Construction of a Populus tremuloides Michx. BAC library

Silvae Genetica

Volumn 57, Issue 2, 2008, Pages 65-69

  Fladung, Matthias ^a   Kaufmann, H ^a,b   Markussen, T ^a   Hoenicka, H ^a  

^a Federal Research Centre for Forestry and Forest Products   (Germany)

^b LEIBNIZ UNIVERSITY HANNOVER   (Germany)

Author keywords

Aspen; Bacterial Artificial Chromosome; Genome size; Populus

Indexed keywords

BAC LIBRARIES; GENOME SIZES; HAPLOID GENOMES; INSERT SIZE; RANDOM SAMPLING;

BACTERIA (MICROORGANISMS); POPULUS; POPULUS TREMULA; POPULUS TREMULOIDES;

CLONING;

ASPEN; BAC LIBRARY; BACTERIAL ARTIFICIAL CHROMOSOMES; GENOME EQUIVALENT; GENOME SIZES; HAPLOID GENOME; INSERT SIZE; POPULUS; POPULUS TREMULOIDES; RANDOM SAMPLING;

GENES;

EID: 46449084406     PISSN: 00375349     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (27)

1. ALLOUIS, S., X. QI, M. D. GALE and K. M. DEVOS (2001): Construction of a BAC library of pearl millet, Pennisetum glaucum. Theor. Appl. Genet. 102: 1200-1205.
2. BHALERAO, R., O. Nilsson and G. Sandberg (2003): Out of the woods: forest biotechnology enters the genomic era. Curr. Opin. Biotechnol. 14: 206-213.
3. BRAATNE, J. H. (1999): Biological aspects of hybrid poplar cultivation on floodplains in western North America. Prepared for U.S. EPA (Region 10), Seattle, WA, Document No. 910-R-99-002.
4. CERVERA, M. T., M. M. SEWELL, P. FAIVRE- RAMPANT, V. STORME and W. BOERJAN (2004): Genome mapping in Populus. In: KUMAR, S., FLADUNG, M. (Eds) Molecular Genetics and Breeding of Forest Trees. The Haworth Press, Binghamton, 387-410.
5. CERVERA, M. T., V. STORME, B. IVENS, J. GUSMÃO, B. H. LIU, V. HOSTYN, J. VAN SLYCKEN, M. VAN MONTAGU and W. BOERJAN (2001): Dense genetic linkage maps of three Populus species (Populus deltoides, P. nigra and P. trichocarpa) based on AFLP and microsatellite markers. Genetics 158: 787-809.
6. CLARKE, L. and J. CARBON (1976): A colony bank containing synthetic Col EI hybrid plasmids representative of the entire E. coli genome. Cell 9: 91-99.
7. DICKMAN, D. I. and K. W. STUART (1983): The Culture of Poplars in Eastern North America. Department of Forestry Publications, Michigan State University, East Lansing, Michigan.
8. FAIVRE RAMPANT, P., L. BATAILLE, A. BRESSON, N. BOUDET, B. CHALHOUB, V. JORGE, A. DOWKIW, V. GUERIN, J. P. MASLE, M. VILLAR and C. BASTIEN (2006): Genetic and Physical mapping of a genetic factor involving in partial rust resistance in Populus trichocarpa. IV International Poplar Symposium, Nanjing, China.
9. GRATTAPAGLIA, D. (2004): Integrating genomics into Eucalyptus breeding. Genet. Mol. Res. 3: 369-379.
10. KAUFMANN, H., L. MATTIESCH, H. LÖRZ and T. DEBENER (2003): Construction of a BAC library of Rosa rugosa Thunb. And assembly of a contig spanning Rdr1, a gene that confers resistance to blackspot. Mol. Genet. Genomics 268: 666-674.
11. KIM, U. J., B. W. BIRREN, T. SLEPAK, V. MANCINO, D. BOYSEN, H. L. KANG, M. I. SIMON and H. SHIZUYA (1996): Construction and characterization of a human bacterial artificial chromosome library. Genomics 34: 213-218.
12. NOIR, S., S. PATHEYRON, M. C. COMBES, P. LASHERMES and B. CHALHOUB (2004): Construction and characterisation of a BAC library for genome analysis of the allotetraploid coffee species (Coffea arabica L.). Theor. Appl. Genet. 109: 225-230.
13. PATOCCHI, A., B. A. VINATZER, L. GIANFRANCESCI, S. TARTARINI, H. B. ZHANG, S. SANSAVINI and C. GESSLER (1999): Construction of a 550-kb BAC contig spanning the genomic region containing the apple scab resistance gene Vf. Mol. Genet. Genomics 262: 884-891.
14. PETERSON, D. G., J. P. TOMKINS, D. A. FRISCH, R. A. WING and A. H. PATERSON (2000): Construction of plant bacterial artificial chromosome (BAC) libraries: an illustrated guide. JAG 5: www.ncgr.org/research/jag.
15. nd Edn, Cold Spring Harbour Laboratory Press, New York.
16. STETTLER, R. F., H. D. BRADSHAW, P. E. HEILMAN and T. M. HINCKLEY (1996): Biology of Populus: Implications for management and conservation. National Research Council of Canada, Ottawa.
17. STIRLING, B., G. NEWCOMBE, J. VREBALOV, I. Bosdet and H. D. BRADSHAW (2001): Suppressed recombination around the MXC3 locus, a major gene for resistance to poplar leaf rust. Theor. Appl. Genet. 103: 1129-1137.
18. STRONG, S. J., Y. OHTA, G. W. LITMAN and C. T. AMEMIYA (1997): Marked improvement of PAC and BAC cloning is achieved using electroelution of pulsed-field gel-separated partial digests of genomic DNA. Nucleic Acids Res. 25: 3959-3961.
19. TOMKINS, J. P., D. G. PETERSON, T. J. YANG, D. MAIN, E. F. ABLETT, R. J. HENRY, L. S. LEE, T. A. HOLTON, D. WATERS and R. A. WING (2001): Grape (Vitis vinifera L.) BAC library construction, preliminary STC analysis, and identification of clones associated with flavonoid and stilbene biosynthesis. Amer. J. Enomol. Viticult. 52: 287-291.
20. VILANOVA, S., C. ROMERO, D. ABERNATHY, A. G. ABBOTT, L. BURGOS, G. LLACER and M. L. BADENES (2003): Construction and application of a bacterial artificial chromosome (BAC) library of Prunus armeniaca L. for the identification of clones linked to the self-incompatibility locus. Mol. Genet. Genomics 269: 685-691.
21. VINATZER, B. A., H. B. ZHANG and S. SANSAVINI (1998): Construction and characterization of a bacterial artificial chromosome library of apple. Theor. Appl. Genet. 97: 1183-1190.
22. WANG, W., W. ZHAI, M. LUO, G. JIANG, X. CHEN, X. LI, R. A. WING and L. ZHU (2001): Chromosome landing at the bacterial blight resistance gene Xa4 locus using a deep coverage rice BAC library. Mol. Genet. Genomics 265: 118-125.
23. XU, M. L., J. Q. SONG, Z. K. CHENG, J. M. JIANG and S. S. KORBAN (2001): A bacterial artificial chromosome (BAC) library of Malus floribunda 821 and contig construction for positional cloning of the apple scab resistance gene Vf. Genome 44: 1104-1113.
24. YIN, T. M., M. R. HUANG, M. X. WANG, L. H. ZHU, Z. B. ZENG and R. L. WU (2001): Preliminary interspecific genetic maps of the Populus genome constructed from RAPD markers. Genome 44: 602-609.
25. YIN, T. M., X. Y. ZHANG, M. R. HUANG, M. X. WANG, Q. ZHUGE, S. M. TU, L. H. ZHU and R. L. WU (2002): Molecular linkage maps of the Populus genome. Genome 45: 541-555.
26. YOKOYA, K., A. V. ROBERTS, J. MOTTLEY, R. LEWIS and P. E. BRANDHAM (2000): Nuclear DNA amounts in roses. Ann. Bot. 85: 557-561.
27. ZHU, H. and R. A. DEAN (1999): A novel method for increasing the transformation efficiency of E. coli - application for bacterial artificial chromosome library construction. Nucleic Acids Res. 27: 910-912.