메뉴 건너뛰기




Volumn 95, Issue 1, 2008, Pages 54-65

Modeling analytical ultracentrifugation experiments with an adaptive space-time finite element solution for multicomponent reacting systems

Author keywords

[No Author keywords available]

Indexed keywords

BIOPOLYMER;

EID: 46749141705     PISSN: 00063495     EISSN: 15420086     Source Type: Journal    
DOI: 10.1529/biophysj.107.123950     Document Type: Article
Times cited : (50)

References (23)
  • 2
    • 24144485161 scopus 로고    scopus 로고
    • Modeling analytical ultracentrifugation experiments with an adaptive space-time finite element solution of the Lamm equation
    • Cao, W., and B. Demeler. 2005. Modeling analytical ultracentrifugation experiments with an adaptive space-time finite element solution of the Lamm equation. Biophys. J. 89:1589-1602.
    • (2005) Biophys. J , vol.89 , pp. 1589-1602
    • Cao, W.1    Demeler, B.2
  • 3
    • 0016753958 scopus 로고
    • Sedimentation of generalized systems of interacting particles. II. Active enzyme centrifugation - theory and extensions of its validity range
    • Claverie, J.-M., H. Dreux, and R. Cohen. 1975. Sedimentation of generalized systems of interacting particles. II. Active enzyme centrifugation - theory and extensions of its validity range. Biopolymers. 14:1701-1716.
    • (1975) Biopolymers , vol.14 , pp. 1701-1716
    • Claverie, J.-M.1    Dreux, H.2    Cohen, R.3
  • 4
    • 0008566463 scopus 로고
    • General solution to the inverse problem of the differential equation of the ultracentrifuge
    • Todd, G. P., and R. H. Haschemeyer. 1981. General solution to the inverse problem of the differential equation of the ultracentrifuge. Proc. Natl. Acad. Sci. USA. 78:6739-6743.
    • (1981) Proc. Natl. Acad. Sci. USA , vol.78 , pp. 6739-6743
    • Todd, G.P.1    Haschemeyer, R.H.2
  • 5
    • 1642368109 scopus 로고    scopus 로고
    • Analysis of heterologous interacting systems by sedimentation velocity: Curve fitting algorithms for estimation of sedimentation coefficients, equilibrium and kinetic constants
    • Stafford, W. F., and P. J. Sherwood. 2004. Analysis of heterologous interacting systems by sedimentation velocity: curve fitting algorithms for estimation of sedimentation coefficients, equilibrium and kinetic constants. Biophys. Chem. 108:231-243.
    • (2004) Biophys. Chem , vol.108 , pp. 231-243
    • Stafford, W.F.1    Sherwood, P.J.2
  • 6
    • 0031688168 scopus 로고    scopus 로고
    • Sedimentation analysis of noninteracting and self-associating solutes using numerical solutions to the Lamm equation
    • Schuck, P. 1998. Sedimentation analysis of noninteracting and self-associating solutes using numerical solutions to the Lamm equation. Biophys. J. 75:1503-1512.
    • (1998) Biophys. J , vol.75 , pp. 1503-1512
    • Schuck, P.1
  • 7
    • 0024198745 scopus 로고
    • An analysis of some classes of Petrov-Galerkin methods and optimal test functions methods
    • Resources. M. A. Celia, et al, editors. Elsevier Science, New York
    • Bouloutas, E. T., and M. A. Celia. 1988. An analysis of some classes of Petrov-Galerkin methods and optimal test functions methods. In Proceedings of the 7th International Conference on Computational Methods in Water Resources. M. A. Celia, et al., editors. Elsevier Science, New York. 15-20.
    • (1988) Proceedings of the 7th International Conference on Computational Methods in Water , pp. 15-20
    • Bouloutas, E.T.1    Celia, M.A.2
  • 8
    • 0025639748 scopus 로고
    • An Eulerian-Lagrangian localized adjoint method for the advection-diffusion equation
    • Celia, M. A., T. F. Russell, I. Herrera, and R. E. Ewing. 1990. An Eulerian-Lagrangian localized adjoint method for the advection-diffusion equation. Adv. Water Resour. 13:187-206.
    • (1990) Adv. Water Resour , vol.13 , pp. 187-206
    • Celia, M.A.1    Russell, T.F.2    Herrera, I.3    Ewing, R.E.4
  • 9
    • 0001518684 scopus 로고
    • On the construction and comparison of different schemes
    • Strang, G. 1968. On the construction and comparison of different schemes. SIAM J. Numer. Anal. 5:506-517.
    • (1968) SIAM J. Numer. Anal , vol.5 , pp. 506-517
    • Strang, G.1
  • 10
    • 34548266220 scopus 로고    scopus 로고
    • Proc. 2006 ACM/IEEE SC Conf
    • 0-7695-2700-0/06
    • Brookes, E., Boppana, R. V., and B. Demeler, 2006. Computing large sparse multivariate optimization problems with an application in biophysics. Proc. 2006 ACM/IEEE SC Conf. 0-7695-2700-0/06.
    • (2006)
    • Brookes, E.1    Boppana, R.V.2    Demeler, B.3
  • 11
    • 33749430638 scopus 로고    scopus 로고
    • Genetic algorithm optimization for obtaining accurate molecular weight distributions from sedimentation velocity experiments
    • C. Wandrey and H. Cölfen, editors. Springer, New York
    • Brookes, E., and B. Demeler. 2006. Genetic algorithm optimization for obtaining accurate molecular weight distributions from sedimentation velocity experiments. In Analytical Ultracentrifugation VIII, Progress in Colloid Polymer Science. C. Wandrey and H. Cölfen, editors. Springer, New York.
    • (2006) Analytical Ultracentrifugation VIII, Progress in Colloid Polymer Science
    • Brookes, E.1    Demeler, B.2
  • 12
    • 34548101735 scopus 로고    scopus 로고
    • Brookes, E., and B. Demeler. 2007. Parsimonious regularization using genetic algorithms applied to the analysis of analytical ultracentrifugation experiments. GECCO Proc. ACM. 978-1-59593-697-4/07/0007.
    • Brookes, E., and B. Demeler. 2007. Parsimonious regularization using genetic algorithms applied to the analysis of analytical ultracentrifugation experiments. GECCO Proc. ACM. 978-1-59593-697-4/07/0007.
  • 13
    • 38649117291 scopus 로고    scopus 로고
    • Monte Carlo analysis of sedimentation experiments
    • In press
    • Demeler, B., and E. Brookes. 2008. Monte Carlo analysis of sedimentation experiments. Colloid Polym. Sci. In press.
    • (2008) Colloid Polym. Sci
    • Demeler, B.1    Brookes, E.2
  • 14
    • 0347635285 scopus 로고    scopus 로고
    • Operator-splitting procedures for reactive transport and comparison of mass balance errors
    • Carrayrou, J., R. Mosé, and P. Behra. 2004. Operator-splitting procedures for reactive transport and comparison of mass balance errors. J. Contam. Hydrol. 68:239-268.
    • (2004) J. Contam. Hydrol , vol.68 , pp. 239-268
    • Carrayrou, J.1    Mosé, R.2    Behra, P.3
  • 15
    • 0033571420 scopus 로고    scopus 로고
    • Analysis of operator splitting for advection-diffusion-reaction problems from air pollution modeling
    • Lanser, D., and J. W. Verwer. 1999. Analysis of operator splitting for advection-diffusion-reaction problems from air pollution modeling. J. Comput. Appl. Math. 111:201-216.
    • (1999) J. Comput. Appl. Math , vol.111 , pp. 201-216
    • Lanser, D.1    Verwer, J.W.2
  • 16
    • 0006855782 scopus 로고
    • Theory of moving boundary electrophoresis of reversibly interacting systems. Reaction of proteins with small uncharged molecules such as undissociated buffer acid
    • Cann, J. R., and W. B. Goad. 1965. Theory of moving boundary electrophoresis of reversibly interacting systems. Reaction of proteins with small uncharged molecules such as undissociated buffer acid. J. Biol. Chem. 240:148-155.
    • (1965) J. Biol. Chem , vol.240 , pp. 148-155
    • Cann, J.R.1    Goad, W.B.2
  • 17
    • 0000703559 scopus 로고    scopus 로고
    • An optimal-order estimate for Eulerian-Lagrangian localized adjoint methods for variable-coefficient advection-reaction problems
    • Ewing, R. E., and H. Wang. 1996. An optimal-order estimate for Eulerian-Lagrangian localized adjoint methods for variable-coefficient advection-reaction problems. SIAM J. Numer. Anal. 33:318-348.
    • (1996) SIAM J. Numer. Anal , vol.33 , pp. 318-348
    • Ewing, R.E.1    Wang, H.2
  • 18
    • 0035280404 scopus 로고    scopus 로고
    • A summary of numerical methods for time-dependent advection-dominated partial differential equations
    • Ewing, R. E., and H. Wang. 2001. A summary of numerical methods for time-dependent advection-dominated partial differential equations. J. Comput. Appl. Math. 128:423-445.
    • (2001) J. Comput. Appl. Math , vol.128 , pp. 423-445
    • Ewing, R.E.1    Wang, H.2
  • 20
    • 0021494519 scopus 로고
    • Approximate symmetrization and Petrov-Galerkin methods for diffusion-convection problems
    • Barrett, J. W., and K. W. Morton. 1984. Approximate symmetrization and Petrov-Galerkin methods for diffusion-convection problems. Comput. Methods Appl. Mech. Eng. 45:97-122.
    • (1984) Comput. Methods Appl. Mech. Eng , vol.45 , pp. 97-122
    • Barrett, J.W.1    Morton, K.W.2
  • 23
    • 85031363355 scopus 로고    scopus 로고
    • Demeler, B. 2007. UltraScan: a comprehensive data analysis software package for analytical ultracentrifugation experiments. Ver. 9.4
    • Demeler, B. 2007. UltraScan: a comprehensive data analysis software package for analytical ultracentrifugation experiments. Ver. 9.4. http://www.ultrascan.uthscsa.edu.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.