Influenza A virus informatics: Genotype-centered database and genotype annotation

Proceedings - 2nd International Multi-Symposiums on Computer and Computational Sciences, IMSCCS'07

Volumn , Issue , 2007, Pages 76-83

  Lu, Guoqing ^a   Buyyani, Kashi ^a   Goty, Naresh ^a   Donis, Ruben ^b   Chen, Zhengxin ^a  

^a UNIVERSITY OF NEBRASKA AT OMAHA   (United States)

^b CENTERS FOR DISEASE CONTROL AND PREVENTION   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ABSTRACT LEVELS; APPLIED (CO); AVIAN INFLUENZA (AI); COMPUTATIONAL SCIENCES; GENOME SEQUENCING; GENOTYPING; HUMAN LIFE; IN ORDER; INFLUENZA A; INFLUENZA A VIRUS; INFLUENZA PANDEMICS; INFORMATICS; INTERNATIONAL (CO); RETRIEVAL (MIR); SCIENTIFIC LITERATURE; TEXT MINING TECHNIQUES; TEXT-MINING; VIRUS STRAINS;

DATA MINING; DATABASE SYSTEMS; INFORMATION ANALYSIS; INFORMATION RETRIEVAL; INFORMATION SCIENCE; INFORMATION SERVICES; KETONES; MINING; MINING ENGINEERING; SEARCH ENGINES;

VIRUSES;

EID: 46449139259     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/IMSCCS.2007.4392583     Document Type: Conference Paper

References (15)

1. D. Morens, G. Folkers, and A. Fauci, "The challenge of emerging and re-emerging infectious diseases," Nature, vol. 242-249, pp. 242-249, 2004.
2. I. Stephenson and J. Democratis, "Influenza: current threat from avian influenza," Br Med Bull, vol. 75-76, pp. 63-80, 2005.
3. S. B. Muzaffar, R. C. Ydenberg, and I. L. Jones, "Avian Influenza: An Ecological and Evolutionary Perspective for Waterbird Scientists," Waterbirds, vol. 29, pp. 243-257, 2006.
4. A. Moya, E. C. Holmes, and F. Gonzalez-Candelas, "The population genetics and evolutionary epidemiology of RNA viruses," Nat Rev Microbiol, vol. 2, pp. 279-88, 2004.
5. R. A. Fouchier, V. Munster, A. Wallensten, T. M. Bestebroer, S. Herfst, D. Smith, G. F. Rimmelzwaan, B. Olsen, and A. D. Osterhaus, " Characterization of a novel influenza A virus hemagglutinin subtype (H16) obtained from black-headed gulls," J Virol, vol. 79, pp. 2814-22, 2005.
6. H. Chen, G. Deng, Z. Li, G. Tian, Y. Li, P. Jiao, L. Zhang, Z. Liu, R. G. Webster, and K. Yu, "The evolution of H5N1 influenza viruses in ducks in southern China," Proc Natl Acad Sci US A, vol. 101, pp. 10452-7, 2004.
7. T. F. Hatchette, D. Walker, C. Johnson, A. Baker, S. P. Pryor, and R. G. Webster, "Influenza A viruses in feral Canadian ducks: extensive reassortment in nature," J Gen Virol, vol. 85, pp. 2327-37, 2004.
8. S. Chang, J. Zhang, X. Liao, X. Zhu, D. Wang, J. Zhu, T. Feng, B. Zhu, G. F. Gao, J. Wang, H. Yang, J. Yu, and J. Wang, "Influenza Virus Database (IVDB): an integrated information resource and analysis platform for influenza virus research," Nucleic Acids Res, 2006.
9. M. Rozanov, U. Plikat, C. Chappey, A. Kochergin, and T. Tatusova, "A web-based genotyping resource for viral sequences," Nucleic Acids Res, vol. 32, pp. W654-9, 2004.
10. G. Lu, T. Rowley, R. Garten, and R. O. Donis, "FluGenome: a web tool for genotyping influenza A virus," Nucleic Acids Res.doi:10.1093/nar/ gkm365, 2007.
11. K. R. Buyyani, "Development of a consolidated database of influenza viruses," in Department of Computer Science, vol. M.Sc. Omaha: University of Nebraska at Omaha, 2006, pp. 89.
12. C. J. van Rijsbergen, S. E. Robertson, and M. F. Porter, "New models in probabilistic information retrieval," London: British Library, 1980.
13. Y. Peng, N. Yan, G. Kou, Z. Chen, and Y. Shi, "Document clustering in antimicrobial peptides research," Proc. AMCI, 2005.
14. K. B. Chohen, O. Bodenreider, and L. Hirschman, Linking biomedical information through text mining, Pacific Symposium on Biocomputing 11:1-111, 2006.
15. P. Zweigenbaum, D. Demner-Fushman, H. Yu, and K. B. Cohen, "New frontiers in biomedical text mining," Pacific Symposium on Bocomputing, vol. 12, pp. 205-339, 2007.