Effects of axial methionine coordination on the in-plane asymmetry of the heme electronic structure of cytochrome c

Journal of Biological Inorganic Chemistry

Volumn 9, Issue 6, 2004, Pages 733-742

  Tachiiri, Naoki ^a   Hemmi, Hikaru ^b   Takayama, Shin Ichi Joseph ^a   Mita, Hajime ^a   Hasegawa, Jun ^c   Sambongi, Yoshihiro ^d   Yamamoto, Yasuhiko ^a  

^a UNIVERSITY OF TSUKUBA   (Japan)

^b NATIONAL FOOD RESEARCH INSTITUTE   (Japan)

^c DAIICHI SANKYO CO   (Japan)

^d HIROSHIMA UNIVERSITY   (Japan)

Author keywords

Cytochrome c; Heme electronic structure; NMR; Paramagnetic shifts; Paramagnetic susceptibility tensor

Indexed keywords

AMINO ACID; CYANIDE; CYTOCHROME C; CYTOCHROME C552; HEME; METHIONINE; UNCLASSIFIED DRUG;

ARTICLE; HYDROGENOBACTER THERMOPHILUS; MAGNETISM; OXIDATION REDUCTION REACTION; PRIORITY JOURNAL; PROTEIN STRUCTURE; PROTON NUCLEAR MAGNETIC RESONANCE; PSEUDOMONAS AERUGINOSA; THERMOPHILIC BACTERIUM;

CYTOCHROMES C; MAGNETIC RESONANCE SPECTROSCOPY; METHIONINE; MODELS, CHEMICAL; MODELS, MOLECULAR; OXIDATION-REDUCTION; PROTEIN CONFORMATION;

BACTERIA (MICROORGANISMS); HYDROGENOBACTER; HYDROGENOBACTER THERMOPHILUS; PSEUDOMONAS; PSEUDOMONAS AERUGINOSA;

EID: 4644245520     PISSN: 09498257     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00775-004-0569-5     Document Type: Article

References (54)

1. La Mar GN, Satterlee JD, de Ropp JS (2000) In: Kadish KM, Smith KM, Guilard R (eds) The porphyrin handbook, vol 5. Academic Press, San Diego, pp 185-298
2. Bertini I, Luchinat C (1986) NMR of paramagnetic molecules in biological systems. Benjamin/Cummings, Menlo Park, California, pp 19-46
3. Yamamoto Y (1998) Annu Rep NMR Spectrosc 36:1-77
4. Shokhirev NV, Walker FA (1998) J Biol Inorg Chem 3:581-594
5. Shokhirev NV, Walker FA (1998) J Am Chem Soc 120:981-990
6. Walker FA (2000) In: Kadish KM, Smith KM, Guillard R (eds) The porphyrin handbook, vol 5. Academic Press, San Diego, pp 81-183
7. Bertini I, Luchinat C, Parigi G, Walker FA (1999) J Biol Inorg Chem 4:515-519
8. Band I, Bertini I, Cavallaro G, Luchinat C, (2002) J Biol Inorg Chem 7:416-426
9. Turner DL (1995) Eur J Biochem 227:829-837
10. Sanbongi Y, Ishii M, Igarashi Y, Kodama T (1989) J Bacteriol 171:65-69
11. Matsuura Y, Takano T, Dickerson RE (1982) J Mol Biol 156:389-409
12. Hasegawa J, Yoshida T, Yamazaki T, Sambongi Y, Yu Y, Igarashi Y, Kodama T, Yamazaki K, Kyogoku Y, Kobayashi Y (1998) Biochemistry 37:9641-9649
13. Hasegawa J, Shimahara H, Mizutani M, Uchiyama S, Arai H, Ishii M, Kobayasi Y, Ferguson SJ, Sambongi Y, Igarashi Y (1999) J Biol Chem 274:37533-37537
14. Hasegawa J, Uchiyama S, Tanimoto Y, Mizutani M, Kobayashi Y, Sambongi Y, Igarashi Y (2000) J Biol Chem 275:37824-37828
15. Uchiyama S, Hasegawa J, Tanimoto Y, Moriguchi H, Mizutani M, Igarashi Y, Sambongi Y, Kobayashi Y (2002) Protein Eng 15:455-461
16. Sambongi Y, Uchiyama S, Kobayashi Y, Igarashi Y, Hasegawa J (2002) Eur J Biochem 269:3355-3361
17. Yamamoto Y, Terui N, Tachiiri N, Minakawa K, Matsuo H, Kameda T, Hasegawa J, Sambongi Y, Uchiyama S, Kobayashi Y, Igarashi Y (2002) J Am Chem Soc 124:11574-11575
18. Terui N, Tachiiri N, Matsuo H, Hasegawa J, Uchiyama S, Kobayashi Y, Igarashi Y, Sambongi Y, Yamamoto Y (2003) J Am Chem Soc 125:13650-13651
19. Detlefsen DJ, Thanaval V, Pecoraro VL, Wagner G (1991) Biochemistry 30:9040-9046
20. Banci L, Bertini I, Bren KL, Cremonini MA, Gray HB, Luchinat C, Turano P (1996) J Biol Inorg Chem 1:117-126
21. Banci L, Bertini I, Savellini GG, Romagnoli A, Turano P, Cremnini MA, Luchinat C, Gray HB (1997) Proteins 29:68-76
22. Williams G, Clayden NJ, Moore GR, Williams RJP (1985) J Mol Biol 183:447-460
23. Emerson SD, La Mar GN (1990) Biochemistry 29:1556-1566
24. Timkovich R, Cai M (1993) Biochemistry 32:11516-11523
25. Feng Y, Roder H, Englander SW (1990) Biochemistry 29:3494-3504
26. Banci L, Bertini I, Gray HB, Luchinat C, Redding T, Rosato A, Turano P (1997) Biochemistry 36:9867-9877
27. Schejter A, George P (1964) Biochemistry 3:1045-1049
28. Shechter E, Saludjian P (1967) Biopolymers 5:788-790
29. Marion D, Wüthrich K (1983) Biochem Biophys Res Commun 113:967-974
30. States DJ, Haeberkorn RA, Ruben DJ (1982) J Magn Reson 72:286-292
31. Piotto M, Saudek V, Sklenar V (1992) J Biomol NMR 2:661-666
32. Goddard TD, Kneller DG (2002) Sparky 3.105, University of California, San Francisco
33. Berghuis AM, Brayer GD (1992) J Mol Biol 223:959-976
34. Brayer GD, Murphy MEP (1996) In: Scott RA, Mauk AG (eds) Cytochrome c, a multidisciplinary approach. University Science Books, Sausalito, pp 103-166
35. Jesson JP (1973) In: La Mar GN, Horrocks WD Jr, Holm RH (eds) NMR of paramagnetic molecules, principles and applications. Academic Press; New York, pp 1-53
36. Bertini I, Luchinat C, Panigi G (2002) Progr NMR Spectrosc 40:249-273
37. Wüthrich K (1986) NMR of proteins and nucleic acids, Wiley, New York, pp 130-161
38. Gao Y, Boyd J, Pielak GJ, Williams RJP (1991) Biochemistry 30:1928-1934
39. Banci L, Bertini I, Bren KL, Gray HB, Sompornpisut P, Turano P (1997) Biochemistry 36:8992-9001
40. Cai M, Timkovich R (1999) Biochem Biophys Res Commun 254:675-678
41. Tsan P, Caffrey M, Daku ML, Cusanovich M, Marion D, Gans P (2001) J Am Chem Soc 123:2231-2242
42. Liu W, Rumbley J, Englander SW, Wand AJ (2003) Protein Sci 12:2104-2108
43. Yamamoto Y, Nanai N, Chûjô R, Suzuki T (1990) FEBS Lett 264:113-116
44. Karan EF, Russell BS, Bren KL (2002) J Biol Inorg Chem 7:260-272
45. Behere DV, Ales DC, Goff HM (1986) Biochim Biophys Acta 876:285-292.
46. Bushnell GW, Louie GV, Brayer GD (1990) J Mol Biol 214:585-595
47. Saleen MMM, Wilson MT (1988) Inorg Chim Acta 153:93-98
48. Saleen MMM, Wilson MT (1988) Inorg Chim Acta 153:99-104
49. Saleen MMM, Wilson MT (1988) Inorg Chim Acta 153:105-113
50. Low DW, Gray HB, Duus JØ (1997) J Am Chem Soc 119:1-5
51. Shibata N, Iba S, Misaki S, Meyer TE, Bartsch RG, Cusanovich MA, Morimoto Y, Higuchi Y, Yasuoka N (1998) J Mol Biol 284:751-760
52. Iverson TM, Arciero DM, Hooper AB, Ree DC (2001) J Biol Inorg Chem 6:390-397
53. Barker PD, Ferguson SJ (1999) Structure 7:R281-R290
54. Koradi R, Billeter M, Wüthrich K (1996) J Mol Graph 14:51-55