Changes in structure and stability of calbindin-D28K upon calcium binding

Analytical Biochemistry

Volumn 334, Issue 1, 2004, Pages 97-105

  Venyaminov, Sergei Yu ^a   Klimtchuk, Elena S ^a   Bajzer, Zeljko ^a   Craig, Theodore A ^b  

^a MAYO GRADUATE SCHOOL   (United States)

^b MAYO CLINIC   (United States)

Author keywords

Far UV circular dichroism spectra; Fluorescence; Near UV circular dichroism spectra; Secondary structure; Temperature denaturation

Indexed keywords

BINDING SITES; CALCIUM; DICHROISM; FLUORESCENCE; FLUORESCENCE SPECTROSCOPY; PROTEINS; THERMODYNAMIC STABILITY; TITRATION;

ASSOCIATION CONSTANT; NEAR UV; PROTEIN THERMOSTABILITIES; SECONDARY STRUCTURES; TEMPERATURE DENATURATION; TERTIARY STRUCTURES; THERMODYNAMICAL PROPERTIES; UV CIRCULAR DICHROISM;

CIRCULAR DICHROISM SPECTROSCOPY;

AROMATIC COMPOUND; CALBINDIN; CALCIUM;

ARTICLE; BINDING SITE; CALCIUM BINDING; CIRCULAR DICHROISM; DENATURATION; ENTHALPY; FLUORESCENCE SPECTROSCOPY; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN INTERACTION; PROTEIN STABILITY; PROTEIN STRUCTURE; THERMODYNAMICS; THERMOSTABILITY; TITRIMETRY; ULTRAVIOLET RADIATION;

EID: 4644319667     PISSN: 00032697     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ab.2004.07.032     Document Type: Article

References (62)

1. M.R. Celio, and A.W. Norman Nucleus basalis Meynert neurons contain the vitamin D-induced calcium-binding protein (Calbindin-D 28k) Anat. Embryol. (Berl.) 173 1985 143 148
2. M.R. Celio, L. Scharer, J.H. Morrison, A.W. Norman, and F.E. Bloom Calbindin immunoreactivity alternates with cytochrome c-oxidase-rich zones in some layers of the primate visual cortex Nature 323 1986 715 717
3. S. Enderlin, A.W. Norman, and M.R. Celio Ontogeny of the calcium binding protein calbindin D-28k in the rat nervous system Anat. Embryol. (Berl.) 177 1987 15 28
4. M.R. Celio Calbindin D-28k and parvalbumin in the rat nervous system Neuroscience 35 1990 375 475
5. 3 receptor onto genesis in fetal renal development Am. J. Physiol. 269 1995 419 428
6. 28K and the plasma membrane calcium pump in the human eye Curr. Eye Res. 14 1995 101 108
7. 28K in the cornea and ciliary body of the rat eye Ophthal. Res. 27 1995 42 47
8. J.A. Johnson, J.P. Grande, A.J. Windebank, and R. Kumar 1,25-Dihydroxyvitamin D(3) receptors in developing dorsal root ganglia of fetal rats Brain Res. Dev. Brain Res. 92 1996 120 124
9. 28k gene Proc. Natl. Acad. Sci. USA 94 1997 1488 1493
10. S. Christakos, C. Gabrielides, and W.B. Rhoten Vitamin D-dependent calcium binding proteins: chemistry, distribution, functional considerations, and molecular biology Endocr. Rev. 10 1989 3 26
11. M. Gross, and R. Kumar Physiology and biochemistry of vitamin D-dependent calcium binding proteins Am. J. Physiol. 259 1990 195 209
12. ++ adenosine triphosphatase pump recognize an epitope in the basolateral membrane of human kidney distal tubule cells J. Clin. Invest. 80 1987 1225 1231
13. 2+ ATPase and vitamin D-dependent 28-kDa-calcium binding protein Kidney Int. 34 1988 262 267
14. J.L. Borke, A. Caride, A. Verma, J.T. Penniston, and R. Kumar Plasma membrane calcium pump and 28-kDa calcium binding protein in cells of rat kidney distal tubules Am. J. Physiol. 257 1989 842 849
15. 2(+)-pump epitopes in rat intestine Pflugers Arch. 417 1990 120 122
16. J.L. Borke, J.T. Penniston, and R. Kumar Recent advances in calcium transport by the kidney Semin. Nephrol. 10 1990 15 23
17. R.H. Wasserman, J.S. Chandler, S.A. Meyer, C.A. Smith, M.E. Brindak, C.S. Fullmer, J.T. Penniston, and R. Kumar Intestinal calcium transport and calcium extrusion processes at the basolateral membrane J. Nutr. 122 1992 662 671
18. R.H. Wasserman, C.A. Smith, M.E. Brindak, N. De Talamoni, C.S. Fullmer, J.T. Penniston, and R. Kumar Vitamin D and mineral deficiencies increase the plasma membrane calcium pump of chicken intestine Gastroenterology 102 1992 886 894
19. 28k, and parvalbumin in Purkinje cells of avian and mammalian cerebellum Proc. Natl. Acad. Sci. USA 90 1993 11949 11953
20. J.A. Johnson, and R. Kumar Renal and intestinal calcium transport: roles of vitamin D and vitamin D-dependent calcium binding proteins Semin. Nephrol. 14 1994 119 128
21. 28K in human and rat pancreas Am. J. Physiol. 267 1994 356 360
22. 28k gene expression Endocrinology 124 1989 1582 1584
23. H. Enomoto, G.N. Hendy, G.K. Andrews, and T.L. Clemens Regulation of avian calbindin D-28k gene expression in primary chick kidney cells: importance of posttranscriptional mechanisms Endocrinology 130 1992 3467 3474
24. Y.C. Li, A.E. Pirro, and M.B. Demay Analysis of vitamin D-dependent calcium-binding protein messenger ribonucleic acid expression in mice lacking the vitamin D receptor Endocrinology 139 1998 847 851
25. R.H. Wasserman, R.A. Corradino, and A.N. Taylor Vitamin D-dependent calcium-binding protein. Purification and some properties J. Biol. Chem. 243 1968 3978 3986
26. R.H. Wasserman, and A.N. Taylor Vitamin D-dependent calcium-binding protein. Response to some physiological and nutritional variables J. Biol. Chem. 243 1968 3987 3993
27. J.J. Feher, and R.H. Wasserman Calcium absorption and intestinal calcium-binding protein: quantitative relationship Am. J. Physiol. 236 1979 556 561
28. T. Bellido, M. Huening, M. Raval-Pandya, S.C. Manolagas, and S. Christakos Calbindin-D28k is expressed in osteoblastic cells and suppresses their apoptosis by inhibiting caspase-3 activity J. Biol. Chem. 275 2000 26328 26332
29. D.M. Szebenyi, S.K. Obendorf, and K. Moffat Structure of vitamin D dependent calcium-binding protein from bovine intestine Nature 294 1981 327 332
30. D.M. Szebenyi, and K. Moffat The refined structure of vitamin D-dependent calcium-binding protein from bovine intestine. Molecular details, ion binding, and implications for the structure of other calcium-binding proteins J. Biol. Chem. 261 1986 8761 8777
31. M.D. Gross, G.L. Nelsestuen, and R. Kumar Observations on the binding of lanthanides and calcium to vitamin D-dependent chick intestinal calcium-binding protein. Implications regarding calcium-binding protein function J. Biol. Chem. 262 1987 6539 6545
32. W.S. Hunziker, and S. Schrickel Rat brain calbindin D28: six domain structure and extensive amino acid homology with chicken calbindin D28 Mol. Endocrinol. 2 1988 465 473
33. M. Gross, B. Sykes, and R. Kumar Molecular cellular and clinical endocrinology A.W. Norman K. Schaefer H.-G. Grigoleit D. Herrath Vitamin D 1988 de Gruyter Berlin 545 546
34. S. Forsen, S. Linse, E. Thulin, B. Lindegard, S.R. Martin, P.M. Bayley, P. Brodin, and T. Grundstrom Kinetics of calcium binding to calbindin mutants Eur. J. Biochem. 177 1988 47 52
35. 28k as assessed by spectroscopic analyses of synthetic peptide fragments Biochemistry 35 1996 3662 3669
36. L.M. Benson, R. Kumar, J.S. Cavanagh, and S. Naylor Protein-metal ion interaction, stoichiometries and relative affinities determined by on-line size exclusion gel filtration mass spectrometry Rapid Commun. Mass Spectrom. 17 2003 267 271
37. T.D. Veenstra, M. Gross, W. Hunziker, and R. Kumar Identification of metal-binding sites in rat brain calcium- binding protein J. Biol. Chem. 270 1995 30353 30358
38. 28K by electrospray ionization mass spectrometry Biochemistry 36 1997 3535 3542
39. T.D. Veenstra, J.A. Johnson, A.J. Tomlinson, R. Kumar, and S. Naylor Correlation of fluorescence and circular dichroism spectroscopy with electrospray ionization mass spectrometry in the determination of tertiary conformational changes in calcium-binding proteins Mass Spectrom. 12 1998 613 619
40. J.A. Johnson, T.D. Veenstra, J.M. Londowski, A.J. Tomlinson, R. Kumar, and S. Naylor On-line sample clean-up and chromatography coupled with electrospray ionization mass spectrometry to characterize the primary sequence and disulfide bond content of recombinant calcium binding proteins Biomed. Chromatogr. 13 1999 37 45
41. 28k: a nuclear magnetic resonance and microelectrospray mass spectrometry study Anal. Biochem. 317 2003 59 66
42. 2+ ion concentration by metal chelators A. Schwartz Methods in Pharmacology vol. 5 1984 Plenum Press New York 63 75
43. H. Akaike An information criterion (AIC) Math. Sci. 14 1976 5 9
44. G. Schwarz Estimating the dimension of the model Ann. Statist. 6 1978 461 464
45. D. Buckwitz, and H.G. Holzhüter A new method to discriminate between enzyme-kinetic models Computers Math. Appl. 20 1990 117 126
46. M. Davidan, and A.R. Gallant The nonlinear mixed effects model with random smooth effects density Biometrika 80 1993 475 478
47. S. Zwanzig The choice of approximate models on non-linear regression Math. Opsforsch. Statist. Ser. Statist. 11 1980 23 47
48. N. Sreerama, and R.W. Woody Estimation of protein secondary structure from circular dichroism spectra: comparison of CONTIN, SELCON, and CDSSTR methods with an expanded reference set Anal. Biochem. 287 2000 252 260
49. N. Sreerama, S.Yu. Venyaminov, and R.W. Woody Estimation of the number of α-helical and β-strand segments in proteins using circular dichroism spectroscopy Protein Sci. 8 1999 370 380
50. S.W. Provencher, and J. Glöckner Estimation of protein secondary structure from circular dichroism Biochemistry 20 1981 33 37
51. I.H.M. van Stokkum, H.J.W. Spoelder, M.R. Bloemendal, R. van Grondelle, and F.C.A. Groen Estimation of protein secondary structure and error analysis from circular dichroism spectra Anal. Biochem. 291 1991 110 118
52. W.C Johson Jr. Analyzing protein circular dichroism spectra for accurate secondary structures Proteins: Struct. Funct. Genet. 35 1999 307 312
53. S.Yu. Venyaminov, and K.S. Vassilenko Determination of protein tertiary structure class from circular dichroism spectra Anal. Biochem. 222 1994 176 184
54. N. Sreerama, S.Yu. Venyaminov, and R.W. Woody Estimation of protein secondary structure from circular dichroism spectra: inclusion of denatured proteins with native proteins in the analysis Anal. Biochem. 287 2000 243 251
55. L. Jaenicke A rapid micromethod for the determination of nitrogen and phosphate in biological material Anal. Biochem. 61 1974 623 627
56. 28k as determined from the association of six synthetic EF-hand fragments Protein Sci. 6 1997 2385 2396
57. 28k Protein Sci. 9 2000 2094 2108
58. 28k Biochemistry 39 2000 6864 6873
59. P.L. Privalov Stability of proteins (small globular proteins) C.B. Anfinsen J.T. Edsall F.M. Richards Advances in Protein Chemistry vol. 33 1979 Academic Press New York 167 241
60. H. Brzeska, S.Yu. Venyaminov, Z. Grabarek, and W. Drabikowski Comparative studies on thermostability of calmodulin, skeletal muscle troponin C and their tryptic fragments FEBS Lett. 153 1983 169 173
61. M.C. Moncrieffe, S.Yu. Venyaminov, T.E. Miller, G. Guzman, J.D. Potter, and F.G. Prendergast Optical spectroscopic characterization of single tryptophan mutants of chicken skeletal troponin C: evidence for interdomain interaction Biochemistry 38 1999 11973 11983
62. H. Brzeska, S.Yu. Venyaminov, and W. Drabikowski Studies on calmodulin structure using its tryptic fragments F.L. Siegel E. Carafoli R.M. Kretsinger D.H. MacLennan R.H. Wasserman Calcium-Binding Proteins: Structure and Function 1980 Elsevier Amsterdam-New York 207 209