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Volumn , Issue , 2006, Pages 227-232

An FPGA implementation of high throughput stochastic simulator for large-scale biochemical systems

Author keywords

[No Author keywords available]

Indexed keywords

ELECTRON BEAM LITHOGRAPHY; FIELD PROGRAMMABLE GATE ARRAYS (FPGA); FUZZY LOGIC; STOCHASTIC CONTROL SYSTEMS; STOCHASTIC PROGRAMMING; THROUGHPUT;

EID: 46249097192     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/FPL.2006.311218     Document Type: Conference Paper
Times cited : (6)

References (14)
  • 1
    • 0017030517 scopus 로고
    • A general method for numerically simulating the stochastic time evolution of coupled chemical reactions
    • D. T. Gillespie, "A general method for numerically simulating the stochastic time evolution of coupled chemical reactions," J. Comput. Phys., vol. 22, pp. 403-434, 1976.
    • (1976) J. Comput. Phys , vol.22 , pp. 403-434
    • Gillespie, D.T.1
  • 2
    • 0036204115 scopus 로고    scopus 로고
    • Stocks: Stochastic kinetic simulations of biochemical systems with gillespie algorithm
    • Mar
    • A. M. Kierzek, "Stocks: Stochastic kinetic simulations of biochemical systems with gillespie algorithm," Bioinformatics, vol. 18, no. 3, pp. 470-481, Mar. 2002.
    • (2002) Bioinformatics , vol.18 , Issue.3 , pp. 470-481
    • Kierzek, A.M.1
  • 4
    • 0001144902 scopus 로고    scopus 로고
    • Efficient exact stochastic simulation of chemical systems with many species and many channels
    • M. A.Gibson and J. Bruck, "Efficient exact stochastic simulation of chemical systems with many species and many channels," J. Phys. Chem. A, vol. 104, no. 9, pp. 1876-1889, 2000.
    • (2000) J. Phys. Chem. A , vol.104 , Issue.9 , pp. 1876-1889
    • Gibson, M.A.1    Bruck, J.2
  • 5
    • 4644266081 scopus 로고    scopus 로고
    • Efficient formulation of the stochastic simulation algorithm for chemically reacting systems
    • Y. Cao et al., "Efficient formulation of the stochastic simulation algorithm for chemically reacting systems," J. Chem. Phys., vol. 121, no. 9, pp. 4059-4067, 2004.
    • (2004) J. Chem. Phys , vol.121 , Issue.9 , pp. 4059-4067
    • Cao, Y.1
  • 6
    • 1542400036 scopus 로고    scopus 로고
    • A multi-algorithm, multi-timescale method for cell simulation
    • Mar
    • K. Takahashi et al., "A multi-algorithm, multi-timescale method for cell simulation," Bioinformatics, vol. 20, no. 4, pp. 538-546, Mar. 2004.
    • (2004) Bioinformatics , vol.20 , Issue.4 , pp. 538-546
    • Takahashi, K.1
  • 7
    • 3543035194 scopus 로고    scopus 로고
    • The need for speed in stochastic simulation
    • Aug
    • L. Lok, "The need for speed in stochastic simulation," Nat. Biotechnol., vol. 22, no. 8, pp. 964-965, Aug. 2004.
    • (2004) Nat. Biotechnol , vol.22 , Issue.8 , pp. 964-965
    • Lok, L.1
  • 8
    • 4344608169 scopus 로고    scopus 로고
    • An FPGA-based acceleration method for metabolic simulation
    • Aug
    • Y. Osana et al., "An FPGA-based acceleration method for metabolic simulation," IEICE Trans. on Information and Systems, vol. E87-D, no. 8, pp. 2029-2037, Aug. 2004.
    • (2004) IEICE Trans. on Information and Systems , vol.E87-D , Issue.8 , pp. 2029-2037
    • Osana, Y.1
  • 9
    • 3543021471 scopus 로고    scopus 로고
    • In silico simulation of biological network dynamics
    • Aug
    • L. Salwinski et al., "In silico simulation of biological network dynamics," Nat. Biotechnol., vol. 22, no. 8, pp. 1017-1019, Aug. 2004.
    • (2004) Nat. Biotechnol , vol.22 , Issue.8 , pp. 1017-1019
    • Salwinski, L.1
  • 11
    • 33645429016 scopus 로고
    • Exact stochastic simulation of coupled chemical reactions
    • Dec
    • D. T. Gillespie, "Exact stochastic simulation of coupled chemical reactions," J. Phys. Chem., vol. 81, no. 25, pp. 2340-2461, Dec. 1977.
    • (1977) J. Phys. Chem , vol.81 , Issue.25 , pp. 2340-2461
    • Gillespie, D.T.1
  • 12
    • 35048821457 scopus 로고    scopus 로고
    • Stochastic simulation for biochemical reactions on FPGA
    • proc. of the 14th Intl. Conf. on Field-Prog. Logic and Applications
    • M. Yoshimi et al., "Stochastic simulation for biochemical reactions on FPGA," in proc. of the 14th Intl. Conf. on Field-Prog. Logic and Applications, ser. LNCS, vol. 3203, 2004, pp. 105-114.
    • (2004) ser. LNCS , vol.3203 , pp. 105-114
    • Yoshimi, M.1
  • 13
    • 33846618770 scopus 로고    scopus 로고
    • The design of scalable stochastic biochemical simulator on FPGA
    • M. Yoshimi et al., "The design of scalable stochastic biochemical simulator on FPGA," in proc. of IEEE Intl. Conf. on Field-Prog. Technology, 2005, pp. 339-340.
    • (2005) proc. of IEEE Intl. Conf. on Field-Prog. Technology , pp. 339-340
    • Yoshimi, M.1
  • 14
    • 0035933994 scopus 로고    scopus 로고
    • Approximate acclerated stochastic simulation of chemically reacting systems
    • Jul
    • D. T. Gillespie, "Approximate acclerated stochastic simulation of chemically reacting systems," J. Chem. Phys., vol. 115, no. 4, pp. 1717-1733, Jul. 2001.
    • (2001) J. Chem. Phys , vol.115 , Issue.4 , pp. 1717-1733
    • Gillespie, D.T.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.