5S rDNA characterization in twelve Sciaenidae fish species (Teleostei, Perciformes): Depicting gene diversity and molecular markers

Genetics and Molecular Biology

Volumn 31, Issue 1 SUPPL. 1, 2008, Pages 303-307

  Alves Costa, Fernanda A ^a   Martins, Cesar ^a   de Matos, Fernanda Del Campos ^a   Foresti, Fausto ^a   Oliveira, Claudio ^a   Wasko, Adriane Pinto ^a  

^a SÃO PAULO STATE UNIVERSITY UNESP   (Brazil)

Author keywords

5S rDNA; Fish; Isopisthus parvipinnis; Molecular markers; Sciaenidae

Indexed keywords

DNA 5S; GENOMIC DNA; MOLECULAR MARKER;

ANIMAL TISSUE; ARTICLE; CONTROLLED STUDY; DNA HYBRIDIZATION; FISH GENETICS; GENE CLUSTER; GENETIC ANALYSIS; GENETIC VARIABILITY; ISOPISTHUS PARVIPINNIS; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PERCIFORMES; PHYLOGENY; POLYACRYLAMIDE GEL ELECTROPHORESIS; POLYMERASE CHAIN REACTION; SCIAENIDAE; SOUTHERN BLOTTING; SPECIES DIFFERENCE; TELEOST;

ISOPISTHUS PARVIPINNIS; PERCIFORMES; SCIAENIDAE; TELEOSTEI;

EID: 46649119082     PISSN: 14154757     EISSN: 16784685     Source Type: Journal    
DOI: 10.1590/s1415-47572008000200025     Document Type: Article

References (33)

1. Aguirre WE and Shervette VR (2005) Morphological diversity of the Cynoscion group (Perciformes, Sciaenidae) in the Gulf of Guayaquil region, Ecuador: A comparative approach. Environ Biol Fish 73:403-413.
2. Altschul SF, Gish W, Miller W, Myers EW and Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-410.
3. Céspedes A, Garcia T, Carrera E, Gonzalez I, Fernandez A, Hernández PE and Martin R (1999) Identification of sole (Solea solea) and greenland halibut (Reinhardtius hippoglossoides) by PCR amplification of the 5S rDNA gene. J Agric Food Chem 47:1046-1050.
4. Chao NL and Musick JA (1977) Early life history, functional morphology and feeding habits Sciaenidae of York River, Virginia. Fish Bull 75:657-702.
5. Chao NL (1978) A basis for classifying Western Atlantic Sciaenidae (Teleostei, Perciformes). NMFS Technical Reports 415:1-64.
6. Cordes JF and Graves JE (2003) Investigation of congeneric hybridization in and stock structure of weakfish (Cynoscion regalis) inferred from analyses of nuclear and mitochondrial DNA loci. Fish Bull 101:443-450.
7. Felsenstein J (1985) Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783-791.
8. Gold JR, Burridge CP and Turner TF (2001) A modified stepping-stone model of population structure in red drum, Sciaenops ocellatus (Sciaenidae), from the northern Gulf of Mexico. Genetica 111:305-317.
9. Kimura M (1980) A simple method for estimating evolutionary rate of base substitution through comparative studies of nucleotide sequences. J Mol Evol 16:111-120.
10. Komiya H and Takemura S (1979) Nucleotide sequence of 5S ribosomal RNA from rainbow trout (Salmo gairdnerii) liver. J Biochem 86:1067-1080.
11. Kumar S, Tamura K and Nei M (2004) MEGA 3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5:150-163.
12. Lankford TE, Targett TE and Gaffney PM (1999) Mitochondrial DNA analysis of population structure in the Atlantic croaker, Micropogonias undulates (Perciformes, Sciaenidae). Fish Bull 97:884-890.
13. Leah R, Frederiksen S, Engberg J and Sorensen PD (1990) Nucleotide sequence of a mouse 5S rRNA variant gene. Nucleic Acids Res 18:7441.
14. Long ED and David ID (1980) Repeated genes in eukaryotes. Annu Rev Biochem 49:727-764.
15. Longhurst AR and Pauly D (1987) Ecology of Tropical Ocean. Academic Press Inc., San Diego, 407 pp.
16. Martins C and Galetti Jr PM (1999) Chromosomal localization of 5S rDNA genes in Leporinus fish (Anostomidae, Characiformes). Chrom Res 7:363-367.
17. Martins C and Galetti Jr PM (2001) Two 5S rDNA arrays in Neotropical fish species: Is it a general rule for fishes? Genetica 111:439-446.
18. Martins C and Wasko AP (2004) Organization and evolution of 5S ribosomal DNA in the fish genome. In: Williams CR (ed) Focus on Genome Research. Nova Science Publishers, Hauppauge, pp 289-318.
19. Nelson DW and Honda BM (1985) Genes coding for 5S ribosomal RNA of the nematode Caenorhabditis elegans. Gene 38:245-251.
20. Nelson JS (1994) Fishes of the World. 3rd ed. John Wiley & Sons Inc., New York, 600 pp.
21. O'Malley KG, Abbey CA, Ross K and Gold JR (2003) Microsatellite DNA markers for kinship analysis and genetic mapping in red drum, Sciaenops ocellatus (Sciaenidae, Teleostei). Mol Ecol Notes 3:155-158.
22. Pendás AM, Morán P, Martínez JL and Garcia-Vásquez E (1995) Applications of 5S rDNA in Atlantic salmon, brown trout, and in Atlantic salmon x brown trout hybrid identification. Mol Ecol 4:275-276.
23. Sadjak SL, Reed KM and Phillips RB (1998) Intraindividual and interspecies variation in the 5S rDNA of coregonid fish. J Mol Evol 46:680-688.
24. Santos S, Schneider H and Sampaio I (2003) Genetic differentiation of Macrodon ancylodon (Sciaenidae, Perciformes) populations in Atlantic coastal waters of South America as revealed by mtDNA analysis. Genet Mol Biol 26:151-161.
25. Sasaki K (1989) Phylogeny of the family Sciaenidae, with notes on its zoogeography (Teleostei, Perciformes). Mem Fac Fish Hokkaido Univ 36:1-137.
26. Sasaki K (1996) Sciaenid fishes of the Indian Ocean (Teleostei, Perciformes). Mem Fac Sci Kochi Univ Ser D (Biol) 16/17:83-95.
27. Schwarzhans W (1993) A Comparative Morphological Treatise of Recent and Fossil Otoliths of the Family Sciaenidae (Perciformes), Piscium Catalogus: Part Otolothi Piscium, v. 1. Verlag Dr. Friedrich Pfeil, München, 245 pp.
28. Southern EM (1975) Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol 98:503-517.
29. Thompson JD, Higgins DG and Gibson TJ (1994) Clustal W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680.
30. Turner TF, Richardson LR and Gold JR (1998) Polymorphic microsatellite DNA markers in red drum (Sciaenops ocellatus). Mol Ecol 7:1771-1788.
31. Vinson C, Gomes G, Schneider H and Sampaio I (2004) Sciaenidae fish of the Caeté River estuary, northern Brazil: Mitochondrial DNA suggests explosive radiation for the Western Atlantic assemblage. Genet Mol Biol 27:174-180.
32. Wasko AP, Martins C, Wright JM and Galetti Jr PM (2001) Molecular organization of 5S rDNA in fishes of the genus Brycon. Genome 44:893-902.
33. Wasko AP, Martins C, Oliveira C and Foresti F (2003) Non-destructive genetic sampling in fish, an improvement method for DNA extraction from fish fins and scales. Hereditas 138:161-165.