-
1
-
-
0029557910
-
Computational searching and mutagenesis suggest a structure for the pentameric transmembrane domain of phospholamban
-
Adams, P. D., I. T. Arkin, D. M. Engelman, and A. T. Brunger. 1995. Computational searching and mutagenesis suggest a structure for the pentameric transmembrane domain of phospholamban. Nat. Struct. Biol. 2:154-162.
-
(1995)
Nat. Struct. Biol.
, vol.2
, pp. 154-162
-
-
Adams, P.D.1
Arkin, I.T.2
Engelman, D.M.3
Brunger, A.T.4
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., T. L. Madden, A. A. Schaffer, J. Zhang, Z. Zhang, W. Miller, and D. J. Lipman. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
3
-
-
0031565726
-
An alpha-carbon template for the transmembrane helices in the rhodopsin family of G-protein-coupled receptors
-
Baldwin, J. M., G. F. Schertler, and V. M. Unger. 1997. An alpha-carbon template for the transmembrane helices in the rhodopsin family of G-protein-coupled receptors. J. Mol. Biol. 272:144-164.
-
(1997)
J. Mol. Biol.
, vol.272
, pp. 144-164
-
-
Baldwin, J.M.1
Schertler, G.F.2
Unger, V.M.3
-
4
-
-
4444382786
-
A knowledge-based scale for the analysis and prediction of buried and exposed faces of transmembrane domain proteins
-
Beuming, T., and H. Weinstein. 2004. A knowledge-based scale for the analysis and prediction of buried and exposed faces of transmembrane domain proteins. Bioinformatics. 20:1822-1835.
-
(2004)
Bioinformatics
, vol.20
, pp. 1822-1835
-
-
Beuming, T.1
Weinstein, H.2
-
5
-
-
0034604351
-
Structure. Rhodopsin sees the light
-
Boume, H. R., and E. C. Meng. 2000. Structure. Rhodopsin sees the light. Science. 289:733-734.
-
(2000)
Science
, vol.289
, pp. 733-734
-
-
Boume, H.R.1
Meng, E.C.2
-
6
-
-
0031563818
-
Helix packing in membrane proteins
-
Bowie, J. U. 1997. Helix packing in membrane proteins. J. Mol. Biol. 272:780-789.
-
(1997)
J. Mol. Biol.
, vol.272
, pp. 780-789
-
-
Bowie, J.U.1
-
7
-
-
0033950315
-
Understanding membrane protein structure by design
-
Bowie, J. U. 2000. Understanding membrane protein structure by design. Nat. Struct. Biol. 7:91-94.
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 91-94
-
-
Bowie, J.U.1
-
8
-
-
0035882546
-
A new method to model membrane protein structure based on silent amino acid substitutions
-
Briggs, J. A., J. Torres, and I. T. Arkin. 2001. A new method to model membrane protein structure based on silent amino acid substitutions. Proteins. 44:370-375.
-
(2001)
Proteins
, vol.44
, pp. 370-375
-
-
Briggs, J.A.1
Torres, J.2
Arkin, I.T.3
-
9
-
-
0036893269
-
Transmembrane helix predictions revisited
-
Chen, C. P., A. Kemytsky, and B. Rost. 2002. Transmembrane helix predictions revisited. Protein Sci. 11:2774-2791.
-
(2002)
Protein Sci.
, vol.11
, pp. 2774-2791
-
-
Chen, C.P.1
Kemytsky, A.2
Rost, B.3
-
10
-
-
0027465713
-
Modeling of transmembrane seven helix bundles
-
Cronet, P., C. Sander, and G. Vriend. 1993. Modeling of transmembrane seven helix bundles. Protein Eng. 6:59-64.
-
(1993)
Protein Eng.
, vol.6
, pp. 59-64
-
-
Cronet, P.1
Sander, C.2
Vriend, G.3
-
11
-
-
0036301006
-
Motifs of serine and threonine can drive association of transmembrane helices
-
Dawson, J. P., J. S. Weinger, and D. M. Engelman. 2002. Motifs of serine and threonine can drive association of transmembrane helices. J. Mol. Biol. 316:799-805.
-
(2002)
J. Mol. Biol.
, vol.316
, pp. 799-805
-
-
Dawson, J.P.1
Weinger, J.S.2
Engelman, D.M.3
-
12
-
-
0027497369
-
Modeling alpha-helical transmembrane domains: The calculation and use of substitution tables for lipid-facing residues
-
Donnelly, D., J. P. Overington, S. V. Ruffle, J. H. Nugent, and T. L. Blundell. 1993. Modeling alpha-helical transmembrane domains: the calculation and use of substitution tables for lipid-facing residues. Protein Sci. 2:55-70.
-
(1993)
Protein Sci.
, vol.2
, pp. 55-70
-
-
Donnelly, D.1
Overington, J.P.2
Ruffle, S.V.3
Nugent, J.H.4
Blundell, T.L.5
-
13
-
-
0021691817
-
Analysis of membrane and surface protein sequences with the hydrophobic moment plot
-
Eisenberg, D., E. Schwarz, M. Komaromy, and R. Wall. 1984. Analysis of membrane and surface protein sequences with the hydrophobic moment plot. J. Mol. Biol. 179:125-142.
-
(1984)
J. Mol. Biol.
, vol.179
, pp. 125-142
-
-
Eisenberg, D.1
Schwarz, E.2
Komaromy, M.3
Wall, R.4
-
14
-
-
0019934717
-
The helical hydrophobic moment: A measure of the amphiphilicity of a helix
-
Eisenberg, D., R. M. Weiss, and T. C. Terwilliger. 1982. The helical hydrophobic moment: a measure of the amphiphilicity of a helix. Nature. 299:371-374.
-
(1982)
Nature
, vol.299
, pp. 371-374
-
-
Eisenberg, D.1
Weiss, R.M.2
Terwilliger, T.C.3
-
15
-
-
16344394956
-
Assigning transmembrane segments to helices in intermediate-resolution structures
-
Enosh, A., S. J. Fleishman, N. Ben-Tal, and D. Halperin. 2004. Assigning transmembrane segments to helices in intermediate-resolution structures. Bioinformatics. 20:1122-1129.
-
(2004)
Bioinformatics
, vol.20
, pp. 1122-1129
-
-
Enosh, A.1
Fleishman, S.J.2
Ben-Tal, N.3
Halperin, D.4
-
16
-
-
0032588985
-
Prediction of protein structure to low resolution: Performance for a large and structurally diverse test set
-
Eyrich, V. A., D. M. Standley, and R. A. Friesner. 1999. Prediction of protein structure to low resolution: performance for a large and structurally diverse test set. J. Mol. Biol. 288:725-742.
-
(1999)
J. Mol. Biol.
, vol.288
, pp. 725-742
-
-
Eyrich, V.A.1
Standley, D.M.2
Friesner, R.A.3
-
17
-
-
0026345280
-
An efficient automated computer vision based technique for detection of three dimensional structural motifs in proteins
-
Fischer, D., O. Bachar, R. Nussinov, and H. Wolfson. 1992. An efficient automated computer vision based technique for detection of three dimensional structural motifs in proteins. J. Biomol. Struct. Dyn. 9:769-789.
-
(1992)
J. Biomol. Struct. Dyn.
, vol.9
, pp. 769-789
-
-
Fischer, D.1
Bachar, O.2
Nussinov, R.3
Wolfson, H.4
-
18
-
-
0036382758
-
A novel scoring function for predicting the conformations of tightly packed pairs of transmembrane alpha-helices
-
Fleishman, S. J., and N. Ben-Tal. 2002. A novel scoring function for predicting the conformations of tightly packed pairs of transmembrane alpha-helices. J. Mol. Biol. 321:363-378.
-
(2002)
J. Mol. Biol.
, vol.321
, pp. 363-378
-
-
Fleishman, S.J.1
Ben-Tal, N.2
-
20
-
-
4644228547
-
A C-alpha model for the transmembrane alpha-helices of gap-junction intercellular channels
-
In press
-
Fleishman, S. J., V. M. Unger, M. Yeager, and N. Ben-Tal. 2004. A C-alpha model for the transmembrane alpha-helices of gap-junction intercellular channels. Mol. Cell. In press.
-
(2004)
Mol. Cell.
-
-
Fleishman, S.J.1
Unger, V.M.2
Yeager, M.3
Ben-Tal, N.4
-
21
-
-
0033956331
-
Riding the wave: Structural and energetic principles of helical membrane proteins
-
Fleming, K. G. 2000. Riding the wave: structural and energetic principles of helical membrane proteins. Curr. Opin. Biotechnol. 11:67-71.
-
(2000)
Curr. Opin. Biotechnol.
, vol.11
, pp. 67-71
-
-
Fleming, K.G.1
-
22
-
-
2542445427
-
ConSurf: Identification of functional regions in proteins by surface-mapping of phylogenetic information
-
Glaser, F., T. Pupko, I. Paz, R. E. Bell, D. Bechor-Shental, E. Martz, and N. Ben-Tal. 2003. ConSurf: identification of functional regions in proteins by surface-mapping of phylogenetic information. Bioinformatics. 19:163-164.
-
(2003)
Bioinformatics
, vol.19
, pp. 163-164
-
-
Glaser, F.1
Pupko, T.2
Paz, I.3
Bell, R.E.4
Bechor-Shental, D.5
Martz, E.6
Ben-Tal, N.7
-
23
-
-
0034723156
-
Structural clues in the sequences of the aquaporins
-
Heymann, J. B., and A. Engel. 2000. Structural clues in the sequences of the aquaporins. J. Mol. Biol. 295:1039-1053.
-
(2000)
J. Mol. Biol.
, vol.295
, pp. 1039-1053
-
-
Heymann, J.B.1
Engel, A.2
-
25
-
-
0034493669
-
A triangle lattice model that predicts transmembrane helix configuration using a polar jigsaw puzzle
-
Hirokawa, T., J. Uechi, H. Sasamoto, M. Suwa, and S. Mitaku. 2000. A triangle lattice model that predicts transmembrane helix configuration using a polar jigsaw puzzle. Protein Eng. 13:771-778.
-
(2000)
Protein Eng.
, vol.13
, pp. 771-778
-
-
Hirokawa, T.1
Uechi, J.2
Sasamoto, H.3
Suwa, M.4
Mitaku, S.5
-
26
-
-
0037060464
-
The 3-D structure of microsomal glutathione transferase 1 at 6 A resolution as determined by electron crystallography of p22(1)2(1) crystals
-
Holm, P. J., R. Morgenstern, and H. Hebert. 2002. The 3-D structure of microsomal glutathione transferase 1 at 6 A resolution as determined by electron crystallography of p22(1)2(1) crystals. Biochim. Biophys. Acta. 1594:276-285.
-
(2002)
Biochim. Biophys. Acta
, vol.1594
, pp. 276-285
-
-
Holm, P.J.1
Morgenstern, R.2
Hebert, H.3
-
27
-
-
0000176654
-
Stability of "salt bridges" in membrane proteins
-
Honig, B. H., and W. L. Hubbell. 1984. Stability of "salt bridges" in membrane proteins. Proc. Natl. Acad. Sci. USA. 81:5412-5416.
-
(1984)
Proc. Natl. Acad. Sci. USA
, vol.81
, pp. 5412-5416
-
-
Honig, B.H.1
Hubbell, W.L.2
-
28
-
-
0032817780
-
Helix packing in polytopic membrane proteins: Role of glycine in transmembrane helix association
-
Javadpour, M. M., M. Eilers, M. Groesbeek, and S. O. Smith. 1999. Helix packing in polytopic membrane proteins: role of glycine in transmembrane helix association. Biophys. J. 77:1609-1618.
-
(1999)
Biophys. J.
, vol.77
, pp. 1609-1618
-
-
Javadpour, M.M.1
Eilers, M.2
Groesbeek, M.3
Smith, S.O.4
-
29
-
-
0035906702
-
Bridging the information gap: Computational tools for intermediate resolution structure interpretation
-
Jiang, W., M. L. Baker, S. J. Ludtke, and W. Chiu. 2001. Bridging the information gap: computational tools for intermediate resolution structure interpretation. J. Mol. Biol. 308:1033-1044.
-
(2001)
J. Mol. Biol.
, vol.308
, pp. 1033-1044
-
-
Jiang, W.1
Baker, M.L.2
Ludtke, S.J.3
Chiu, W.4
-
30
-
-
0037198625
-
The open pore conformation of potassium channels
-
Jiang, Y., A. Lee, J. Chen, M. Cadene, B. T. Chait, and R. MacKinnon. 2002. The open pore conformation of potassium channels. Nature. 417:523-526.
-
(2002)
Nature
, vol.417
, pp. 523-526
-
-
Jiang, Y.1
Lee, A.2
Chen, J.3
Cadene, M.4
Chait, B.T.5
MacKinnon, R.6
-
31
-
-
35448950945
-
Free energy determinants of peptide association with lipid bilayers
-
S. Simon and T. McIntosh, editors. Academic Press, San Diego, CA
-
Kessel, A., and N. Ben-Tal. 2002. Free energy determinants of peptide association with lipid bilayers. In Current Topics in Membranes. S. Simon and T. McIntosh, editors. Academic Press, San Diego, CA. 205-253.
-
(2002)
Current Topics in Membranes
, pp. 205-253
-
-
Kessel, A.1
Ben-Tal, N.2
-
32
-
-
0038730774
-
A simple method for modeling transmembrane helix oligomers
-
Kim, S., A. K. Chamberlain, and J. U. Bowie. 2003. A simple method for modeling transmembrane helix oligomers. J. Mol. Biol. 329:831-840.
-
(2003)
J. Mol. Biol.
, vol.329
, pp. 831-840
-
-
Kim, S.1
Chamberlain, A.K.2
Bowie, J.U.3
-
33
-
-
0026244229
-
MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
-
Kraulis, P. J. 1991. MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J. Appl. Crystallogr. 24:946-950.
-
(1991)
J. Appl. Crystallogr.
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
-
34
-
-
0026686793
-
Glycophorin A dimerization is driven by specific interactions between transmembrane alpha-helices
-
Lemmon, M. A., J. M. Flanagan, J. F. Hunt, B. D. Adair, B. J. Bormann, C. E. Dempsey, and D. M. Engelman. 1992. Glycophorin A dimerization is driven by specific interactions between transmembrane alpha-helices. J. Biol. Chem. 267:7683-7689.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 7683-7689
-
-
Lemmon, M.A.1
Flanagan, J.M.2
Hunt, J.F.3
Adair, B.D.4
Bormann, B.J.5
Dempsey, C.E.6
Engelman, D.M.7
-
35
-
-
0032546920
-
Proton transfer pathways in bacteriorhodopsin at 2.3 angstrom resolution
-
Luecke, H., H. T. Richter, and J. K. Lanyi. 1998. Proton transfer pathways in bacteriorhodopsin at 2.3 angstrom resolution. Science. 280:1934-1937.
-
(1998)
Science
, vol.280
, pp. 1934-1937
-
-
Luecke, H.1
Richter, H.T.2
Lanyi, J.K.3
-
36
-
-
0030932407
-
A transmembrane helix dimer: Structure and implications
-
MacKenzie, K. R., J. H. Prestegard, and D. M. Engelman. 1997. A transmembrane helix dimer: structure and implications. Science. 276:131-133.
-
(1997)
Science
, vol.276
, pp. 131-133
-
-
MacKenzie, K.R.1
Prestegard, J.H.2
Engelman, D.M.3
-
37
-
-
0030815133
-
Raster3D photorealistic molecular graphics
-
Merritt, E. A., and D. J. Bacon. 1997. Raster3D photorealistic molecular graphics. Methods Enzymol. 277:505-524.
-
(1997)
Methods Enzymol.
, vol.277
, pp. 505-524
-
-
Merritt, E.A.1
Bacon, D.J.2
-
38
-
-
0038112088
-
Structure and gating mechanism of the acetylcholine receptor pore
-
Miyazawa, A., Y. Fujiyoshi, and N. Unwin. 2003. Structure and gating mechanism of the acetylcholine receptor pore. Nature. 424:949-955.
-
(2003)
Nature
, vol.424
, pp. 949-955
-
-
Miyazawa, A.1
Fujiyoshi, Y.2
Unwin, N.3
-
39
-
-
0028283339
-
An algorithm to generate low-resolution protein tertiary structures from knowledge of secondary structure
-
Monge, A., R. A. Friesner, and B. Honig. 1994. An algorithm to generate low-resolution protein tertiary structures from knowledge of secondary structure. Proc. Natl. Acad. Sci. USA. 91:5027-5029.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 5027-5029
-
-
Monge, A.1
Friesner, R.A.2
Honig, B.3
-
40
-
-
0000238336
-
A simplex method for function minimization
-
Nelder, J. A., and R. Mead. 1965. A simplex method for function minimization. Comput. J. 7:308-313.
-
(1965)
Comput. J.
, vol.7
, pp. 308-313
-
-
Nelder, J.A.1
Mead, R.2
-
41
-
-
0034604451
-
Crystal structure of rhodopsin: A G protein-coupled receptor
-
Palczewski, K., T. Kumasaka, T. Hori, C. A. Behnke, H. Motoshima, B. A. Fox, I. Le Trong, D. C. Teller, T. Okada, R. E. Stenkamp, M. Yamamoto, and M. Miyano. 2000. Crystal structure of rhodopsin: a G protein-coupled receptor. Science. 289:739-745.
-
(2000)
Science
, vol.289
, pp. 739-745
-
-
Palczewski, K.1
Kumasaka, T.2
Hori, T.3
Behnke, C.A.4
Motoshima, H.5
Fox, B.A.6
Le Trong, I.7
Teller, D.C.8
Okada, T.9
Stenkamp, R.E.10
Yamamoto, M.11
Miyano, M.12
-
42
-
-
0032932375
-
A potential smoothing algorithm accurately predicts transmembrane helix packing
-
Pappu, R. V., G. R. Marshall, and J. W. Ponder. 1999. A potential smoothing algorithm accurately predicts transmembrane helix packing. Nat. Struct. Biol. 6:50-55.
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 50-55
-
-
Pappu, R.V.1
Marshall, G.R.2
Ponder, J.W.3
-
43
-
-
0037339521
-
Folding in lipid membranes (FILM): A novel method for the prediction of small membrane protein 3D structures
-
Pellegrini-Calace, M., A. Carotti, and D. T. Jones. 2003. Folding in lipid membranes (FILM): a novel method for the prediction of small membrane protein 3D structures. Proteins. 50:537-545.
-
(2003)
Proteins
, vol.50
, pp. 537-545
-
-
Pellegrini-Calace, M.1
Carotti, A.2
Jones, D.T.3
-
44
-
-
0033544689
-
kPROT: A knowledge-based scale for the propensity of residue orientation in transmembrane segments. Application to membrane protein structure prediction
-
Pilpel, Y., N. Ben-Tal, and D. Lancet. 1999. kPROT: a knowledge-based scale for the propensity of residue orientation in transmembrane segments. Application to membrane protein structure prediction. J. Mol. Biol. 294:921-935.
-
(1999)
J. Mol. Biol.
, vol.294
, pp. 921-935
-
-
Pilpel, Y.1
Ben-Tal, N.2
Lancet, D.3
-
45
-
-
0025249842
-
Membrane protein folding and oligomerization: The two-stage model
-
Popot, J. L., and D. M. Engelman. 1990. Membrane protein folding and oligomerization: the two-stage model. Biochemistry. 29:4031-4037.
-
(1990)
Biochemistry
, vol.29
, pp. 4031-4037
-
-
Popot, J.L.1
Engelman, D.M.2
-
46
-
-
0033790343
-
Helical membrane protein folding, stability, and evolution
-
Popot, J. L., and D. M. Engelman. 2000. Helical membrane protein folding, stability, and evolution. Annu. Rev. Biochem. 69:881-922.
-
(2000)
Annu. Rev. Biochem.
, vol.69
, pp. 881-922
-
-
Popot, J.L.1
Engelman, D.M.2
-
47
-
-
0002218484
-
Rate4Site: An algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues
-
Pupko, T., R. E. Bell, I. Mayrose, F. Glaser, and N. Ben-Tal. 2002. Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues. Bioinformatics. 18:571-S77.
-
(2002)
Bioinformatics
, vol.18
-
-
Pupko, T.1
Bell, R.E.2
Mayrose, I.3
Glaser, F.4
Ben-Tal, N.5
-
48
-
-
0024346677
-
Hydrophobic organization of membrane proteins
-
Rees, D. C., L. DeAntonio, and D. Eisenberg. 1989. Hydrophobic organization of membrane proteins. Science. 245:510-513.
-
(1989)
Science
, vol.245
, pp. 510-513
-
-
Rees, D.C.1
DeAntonio, L.2
Eisenberg, D.3
-
49
-
-
0033514311
-
TOXCAT: A measure of transmembrane helix association in a biological membrane
-
Russ, W. P., and D. M. Engelman. 1999. TOXCAT: a measure of transmembrane helix association in a biological membrane. Proc. Natl. Acad. Sci. USA. 96:863-868.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 863-868
-
-
Russ, W.P.1
Engelman, D.M.2
-
50
-
-
0034711953
-
The GxxxG motif: A framework for transmembrane helix-helix association
-
Russ, W. P., and D. M. Engelman. 2000. The GxxxG motif: a framework for transmembrane helix-helix association. J. Mol. Biol. 296:911-919.
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 911-919
-
-
Russ, W.P.1
Engelman, D.M.2
-
51
-
-
0037195088
-
An approach to membrane protein structure without crystals
-
Sorgen, P. L., Y. Hu, L. Guan, H. R. Kaback, and M. E. Girvin. 2002. An approach to membrane protein structure without crystals. Proc. Natl. Acad. Sci. USA. 99:14037-14040.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 14037-14040
-
-
Sorgen, P.L.1
Hu, Y.2
Guan, L.3
Kaback, H.R.4
Girvin, M.E.5
-
52
-
-
0024976405
-
Neu receptor dimerization
-
Sternberg, M. J., and W. J. Gullick. 1989. Neu receptor dimerization. Nature. 339:587.
-
(1989)
Nature
, vol.339
, pp. 587
-
-
Sternberg, M.J.1
Gullick, W.J.2
-
53
-
-
0033167996
-
Are membrane proteins "inside-out" proteins?
-
Stevens, T. J., and I. T. Arkin. 1999. Are membrane proteins "inside-out" proteins? Proteins. 36:135-143.
-
(1999)
Proteins
, vol.36
, pp. 135-143
-
-
Stevens, T.J.1
Arkin, I.T.2
-
54
-
-
0035182559
-
Substitution rates in alpha-helical transmembrane proteins
-
Stevens, T. J., and I. T. Arkin. 2001. Substitution rates in alpha-helical transmembrane proteins. Protein Sci. 10:2507-2517.
-
(2001)
Protein Sci.
, vol.10
, pp. 2507-2517
-
-
Stevens, T.J.1
Arkin, I.T.2
-
55
-
-
0028236332
-
Structure, transmembrane topology and helix packing of P-type ion pumps
-
Stokes, D. L., W. R. Taylor, and N. M. Green. 1994. Structure, transmembrane topology and helix packing of P-type ion pumps. FEBS Lett. 346:32-38.
-
(1994)
FEBS Lett.
, vol.346
, pp. 32-38
-
-
Stokes, D.L.1
Taylor, W.R.2
Green, N.M.3
-
56
-
-
0028175436
-
A method for alpha-helical integral membrane protein fold prediction
-
Taylor, W. R., D. T. Jones, and N. M. Green. 1994. A method for alpha-helical integral membrane protein fold prediction. Proteins. 18:281-294.
-
(1994)
Proteins
, vol.18
, pp. 281-294
-
-
Taylor, W.R.1
Jones, D.T.2
Green, N.M.3
-
57
-
-
1942487807
-
First principles predictions of the structure and function of g-protein-coupled receptors: Validation for bovine rhodopsin
-
Trabanino, R. J., S. E. Hall, N. Vaidehi, W. B. Floriane, V. W. Kam, and W. A. Goddard 3rd. 2004. First principles predictions of the structure and function of g-protein-coupled receptors: validation for bovine rhodopsin. Biophys. J. 86:1904-1921.
-
(2004)
Biophys. J.
, vol.86
, pp. 1904-1921
-
-
Trabanino, R.J.1
Hall, S.E.2
Vaidehi, N.3
Floriane, W.B.4
Kam, V.W.5
Goddard III, W.A.6
-
58
-
-
0033516705
-
The packing density in proteins: Standard radii and volumes
-
Tsai, J., R. Taylor, C. Chothia, and M. Gerstein. 1999. The packing density in proteins: standard radii and volumes. J. Mol. Biol. 290:253-266.
-
(1999)
J. Mol. Biol.
, vol.290
, pp. 253-266
-
-
Tsai, J.1
Taylor, R.2
Chothia, C.3
Gerstein, M.4
-
59
-
-
0027465452
-
Packing and recognition of protein structural elements: A new approach applied to the 4-helix bundle of myohemerythrin
-
Tuffery, P., and R. Lavery. 1993. Packing and recognition of protein structural elements: a new approach applied to the 4-helix bundle of myohemerythrin. Proteins. 15:413-425.
-
(1993)
Proteins
, vol.15
, pp. 413-425
-
-
Tuffery, P.1
Lavery, R.2
-
60
-
-
0032561132
-
Principles governing amino acid composition of integral membrane proteins: Application to topology prediction
-
Tusnady, G. E., and I. Simon. 1998. Principles governing amino acid composition of integral membrane proteins: application to topology prediction. J. Mol. Biol. 283:489-506.
-
(1998)
J. Mol. Biol.
, vol.283
, pp. 489-506
-
-
Tusnady, G.E.1
Simon, I.2
-
61
-
-
0346874401
-
Three-dimensional structure of the bacterial multidrug transporter EmrE shows it is an asymmetric homodimer
-
Ubarretxena-Belandia, I., J. M. Baldwin, S. Schuldiner, and C. G. Tate. 2003. Three-dimensional structure of the bacterial multidrug transporter EmrE shows it is an asymmetric homodimer. EMBO J. 22:6175-6181.
-
(2003)
EMBO J.
, vol.22
, pp. 6175-6181
-
-
Ubarretxena-Belandia, I.1
Baldwin, J.M.2
Schuldiner, S.3
Tate, C.G.4
-
62
-
-
0035367173
-
Helical membrane proteins: Diversity of functions in the context of simple architecture
-
Ubarretxena-Belandia, I., and D. M. Engelman. 2001. Helical membrane proteins: diversity of functions in the context of simple architecture. Curr. Opin. Struct. Biol. 11:370-376.
-
(2001)
Curr. Opin. Struct. Biol.
, vol.11
, pp. 370-376
-
-
Ubarretxena-Belandia, I.1
Engelman, D.M.2
-
63
-
-
0035442391
-
Electron cryomicroscopy methods
-
Unger, V. M. 2001. Electron cryomicroscopy methods. Curr. Opin. Struct. Biol. 11:548-554.
-
(2001)
Curr. Opin. Struct. Biol.
, vol.11
, pp. 548-554
-
-
Unger, V.M.1
-
64
-
-
0030775615
-
Arrangement of rhodopsin transmembrane alpha-helices
-
Unger, V. M., P. A. Margrave, J. M. Baldwin, and G. F. Schertler. 1997. Arrangement of rhodopsin transmembrane alpha-helices. Nature. 389:203-206.
-
(1997)
Nature
, vol.389
, pp. 203-206
-
-
Unger, V.M.1
Margrave, P.A.2
Baldwin, J.M.3
Schertler, G.F.4
-
65
-
-
0033582686
-
Three-dimensional structure of a recombinant gap junction membrane channel
-
Unger, V. M., N. M. Kumar, N. B. Gilula, and M. Yeager. 1999. Three-dimensional structure of a recombinant gap junction membrane channel. Science. 283:1176-1180.
-
(1999)
Science
, vol.283
, pp. 1176-1180
-
-
Unger, V.M.1
Kumar, N.M.2
Gilula, N.B.3
Yeager, M.4
-
66
-
-
0028962270
-
Low resolution structure of bovine rhodopsin determined by electron cryo-microscopy
-
Unger, V. M., and G. F. Schertler. 1995. Low resolution structure of bovine rhodopsin determined by electron cryo-microscopy. Biophys. J. 68:1776-1786.
-
(1995)
Biophys. J.
, vol.68
, pp. 1776-1786
-
-
Unger, V.M.1
Schertler, G.F.2
-
67
-
-
0028921479
-
Acetylcholine receptor channel imaged in the open state
-
Unwin, N. 1995. Acetylcholine receptor channel imaged in the open state. Nature. 373:37-43.
-
(1995)
Nature
, vol.373
, pp. 37-43
-
-
Unwin, N.1
-
68
-
-
0024442722
-
Control of topology and mode of assembly of a polytopic membrane protein by positively charged residues
-
von Heijne, G. 1989. Control of topology and mode of assembly of a polytopic membrane protein by positively charged residues. Nature. 341:456-458.
-
(1989)
Nature
, vol.341
, pp. 456-458
-
-
Von Heijne, G.1
-
69
-
-
0030431744
-
Principles of membrane protein assembly and structure
-
von Heijne, G. 1996. Principles of membrane protein assembly and structure. Prog. Biophys. Mol. Biol. 66:113-139.
-
(1996)
Prog. Biophys. Mol. Biol.
, vol.66
, pp. 113-139
-
-
Von Heijne, G.1
-
70
-
-
0032987478
-
Membrane protein folding and stability: Physical principles
-
White, S. H., and W. C. Wimley. 1999. Membrane protein folding and stability: physical principles. Annu. Rev. Biophys. Biomol. Struct. 28:319-365.
-
(1999)
Annu. Rev. Biophys. Biomol. Struct.
, vol.28
, pp. 319-365
-
-
White, S.H.1
Wimley, W.C.2
-
71
-
-
0742288411
-
The evolution of transmembrane helix kinks and the structural diversity of G protein-coupled receptors
-
Yohannan, S., S. Faham, D. Yang, J. P. Whitelegge, and J. U. Bowie. 2004. The evolution of transmembrane helix kinks and the structural diversity of G protein-coupled receptors. Proc. Natl. Acad. Sci. USA. 101:959-963.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 959-963
-
-
Yohannan, S.1
Faham, S.2
Yang, D.3
Whitelegge, J.P.4
Bowie, J.U.5
-
72
-
-
0035283158
-
Folding of bundles of alpha-helices in solution, membranes, and adsorbed overlayers
-
Zhdanov, V. P., and B. Kasemo. 2001. Folding of bundles of alpha-helices in solution, membranes, and adsorbed overlayers. Proteins. 42:481-494.
-
(2001)
Proteins
, vol.42
, pp. 481-494
-
-
Zhdanov, V.P.1
Kasemo, B.2
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