gomes, E. Paiva, and L. Seldin. 2005. Assessment of the diversity of Paenibacillus species by a novel rpoB-based PCR-DGGE method. FEMS Microbiol. Ecol. 52, 317-328.
14. Domenech, J., M.S. Reddy, J.W. Kloepper, B. Ramos, and J. Gutierrez-Manero. 2006. Combined application of the biological product LS213 with Bacillus, Pseudomonas or Chryseobacterium for growth promotion and biological control of soil-borne diseases in pepper and tomato. BioControl 51, 245-258.
15. Gardy, J.L., M.R. Laird, F. Chen, S. Rey, C.J. Walsh, M. Ester, and F.S.L. Brinkman. 2005. PSORTb v.2.0: expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis. Bioinformatics 21, 617-623.
16. Gordon, S.A. and R.P. Weber. 1951. Colorimetric estimation of indole acetic acid. Plant Physiol. 26, 192-195.
17. Holl, F.B. and C.P. Chanway. 1992. Rhizosphere colonization and seedling growth promotion of lodgepole pine by Bacillus polymyxa. Can. J. Microbiol. 30, 303-308.
18. Holl, F.B., C.P. Chanway, R. Turkington, and R.A. Radley. 1988. Response of crested wheatgrass (Agropyron cristatum L.), perenial ryegrass (Lolium perenne L.) and white clover (Trifolium repens L.) to inoculation with Bacillus polymyxa. Soil Biol. Biochem. 20, 19-24.
19. Idris, E.E., D.J. Iglesias, M. Talon, and R. Borriss. 2007. Tryptophan-dependent production of Indole-3-Acetic Acid (IAA) affects level of plant growth promotion by Bacillus amyloliquefaciens FZB42. Mol. Plant Microbe Interact. 20, 619-626.
20. T. J. Microbiol. Biotechnol. 16, 1650-1655.
21. Lambrecht, M., Y. Okon, A.V. Broek, and J. Vanderleyden. 2000. Indole-3-acetic acid: a reciprocal signaling molecule in bacteria-plant interactions. Trends Microbiol. 8, 298-300.
22. Larsen, T.S. and A. Krogh. 2003. EasyGene-a prokaryotic gene finder that ranks ORFs by statistical significance. BMC Bioinformatics 4, 21.
23. Lebuhn, M., T. Heulin, and A. Hartmann. 1997. Production of auxin and other indolic and phenolic compounds by Paenibacillus polymyxa strains isolated from different proximity to plant roots. FEMS Microbiol. Ecol. 22, 325-334.
24. Maor, R., S. Haskin, H. Levi-Kedmi, and A. Sharon. 2004. In planta production of indole-3-acetic acid by Colletotrichum gloeosporioides f. sp. Aeschynamene. Appl. Environ. Microbiol. 70, 1852-1854.
25. Nassar, A.H., K.A. El-Tarabily, and K. Sivasithamparam. 2005. Promotion of plant growth by an auxin-producing isolate of the yeast Williopsis saturnus endophytic in maize (Zea mays L.) roots. Biol. Fertil. Soils 42, 97-108.
26. Nielsen, P. and J. Sorensen. 1997. Multi-target and medium independent fungal antagonisms by hydrolytic enzymes in Paenibacillus polymyxa and Bacillus pumilus strains from barley rhizosphere. FEMS Microbiol. Ecol. 22, 183-192.
27. Patten, C.L. and B.R. Glick. 1996. Bacterial biosynthesis of indole-3-acetic acid. Can. J. Microbiol. 42, 207-220.
28. Petersen, D.J., M. Srinivasan, and C.P. Chanway. 1996. Bacillus polymyxa stimulates increased Rhizobium etli populations and nodulation when co-resident in the rhizosphere of Phaseolus vulgaris. FEMS Microbiol. Lett. 142, 271-276.
29. Rossi, W., A. Grappelli, and W. Pietrosanti. 1984. Phytohormones in soil after atrazine application. Folia Microbiol. 29, 325-329.
30. Ryu, C.M., C.H. Hu, R.D. Locy, and J.W. Kloepper. 2005. Study of mechanisms for plant growth promotion elicited by rhizobacteria in Arabidopsis thaliana. Plant Soil 268, 285-292.
31. Sambrook, J., E.F. Fritsch, and T. Maniatis. 1989. Molecular cloning: A laboratory manual. Cold Spring Harbor Laboratory Press, New York, NY, USA.
32. Seldin, L. and D. Dubnau. 1985. DNA homology among Bacillus polymyxa, Bacillus macerans, Bacillus azotofixans, and others nitrogen-fixing Bacillus strains. Int. J. Syst. Bacteriol. 35, 151-154.
33. Seldin, L., J.D. Van Elsas, and E.G.C. Penido. 1984. Bacillus azotofixans sp. nov., a nitrogen-fixing species from brazilian soils and grass roots. Int. J. Syst. Bacteriol. 34, 451-456.
34. Selim, S., J. Negrel, C. Govaerts, S. Gianinazzi, and D. Van Tuinen. 2005. Isolation and partial characterization of antagonistic peptides produced by Paenibacillus sp. strain B2 isolated from the sorghum mycorrhizosphere. Appl. Environ. Microbiol. 71, 6501-6507.
35. Shishido, M., C. Breuil, and C.P. Chanway. 1999. Endophytic colonization of spruce by plant growth-promoting rhizobacteria. FEMS Microbiol. Ecol. 29, 191-196.
36. Spaepen, S., J. Vanderleyden, and R. Remans. 2007. Indole-3-acetic acid in microbial and microorganism-plant signaling. FEMS Microbiol. Rev. 31, 425-448.
37. Tang, Y.W. and J. Bonner. 1947. The enzymatic inactivation of indoleacetic acid. I. Some characteristics of the enzyme contained in pea seedlings. Arch. Biochem. 13, 11-25.
38. Thompson, J.D., T.J. Gibson, F. Plewniak, F. Jeanmougin, and D.G. Higgins. 1997. The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25, 4876-4882.
39. Timmusk, S., N. Grantcharova, and E.G. Wagner. 2005. Paenibacillus polymyxa invades plant roots and forms biofilms. Appl. Environ. Microbiol. 71, 7292-7300.
40. Timmusk, S. and E.G.H. Wagner. 1999. The plant-growth-promoting rhizobacterium Paenibacillus polymyxa induces changes in Arabidopsis thaliana gene expression: a possible connection between biotic and abiotic stress responses. Mol. Plant-Microbe Interact. 12, 951-959.
41. Tusnády, G.E. and I. Simon. 2001. The HMMTOP transmembrane topology prediction server. Bioinformatics 17, 849-850.
42. Vandeputte, O., S. Oden, A. Mol, D. Vereeke, K. Goethals, M. Jaziri, and E. Prinsen. 2005. Biosynthesis of auxin by the Grampositive phytopathogen Rhodococcus fascians is controlled by compounds specific to infected plant tissues. Appl. Environ. Microbiol. 71, 1169-1177.
43. Vollú, R.E., R. Fogel, S.C.C. Santos, F.F. Da Mota, and L. Seldin. 2006. Evaluation of the diversity of cyclodextrin-producing Paenibacillus graminis strains by different molecular methods. J. Microbiol. 44, 591-599.
44. Von Der Weid, I., V. Artursson, L. Seldin, and J.K. Jansson. 2005. Antifungal and root surface colonization properties of GFP-tagged Paenibacillus brasilensis PB177. World J. Microbiol. Biotech. 21, 1591-1597.
45. Von Der Weid, I., G.F. Duarte, J.D. Van Elsas, and L. Seldin. 2002. Paenibacillus brasilensis sp. nov., a novel nitrogen-fixing species isolated from the maize rhizosphere in Brazil. Int. J. Syst. Evol. Microbiol. 52, 2147-2153.
46. Von Der Weid, I., E. Paiva, A. Nóbrega, J.D. Van Elsas, and L. Seldin. 2000. Diversity of Paenibacillus polymyxa strains isolated from the rhizosphere of maize planted in Cerrado soil. Res. Microbiol. 151, 369-381.