-
1
-
-
0031961672
-
Lactose repressor protein: Functional properties and structure
-
Matthews, K. S., and Nichols, J. C. (1998) Lactose repressor protein: Functional properties and structure, Prog. Nucleic Acid Res. Mol. Biol. 58, 127-164.
-
(1998)
Prog. Nucleic Acid Res. Mol. Biol.
, vol.58
, pp. 127-164
-
-
Matthews, K.S.1
Nichols, J.C.2
-
2
-
-
0026058176
-
Dimer-to-tetramer assembly of lac repressor involves a leucine heptad repeat
-
Alberti, S., Oehler, S., von Wilcken-Bergmann, B., Krämer, H., and Müller-Hill, B. (1991) Dimer-to-tetramer assembly of lac repressor involves a leucine heptad repeat, New Biol. 3, 57-62.
-
(1991)
New Biol.
, vol.3
, pp. 57-62
-
-
Alberti, S.1
Oehler, S.2
Von Wilcken-Bergmann, B.3
Krämer, H.4
Müller-Hill, B.5
-
3
-
-
0027297241
-
Genetic analysis of the leucine heptad repeats of Lac repressor: Evidence for a 4-helical bundle
-
Alberti, S., Oehler, S., von Wilcken-Bergmann, B., and Müller-Hill, B. (1993) Genetic analysis of the leucine heptad repeats of Lac repressor: Evidence for a 4-helical bundle, EMBO J. 12, 3227-3236.
-
(1993)
EMBO J.
, vol.12
, pp. 3227-3236
-
-
Alberti, S.1
Oehler, S.2
Von Wilcken-Bergmann, B.3
Müller-Hill, B.4
-
4
-
-
0026071355
-
Evidence for leucine zipper motif in lactose repressor protein
-
Chakerian, A. E., Tesmer, V. M., Manly, S. P., Brackett, J. K., Lynch, M. J., Hoh, J. T., and Matthews, K. S. (1991) Evidence for leucine zipper motif in lactose repressor protein, J. Biol. Chem. 266, 1371-1374.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 1371-1374
-
-
Chakerian, A.E.1
Tesmer, V.M.2
Manly, S.P.3
Brackett, J.K.4
Lynch, M.J.5
Hoh, J.T.6
Matthews, K.S.7
-
5
-
-
0026723976
-
Deletion of lactose repressor carboxyl-terminal domain affects tetramer formation
-
Chen, J., and Matthews, K. S. (1992) Deletion of lactose repressor carboxyl-terminal domain affects tetramer formation, J. Biol. Chem. 267, 13843-13850.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 13843-13850
-
-
Chen, J.1
Matthews, K.S.2
-
6
-
-
0028218387
-
Construction of a dimeric repressor: Dissection of subunit interfaces in lac repressor
-
Chen, J., Surendran, R., Lee, J. C., and Matthews, K. S. (1994) Construction of a dimeric repressor: Dissection of subunit interfaces in lac repressor, Biochemistry 33, 1234-1241.
-
(1994)
Biochemistry
, vol.33
, pp. 1234-1241
-
-
Chen, J.1
Surendran, R.2
Lee, J.C.3
Matthews, K.S.4
-
7
-
-
0028059578
-
Subunit dissociation affects DNA binding in a dimeric lac repressor produced by C-terminal deletion
-
Chen, J., and Matthews, K. S. (1994) Subunit dissociation affects DNA binding in a dimeric lac repressor produced by C-terminal deletion, Biochemistry 33, 8728-8735.
-
(1994)
Biochemistry
, vol.33
, pp. 8728-8735
-
-
Chen, J.1
Matthews, K.S.2
-
8
-
-
0034089394
-
A closer view of the conformation of the lac repressor bound to operator
-
Bell, C. E., and Lewis, M. (2000) A closer view of the conformation of the lac repressor bound to operator, Nat. Struct. Biol. 7, 209-214.
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 209-214
-
-
Bell, C.E.1
Lewis, M.2
-
10
-
-
0035850794
-
Structure of a variant of lac repressor with increased thermostability and decreased affinity for operator
-
Bell, C. E., Barry, J., Matthews, K. S., and Lewis, M. (2001) Structure of a variant of lac repressor with increased thermostability and decreased affinity for operator, J. Mol. Biol. 313, 99-109.
-
(2001)
J. Mol. Biol.
, vol.313
, pp. 99-109
-
-
Bell, C.E.1
Barry, J.2
Matthews, K.S.3
Lewis, M.4
-
11
-
-
0016745534
-
Interaction of effecting ligands with lac repressor and repressor-operator complex
-
Barkley, M. D., Riggs, A. D., Jobe, A., and Bourgeois, S. (1975) Interaction of effecting ligands with lac repressor and repressor-operator complex, Biochemistry 14, 1700-1712.
-
(1975)
Biochemistry
, vol.14
, pp. 1700-1712
-
-
Barkley, M.D.1
Riggs, A.D.2
Jobe, A.3
Bourgeois, S.4
-
12
-
-
0041624350
-
Catalysing new reactions during evolution: Economy of residues and mechanism
-
Bartlett, G. J., Borkakoti, N., and Thornton, J. M. (2003) Catalysing new reactions during evolution: Economy of residues and mechanism, J. Mol. Biol. 331, 829-860.
-
(2003)
J. Mol. Biol.
, vol.331
, pp. 829-860
-
-
Bartlett, G.J.1
Borkakoti, N.2
Thornton, J.M.3
-
13
-
-
0036074510
-
Protein-DNA interactions: Amino acid conservation and the effects of mutations on binding specificity
-
Luscombe, N. M., and Thornton, J. M. (2002) Protein-DNA interactions: Amino acid conservation and the effects of mutations on binding specificity, J. Mol. Biol. 320, 991-1009.
-
(2002)
J. Mol. Biol.
, vol.320
, pp. 991-1009
-
-
Luscombe, N.M.1
Thornton, J.M.2
-
14
-
-
0347994117
-
Variability-based sequence alignment identifies residues responsible for functional differences in α and β tubulin
-
Fygenson, D. K., Needleman, D. J., and Sneppen, K. (2004) Variability-based sequence alignment identifies residues responsible for functional differences in α and β tubulin, Protein Sci. 13, 25-31.
-
(2004)
Protein Sci.
, vol.13
, pp. 25-31
-
-
Fygenson, D.K.1
Needleman, D.J.2
Sneppen, K.3
-
15
-
-
54249116230
-
Genetic regulatory mechanisms in the synthesis of proteins
-
Jacob, F., and Monod, J. (1961) Genetic regulatory mechanisms in the synthesis of proteins, J. Mol. Biol. 3, 318-356.
-
(1961)
J. Mol. Biol.
, vol.3
, pp. 318-356
-
-
Jacob, F.1
Monod, J.2
-
18
-
-
2342519701
-
Genetic studies of the lac repressor XV†: 4000 Single amino acid substitutions and analysis of the resulting phenotypes on the basis of the protein structure
-
Suckow, J., Markiewicz, P., Kleina, L. G., Miller, J., Kisters-Woike, B., and Müller-Hill, B. (1996) Genetic studies of the lac repressor XV†: 4000 Single amino acid substitutions and analysis of the resulting phenotypes on the basis of the protein structure, J. Mol. Biol. 261, 509-523.
-
(1996)
J. Mol. Biol.
, vol.261
, pp. 509-523
-
-
Suckow, J.1
Markiewicz, P.2
Kleina, L.G.3
Miller, J.4
Kisters-Woike, B.5
Müller-Hill, B.6
-
19
-
-
0017579545
-
Genetic studies of the lac repressor I. Correlation of mutational sites with specific amino acids residues: Construction of a collinear gene-protein map
-
Miller, J. H., Ganem, D., Lu, P., and Schmitz, A. (1977) Genetic studies of the lac repressor I. Correlation of mutational sites with specific amino acids residues: construction of a collinear gene-protein map, J. Mol. Biol. 109, 275-301.
-
(1977)
J. Mol. Biol.
, vol.109
, pp. 275-301
-
-
Miller, J.H.1
Ganem, D.2
Lu, P.3
Schmitz, A.4
-
20
-
-
0023658610
-
Thermodynamic analysis of inducer binding to the lactose repressor protein: Contributions of galactosyl hydroxyl groups and beta substituents
-
Chakerian, A. E., Olson, J. S., and Matthews, K. S. (1987) Thermodynamic analysis of inducer binding to the lactose repressor protein: Contributions of galactosyl hydroxyl groups and beta substituents, Biochemistry 26, 7250-7255.
-
(1987)
Biochemistry
, vol.26
, pp. 7250-7255
-
-
Chakerian, A.E.1
Olson, J.S.2
Matthews, K.S.3
-
21
-
-
0023893799
-
Regulation of the lactose repressor
-
Chakerian, A. E., and Matthews, K. S. (1988) Regulation of the lactose repressor, Int. J. Biochem. 20, 493-498.
-
(1988)
Int. J. Biochem.
, vol.20
, pp. 493-498
-
-
Chakerian, A.E.1
Matthews, K.S.2
-
22
-
-
0023055763
-
Allosteric regulation of inducer and operator binding to the lactose repressor
-
Daly, T. J., and Matthews, K. S. (1986) Allosteric regulation of inducer and operator binding to the lactose repressor, Biochemistry 25, 5479-5484.
-
(1986)
Biochemistry
, vol.25
, pp. 5479-5484
-
-
Daly, T.J.1
Matthews, K.S.2
-
23
-
-
0017289631
-
Kinetic studies of inducer binding to lactose repressor protein
-
Friedman, B. E., Olson, J. S., and Matthews, K. S. (1976) Kinetic studies of inducer binding to lactose repressor protein, J. Biol. Chem. 251, 1171-1174.
-
(1976)
J. Biol. Chem.
, vol.251
, pp. 1171-1174
-
-
Friedman, B.E.1
Olson, J.S.2
Matthews, K.S.3
-
24
-
-
0017376038
-
Fluorescence and ultraviolet spectral studies of lac repressor modified with N-bromosuccinimide
-
O'Gorman, R. B., and Matthews, K. S. (1977) Fluorescence and ultraviolet spectral studies of lac repressor modified with N-bromosuccinimide, J. Biol. Chem. 252, 3572-3577.
-
(1977)
J. Biol. Chem.
, vol.252
, pp. 3572-3577
-
-
O'Gorman, R.B.1
Matthews, K.S.2
-
25
-
-
0019321818
-
DNA binding characteristics of lactose repressor and the trypsin-resistant core repressor
-
O'Gorman, R. B., Dunaway, M., and Matthews, K. S. (1980) DNA binding characteristics of lactose repressor and the trypsin-resistant core repressor, J. Biol. Chem. 255, 10100-10106.
-
(1980)
J. Biol. Chem.
, vol.255
, pp. 10100-10106
-
-
O'Gorman, R.B.1
Dunaway, M.2
Matthews, K.S.3
-
26
-
-
0019321843
-
Equilibrium binding of inducer to lac repressor-operator DNA complex
-
O'Gorman, R. B., Rosenberg, J. M., Kallai, O. B., Dickerson, R. E., Itakura, K., Riggs, A. D., and Matthews, K. S. (1980) Equilibrium binding of inducer to lac repressor-operator DNA complex, J. Biol. Chem. 255, 10107-10114.
-
(1980)
J. Biol. Chem.
, vol.255
, pp. 10107-10114
-
-
O'Gorman, R.B.1
Rosenberg, J.M.2
Kallai, O.B.3
Dickerson, R.E.4
Itakura, K.5
Riggs, A.D.6
Matthews, K.S.7
-
27
-
-
0022534281
-
Dissociation of the lactose repressor-operator DNA complex: Effects of size and sequence context of operator-containing DNA
-
Whitson, P. A., and Matthews, K. S. (1986) Dissociation of the lactose repressor-operator DNA complex: Effects of size and sequence context of operator-containing DNA, Biochemistry 25, 3845-3852.
-
(1986)
Biochemistry
, vol.25
, pp. 3845-3852
-
-
Whitson, P.A.1
Matthews, K.S.2
-
28
-
-
0022504599
-
Thermodynamic analysis of the lactose repressor-operator DNA interaction
-
Whitson, P. A., Olson, J. S., and Matthews, K. S. (1986) Thermodynamic analysis of the lactose repressor-operator DNA interaction, Biochemistry 25, 3852-3858.
-
(1986)
Biochemistry
, vol.25
, pp. 3852-3858
-
-
Whitson, P.A.1
Olson, J.S.2
Matthews, K.S.3
-
29
-
-
0014966123
-
lac repressor-operator interaction II. Effect of galactosides and other ligands
-
Riggs, A. D., Newby, R. F., and Bourgeois, S. (1970) lac repressor-operator interaction II. Effect of galactosides and other ligands, J. Mol. Biol. 51, 303-314.
-
(1970)
J. Mol. Biol.
, vol.51
, pp. 303-314
-
-
Riggs, A.D.1
Newby, R.F.2
Bourgeois, S.3
-
30
-
-
0015527295
-
lac repressor-operator interaction. VI. The natural inducer of the lac operon
-
Jobe, A., and Bourgeois, S. (1972) lac repressor-operator interaction. VI. The natural inducer of the lac operon, J. Mol. Biol. 69, 397-408.
-
(1972)
J. Mol. Biol.
, vol.69
, pp. 397-408
-
-
Jobe, A.1
Bourgeois, S.2
-
31
-
-
0023055776
-
Characterization and modification of a monomeric mutant of the lactose repressor protein
-
Daly, T. J., and Matthews, K. S. (1986) Characterization and modification of a monomeric mutant of the lactose repressor protein, Biochemistry 25, 5474-5478.
-
(1986)
Biochemistry
, vol.25
, pp. 5474-5478
-
-
Daly, T.J.1
Matthews, K.S.2
-
32
-
-
0019952363
-
Structure of the DNA-binding region of lac repressor inferred from its homology with cro repressor
-
Matthews, B. W., Ohlendorf, D. H., Andersen, W. F., and Takeda, Y. (1982) Structure of the DNA-binding region of lac repressor inferred from its homology with cro repressor, Proc. Natl. Acad. Sci. U.S.A. 79, 1428-1432.
-
(1982)
Proc. Natl. Acad. Sci. U.S.A.
, vol.79
, pp. 1428-1432
-
-
Matthews, B.W.1
Ohlendorf, D.H.2
Andersen, W.F.3
Takeda, Y.4
-
33
-
-
0027255252
-
Model of lactose repressor core based on alignment with sugar-binding proteins is concordant with genetic and chemical data
-
Nichols, J. C., Vyas, N. K., Quiocho, F. A., and Matthews, K. S. (1993) Model of lactose repressor core based on alignment with sugar-binding proteins is concordant with genetic and chemical data, J. Biol. Chem. 268, 17602-17612.
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 17602-17612
-
-
Nichols, J.C.1
Vyas, N.K.2
Quiocho, F.A.3
Matthews, K.S.4
-
34
-
-
0016817774
-
Amino acid sequence of lac repressor from Escherichia coli: Isolation, sequence analysis and sequence assembly of tryptic peptides and cyanogen-bromide fragments
-
Beyreuther, K., Adler, K., Fanning, E., Murray, C., Klemm, A., and Geisler, N. (1975) Amino acid sequence of lac repressor from Escherichia coli: Isolation, sequence analysis and sequence assembly of tryptic peptides and cyanogen-bromide fragments, Eur. J. Biochem. 59, 491-509.
-
(1975)
Eur. J. Biochem.
, vol.59
, pp. 491-509
-
-
Beyreuther, K.1
Adler, K.2
Fanning, E.3
Murray, C.4
Klemm, A.5
Geisler, N.6
-
35
-
-
0029004903
-
Crystal structure of lac repressor core tetramer and its implications for DNA looping
-
Friedman, A. M., Fischmann, T. O., and Steitz, T. A. (1995) Crystal structure of lac repressor core tetramer and its implications for DNA looping, Science 268, 1721-1727.
-
(1995)
Science
, vol.268
, pp. 1721-1727
-
-
Friedman, A.M.1
Fischmann, T.O.2
Steitz, T.A.3
-
36
-
-
0027426159
-
Structure of the complex of lac repressor headpiece and an 11 base-pair half-operator determined by nuclear magnetic resonance spectroscopy and restrained molecular dynamics
-
Chuprina, V. P., Rullmann, J. A. C., Lamerichs, R. M. J. N., Vanboom, J. H., Boelens, R., and Kaptein, R. (1993) Structure of the complex of lac repressor headpiece and an 11 base-pair half-operator determined by nuclear magnetic resonance spectroscopy and restrained molecular dynamics, J. Mol. Biol. 234, 446-462.
-
(1993)
J. Mol. Biol.
, vol.234
, pp. 446-462
-
-
Chuprina, V.P.1
Rullmann, J.A.C.2
Lamerichs, R.M.J.N.3
Vanboom, J.H.4
Boelens, R.5
Kaptein, R.6
-
37
-
-
0030596509
-
Refined structure of lac repressor headpiece (1-56) determined by relaxation matrix calculations from 2D and 3D NOE data: Change of tertiary structure upon binding to the lac operator
-
Slijper, M., Bonvin, A. M. J. J., Boelens, R., and Kaptein, R. (1996) Refined structure of lac repressor headpiece (1-56) determined by relaxation matrix calculations from 2D and 3D NOE data: Change of tertiary structure upon binding to the lac operator, J. Mol. Biol. 259, 761-773.
-
(1996)
J. Mol. Biol.
, vol.259
, pp. 761-773
-
-
Slijper, M.1
Bonvin, A.M.J.J.2
Boelens, R.3
Kaptein, R.4
-
38
-
-
0037124326
-
1 through alternative conformations of its DNA-binding domain
-
1 through alternative conformations of its DNA-binding domain, EMBO J. 21, 2866-2876.
-
(2002)
EMBO J.
, vol.21
, pp. 2866-2876
-
-
Kalodimos, C.G.1
Bonvin, A.M.2
Salinas, R.K.3
Wechselberger, R.4
Boelens, R.5
Kaptein, R.6
-
39
-
-
0033573062
-
The solution structure of lac repressor headpiece 62 complexed to a symmetrical lac operator
-
Spronk, C. A., Bonvin, A. M., Radha, P. K., Melacini, G., Boelens, R., and Kaptein, R. (1999) The solution structure of lac repressor headpiece 62 complexed to a symmetrical lac operator, Struct. Folding Des. 7, 1483-1492.
-
(1999)
Struct. Folding Des.
, vol.7
, pp. 1483-1492
-
-
Spronk, C.A.1
Bonvin, A.M.2
Radha, P.K.3
Melacini, G.4
Boelens, R.5
Kaptein, R.6
-
40
-
-
0029938053
-
Crystal structure of the lactose operon repressor and its complexes with DNA and inducer
-
Lewis, M., Chang, G., Horton, N. C., Kercher, M. A., Pace, H. C., Schumacher, M. A., Brennan, R. G., and Lu, P. (1996) Crystal structure of the lactose operon repressor and its complexes with DNA and inducer, Science 271, 1247-1254.
-
(1996)
Science
, vol.271
, pp. 1247-1254
-
-
Lewis, M.1
Chang, G.2
Horton, N.C.3
Kercher, M.A.4
Pace, H.C.5
Schumacher, M.A.6
Brennan, R.G.7
Lu, P.8
-
41
-
-
0035108019
-
Plasticity of quaternary structure: Twenty-two ways to form a LacI dimer
-
Swint-Kruse, L., Elam, C. R., Lin, J. W., Wycuff, D. R., and Matthews, K. S. (2001) Plasticity of quaternary structure: Twenty-two ways to form a LacI dimer, Protein Sci. 10, 262-276.
-
(2001)
Protein Sci.
, vol.10
, pp. 262-276
-
-
Swint-Kruse, L.1
Elam, C.R.2
Lin, J.W.3
Wycuff, D.R.4
Matthews, K.S.5
-
42
-
-
0142179045
-
Allosteric transition pathways in the lactose repressor protein core domains: Asymmetric motions in a symmetric homodimer
-
Flynn, T. C., Swint-Kruse, L., Kong, Y., Booth, C., Matthews, K. S., and Ma, J. (2003) Allosteric transition pathways in the lactose repressor protein core domains: Asymmetric motions in a symmetric homodimer, Protein Sci. 12, 2523-2541.
-
(2003)
Protein Sci.
, vol.12
, pp. 2523-2541
-
-
Flynn, T.C.1
Swint-Kruse, L.2
Kong, Y.3
Booth, C.4
Matthews, K.S.5
Ma, J.6
-
43
-
-
0015935189
-
Ultraviolet difference spectra of the lactose repressor protein
-
Matthews, K. S., Matthews, H. R., Theilmann, H. W., and Jardetzky, O. (1973) Ultraviolet difference spectra of the lactose repressor protein, Biochim. Biophys. Acta 295, 159-165.
-
(1973)
Biochim. Biophys. Acta
, vol.295
, pp. 159-165
-
-
Matthews, K.S.1
Matthews, H.R.2
Theilmann, H.W.3
Jardetzky, O.4
-
44
-
-
0021755236
-
Trinitrobenzenesulfonate modification of the lysine residues in lactose repressor protein
-
Whitson, P. A., Burgum, A. A., and Matthews, K. S. (1984) Trinitrobenzenesulfonate modification of the lysine residues in lactose repressor protein, Biochemistry 23, 6046-6052.
-
(1984)
Biochemistry
, vol.23
, pp. 6046-6052
-
-
Whitson, P.A.1
Burgum, A.A.2
Matthews, K.S.3
-
45
-
-
0017392835
-
Modification of tyrosine residues of the lactose repressor protein
-
Alexander, M. E., Burgum, A. A., Noall, R. A., Shaw, M. D., and Matthews, K. S. (1977) Modification of tyrosine residues of the lactose repressor protein, Biochim. Biophys. Acta 493, 367-379.
-
(1977)
Biochim. Biophys. Acta
, vol.493
, pp. 367-379
-
-
Alexander, M.E.1
Burgum, A.A.2
Noall, R.A.3
Shaw, M.D.4
Matthews, K.S.5
-
46
-
-
0029976830
-
Formation of the hinge helix in the lac repressor is induced upon binding to the lac operator
-
Spronk, C. A. E. M., Slijper, M., van Boom, J. H., Kaptein, R., and Boelens, R. (1996) Formation of the hinge helix in the lac repressor is induced upon binding to the lac operator, Nat. Struct. Biol. 3, 916-919.
-
(1996)
Nat. Struct. Biol.
, vol.3
, pp. 916-919
-
-
Spronk, C.A.E.M.1
Slijper, M.2
Van Boom, J.H.3
Kaptein, R.4
Boelens, R.5
-
47
-
-
0027236781
-
Lysine 84 is at the subunit interface of lac repressor protein
-
Chang, W. I., Olson, J. S., and Matthews, K. S. (1993) Lysine 84 is at the subunit interface of lac repressor protein, J. Biol. Chem. 268, 17613-17622.
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 17613-17622
-
-
Chang, W.I.1
Olson, J.S.2
Matthews, K.S.3
-
48
-
-
0030806865
-
Combinatorial mutations of lac repressor: Stability of monomer-monomer interface is increased by apolar substitution at position 84
-
Nichols, J. C., and Matthews, K. S. (1997) Combinatorial mutations of lac repressor: Stability of monomer-monomer interface is increased by apolar substitution at position 84, J. Biol. Chem. 272, 18550-18557.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 18550-18557
-
-
Nichols, J.C.1
Matthews, K.S.2
-
50
-
-
0036127292
-
Fine-tuning function: Correlation of hinge domain interactions with functional distinctions between LacI and PurR
-
Swint-Kruse, L., Larson, C., Pettitt, B. M., and Matthews, K. S. (2002) Fine-tuning function: Correlation of hinge domain interactions with functional distinctions between LacI and PurR, Protein Sci. 11, 778-794.
-
(2002)
Protein Sci.
, vol.11
, pp. 778-794
-
-
Swint-Kruse, L.1
Larson, C.2
Pettitt, B.M.3
Matthews, K.S.4
-
51
-
-
0242720597
-
Uncovering network systems within protein structures
-
Greene, L. H., and Higman, V. A. (2003) Uncovering network systems within protein structures, J. Mol. Biol. 334, 781-791.
-
(2003)
J. Mol. Biol.
, vol.334
, pp. 781-791
-
-
Greene, L.H.1
Higman, V.A.2
-
52
-
-
13044272912
-
Automated analysis of interatomic contacts in proteins
-
Sobolev, V., Sorokine, A., Prilusky, J., Abola, E. E., and Edelman, M. (1999) Automated analysis of interatomic contacts in proteins, Bioinformatics 15, 327-332.
-
(1999)
Bioinformatics
, vol.15
, pp. 327-332
-
-
Sobolev, V.1
Sorokine, A.2
Prilusky, J.3
Abola, E.E.4
Edelman, M.5
-
53
-
-
0031715982
-
Protein structure alignment by incremental combinatorial extension (CE) of the optimal path
-
Shindyalov, I. N., and Bourne, P. E. (1998) Protein structure alignment by incremental combinatorial extension (CE) of the optimal path, Protein Eng. 11, 739-747.
-
(1998)
Protein Eng.
, vol.11
, pp. 739-747
-
-
Shindyalov, I.N.1
Bourne, P.E.2
-
54
-
-
0030824517
-
Ribbons
-
Carson, M. (1997) Ribbons, Methods Enzymol. 277, 493-505.
-
(1997)
Methods Enzymol.
, vol.277
, pp. 493-505
-
-
Carson, M.1
-
55
-
-
1542269057
-
Thermodynamics, protein modification, and molecular dynamics in characterizing lactose repressor protein: Strategies for complex analyses of protein structure-function
-
Swint-Kruse, L., and Matthews, K. S. (2004) Thermodynamics, protein modification, and molecular dynamics in characterizing lactose repressor protein: Strategies for complex analyses of protein structure-function, Methods Enzymol. 397, 188-209.
-
(2004)
Methods Enzymol.
, vol.397
, pp. 188-209
-
-
Swint-Kruse, L.1
Matthews, K.S.2
-
56
-
-
84986512474
-
CHARMM: A program for macromolecular energy, minimization, and dynamics calculations
-
Brooks, B. R., Bruccoleri, R. E., Olafson, B. D., States, D. J., Swaminathan, S., and Karplus, M. (1983) CHARMM: A program for macromolecular energy, minimization, and dynamics calculations, J. Comput. Chem. 4, 187-217.
-
(1983)
J. Comput. Chem.
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
Karplus, M.6
-
57
-
-
0035996767
-
Recent progress in protein 3D structure comparison
-
Carugo, O., and Pongor, S. (2002) Recent progress in protein 3D structure comparison, Curr. Protein Pept. Sci. 3, 441-449.
-
(2002)
Curr. Protein Pept. Sci.
, vol.3
, pp. 441-449
-
-
Carugo, O.1
Pongor, S.2
-
58
-
-
0345102549
-
Conformational changes of ribose-binding protein and two related repressors are tailored to fit the functional need
-
Mowbray, S. L., and Bjorkman, A. J. (1999) Conformational changes of ribose-binding protein and two related repressors are tailored to fit the functional need, J. Mol. Biol. 294, 487-499.
-
(1999)
J. Mol. Biol.
, vol.294
, pp. 487-499
-
-
Mowbray, S.L.1
Bjorkman, A.J.2
-
59
-
-
0022394162
-
A mutant lactose repressor with altered inducer and operator binding parameters
-
Chakerian, A. E., Pfahl, M., Olson, J. S., and Matthews, K. S. (1985) A mutant lactose repressor with altered inducer and operator binding parameters, J. Mol. Biol. 183, 43-51.
-
(1985)
J. Mol. Biol.
, vol.183
, pp. 43-51
-
-
Chakerian, A.E.1
Pfahl, M.2
Olson, J.S.3
Matthews, K.S.4
-
60
-
-
0001031179
-
Proteins: A theoretical perspective of dynamics, structure, and thermodynamics
-
(Prigogine, I., and Rice, S. A., Eds.), John Wiley & Sons, New York
-
Brooks, C. L., III, Karplus, M., and Pettitt, B. M. (1988) Proteins: A theoretical perspective of dynamics, structure, and thermodynamics, in Advances in Chemical Physics (Prigogine, I., and Rice, S. A., Eds.) Vol. 71, p 259, John Wiley & Sons, New York.
-
(1988)
Advances in Chemical Physics
, vol.71
, pp. 259
-
-
Brooks III, C.L.1
Karplus, M.2
Pettitt, B.M.3
-
61
-
-
0031442191
-
Ligand-induced conformational changes in lactose repressor: A fluoresence study of single tryptophan mutants
-
Barry, J. K., and Matthews, K. S. (1997) Ligand-induced conformational changes in lactose repressor: A fluoresence study of single tryptophan mutants, Biochemistry 36, 15632-15642.
-
(1997)
Biochemistry
, vol.36
, pp. 15632-15642
-
-
Barry, J.K.1
Matthews, K.S.2
-
62
-
-
0033596862
-
Substitutions at histidine 74 and aspartate 278 alter ligand binding and allostery in lactose repressor protein
-
Barry, J. K., and Matthews, K. S. (1999) Substitutions at histidine 74 and aspartate 278 alter ligand binding and allostery in lactose repressor protein, Biochemistry 38, 3579-3590.
-
(1999)
Biochemistry
, vol.38
, pp. 3579-3590
-
-
Barry, J.K.1
Matthews, K.S.2
-
63
-
-
0344412958
-
Perturbation from a distance: Mutations that alter LacI function through long-range effects
-
Swint-Kruse, L., Zhan, H., Fairbanks, B. M., Maheshwari, A., and Matthews, K. S. (2003) Perturbation from a distance: Mutations that alter LacI function through long-range effects, Biochemistry 42, 14004-14016.
-
(2003)
Biochemistry
, vol.42
, pp. 14004-14016
-
-
Swint-Kruse, L.1
Zhan, H.2
Fairbanks, B.M.3
Maheshwari, A.4
Matthews, K.S.5
-
64
-
-
0026344978
-
Arginine 197 of lac repressor contributes significant energy to inducer binding: Confirmation of homology to periplasmic sugar binding proteins
-
Spotts, R. O., Chakerian, A. E., and Matthews, K. S. (1991) Arginine 197 of lac repressor contributes significant energy to inducer binding: Confirmation of homology to periplasmic sugar binding proteins, J. Biol. Chem. 266, 22998-23002.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 22998-23002
-
-
Spotts, R.O.1
Chakerian, A.E.2
Matthews, K.S.3
-
65
-
-
0025696011
-
Characterization of two mutant lactose repressor proteins containing single tryptophans
-
Gardner, J. A., and Matthews, K. S. (1990) Characterization of two mutant lactose repressor proteins containing single tryptophans, J. Biol. Chem. 265, 21061-21067.
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 21061-21067
-
-
Gardner, J.A.1
Matthews, K.S.2
-
66
-
-
0029647441
-
Role of Asp274 in lac repressor: Diminished sugar binding and altered conformational effects in mutants
-
Chang, W.-I., and Matthews, K. S. (1995) Role of Asp274 in lac repressor: Diminished sugar binding and altered conformational effects in mutants, Biochemistry 34, 9227-9234.
-
(1995)
Biochemistry
, vol.34
, pp. 9227-9234
-
-
Chang, W.-I.1
Matthews, K.S.2
-
67
-
-
0028226263
-
Identification and characterization of aspartate residues that play key roles in the allosteric regulation of a transcription factor: Aspartate 274 is essential for inducer binding in lac repressor
-
Chang, W.-I., Barrera, P., and Matthews, K. S. (1994) Identification and characterization of aspartate residues that play key roles in the allosteric regulation of a transcription factor: Aspartate 274 is essential for inducer binding in lac repressor, Biochemistry 33, 3607-3616.
-
(1994)
Biochemistry
, vol.33
, pp. 3607-3616
-
-
Chang, W.-I.1
Barrera, P.2
Matthews, K.S.3
|