Conformational switching by the scaffolding protein D directs the assembly of bacteriophage φX174

Molecular Cell

Volumn 15, Issue 6, 2004, Pages 991-997

  Morais, Marc C ^a   Fisher, Megan ^a   Kanamaru, Shuji ^a   Przybyla, Laralynne ^a   Burgner, John ^a   Fane, Bentley A ^b   Rossmann, Michael G ^a  

^a PURDUE UNIVERSITY   (United States)

^b UNIVERSITY OF ARIZONA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DIMER; POLYPEPTIDE; PROTEIN D; STRUCTURAL PROTEIN; UNCLASSIFIED DRUG; VIRUS PROTEIN;

ARTICLE; BACTERIOPHAGE; CONFORMATIONAL TRANSITION; CRYSTAL STRUCTURE; MACROMOLECULE; MORPHOGENESIS; PROTEIN ASSEMBLY; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE; X RAY CRYSTALLOGRAPHY;

BACTERIOPHAGE PHI X 174; CAPSID PROTEINS; CRYSTALLOGRAPHY, X-RAY; DIMERIZATION; ESCHERICHIA COLI PROTEINS; MODELS, MOLECULAR; PROTEIN CONFORMATION; PROTEIN STRUCTURE, SECONDARY; RIBOSOMAL PROTEINS;

EID: 4644230086     PISSN: 10972765     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.molcel.2004.08.023     Document Type: Article

References (31)

1. Berget P. Pathways in viral morphogenesis. Casjens S. Virus Structure and Assembly. 1985;149-168 Jones and Bartlett, Boston
2. Bernal R.A., Hafenstein S., Olson N.H., Bowman V.D., Chipman P.R., Baker T.S., Fane B.A., Rossmann M.G. Structural studies of bacteriophage α3 assembly. J. Mol. Biol. 325:2003;11-24
3. Brünger A.T., Adams P.D., Clore G.M., DeLano W.L., Gros P., Grosse-Kunstleve R.W., Jiang J.S., Kuszewski J., Nilges M., Pannu N.S., et al. Crystallography and NMR system. a new software suite for macromolecular structure determination Acta Crystallogr. D Biol Crystallogr. 54:1998;905-921
4. Burch A.D., Fane B.A. Foreign and chimeric external scaffolding proteins as inhibitors of Microviridae morphogenesis. J. Virol. 74:2000;9347-9352
5. Burch A.D., Fane B.A. Genetic analyses of putative conformation switching and cross-species inhibitory domains in Microviridae external scaffolding proteins. Virology. 310:2003;64-71
6. Casjens S., Hendrix R. Control mechanisms in dsDNA bacteriophage assembly. Calendar R. The Bacteriophages. 1988;15-75 Plenum Press, New York
7. Caspar D.L.D. Movement and self-control in protein assemblies. Quasi-equivalence revisited. Biophys. J. 32:1980;103-138
8. Caspar D.L.D., Klug A. Physical principles in the construction of regular viruses. Cold Spring Harb. Symp. Quant. Biol. 27:1962;1-24
9. Dokland T. Scaffolding proteins and their role in viral assembly. Cell. Mol. Life Sci. 56:1999;580-603
10. Dokland T., McKenna R., Ilag L.L., Bowman B.R., Incardona N.L., Fane B.A., Rossmann M.G. Structure of a viral procapsid with molecular scaffolding. Nature. 389:1997;308-313
11. Dokland T., Bernal R.A., Burch A., Pletnev S., Fane B.A., Rossmann M.G. The role of scaffolding proteins in the assembly of the small, single-stranded DNA virus φX174. J. Mol. Biol. 288:1999;595-608
12. Fane B.A., Hayashi M. Second-site suppressors of a cold-sensitive prohead assembly protein of bacteriophage φX174. Genetics. 128:1991;663-671
13. Fane B.A., Prevelige P.E. Jr. Mechanism of scaffolding-assisted viral assembly. Adv. Protein Chem. 64:2003;259-299
14. Farber M.B. Purification and properties of bacteriophage φX174 gene D products. J. Virol. 17:1976;1027-1037
15. Fujisawa H., Hayashi M. Assembly of bacteriophage φX174. identification of a virion capsid precursor and proposal of a model for the functions of bacteriophage gene products during morphogenesis J. Virol. 24:1977;303-313
16. Hayashi M., Aoyama A., Richardson D.L. Jr., Hayashi M.N. Biology of the bacteriophage φX174. Calendar R. The Bacteriophages. 1988;1-71 Plenum Press, New York and London
17. James L.C., Tawfik D.S. Conformational diversity and protein evolution. a 60-year-old hypothesis revisited Trends Biochem. Sci. 28:2003;361-368
18. Jones T.A., Zou J.Y., Cowan S.W., Kjeldgaard M. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A. 47:1991;110-119
19. King J., Casjens S. Catalytic head assembling protein in virus morphogenesis. Nature. 251:1974;112-119
20. King J., Griffin-Shea R., Fuller M.T. Scaffolding proteins and the genetic control of virus shell assembly. Q. Rev. Biol. 55:1980;369-393
21. Morais M.C., Kanamaru S., Badasso M.O., Koti J.S., Owen B.A.L., McMurray C.T., Anderson D.L., Rossmann M.G. Bacteriophage φ29 scaffolding protein gp7 before and after prohead assembly. Nat. Struct. Biol. 10:2003;572-576
22. Navaza J. AMoRe. an automated package for molecular replacement Acta Crystallogr. A. 50:1994;157-163
23. Otwinowski Z., Minor W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276:1997;307-326
24. Ray P., Murialdo H. The role of gene Nu3 in bacteriophage lambda head morphogenesis. Virology. 64:1975;247-263
25. Rossmann M.G. The molecular replacement method. Acta Crystallogr. A. 46:1990;73-82
26. Showe M.K., Black L.W. Assembly core of bacteriophage T4. an intermediate in head formation Nat. New Biol. 242:1973;70-75
27. Siden E.J., Hayashi M. Role of the gene B product in bacteriophage φX174 development. J. Mol. Biol. 89:1974;1-16
28. Sun Y., Parker M.H., Weigele P., Casjens S., Prevelige P.E. Jr., Krishna N.R. Structure of the coat protein-binding domain of the scaffolding protein from a double-stranded DNA virus. J. Mol. Biol. 297:2000;1195-1202
29. Thuman-Commike P.A., Greene B., Jakana J., McGough A., Prevelige P.E. Jr., Chiu W. Interactions in a bacteriophage P22 mutant defective in maturation. J. Virol. 74:2000;3871-3873
30. Tonegawa S., Hayashi M. Intermediates in the assembly of φX174. J. Mol. Biol. 48:1970;219-242
31. Wood W.B., Conley M.P. Attachment of tail fibers in bacteriophage T4 assembly. J. Mol. Biol. 127:1979;15-29