Proteomic analysis of proteins associated with body mass and length in yellow perch, Perca flavescens

Proteomics

Volumn 8, Issue 11, 2008, Pages 2333-2343

  Reddish, John Mark ^a   St Pierre, Normand ^a   Nichols, Andy ^a   Green Church, Kari ^a   Wick, Macdonald ^a  

^a OHIO STATE UNIVERSITY   (United States)

Author keywords

Muscle; Perca flavescens; Proteomic fingerprint; Yellow perch

Indexed keywords

DYE; GENE PRODUCT; MUSCLE PROTEIN;

AMINO ACID SEQUENCE; ANIMAL TISSUE; ARTICLE; BODY HEIGHT; BODY MASS; COMPUTER PROGRAM; LIQUID CHROMATOGRAPHY; MUSCLE GROWTH; NONHUMAN; NUCLEOTIDE SEQUENCE; PERCH; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEOMICS; TANDEM MASS SPECTROMETRY;

ANIMALS; BODY COMPOSITION; BODY WEIGHT; CHROMATOGRAPHY, LIQUID; ELECTROPHORESIS, POLYACRYLAMIDE GEL; FISH PROTEINS; GENE EXPRESSION REGULATION; MASS SPECTROMETRY; MUSCLES; ORGANOMETALLIC COMPOUNDS; PERCHES; PROTEOME; PROTEOMICS; REGRESSION ANALYSIS; TIME FACTORS;

PERCA; PERCA FLAVESCENS;

EID: 46049098828     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.200700533     Document Type: Article

References (45)

1. Greenlee, A. R., Dodson, M. V., Yablonka-Reuveni, Z., Kersten, C. A., Cloud, J. G., In vitro differentiation of myoblast from skeletal muscle of rainbow trout. J. Fish Biol. 1995, 46, 731-747.
2. Weatherley, A. H., Gill, H. S., Growth dynamics of white myotomal muscle fibres in the bluntnose minnow, Pimephales notatus Rafinesque, and comparison with rainbow trout, Salmo gairdneri. J. Fish Biol. 1984, 25, 13-24.
3. Weatherley, A. H., Gill, H. S., Dynamics of increase in muscle fibers in fishes in relation to size and growth. Experientia 1985, 41, 353-354.
4. Veggetti, A., Mascarello, F., Scapolo, P. A., Rowlerson, A., Carnevali, C., Muscle growth and myosin isoform transitions during development of a small teleost fish, Poecilia reticulata (Peters) (Atheriniformes, Poeciliidae): A histochemical, immunohistochemical, ultrastructural and morphometric study. Anat. Embryol. (Berl) 1993, 187, 353-361.
5. Rowlerson, A., Radaelli, G., Mascarello, F., Veggetti, A., Regeneration of skeletal muscle in two teleost fish: Sparus aurata and Brachydanio rerio. Cell Tissue Res. 1997, 289, 311-322.
6. Koumans, J. T. M., Akster, H. A., Booms, R. G. H., Osse, J. W. M., Influence of fish size on proliferation and differentiation of cultured myosatellite cells of white axial muscle of carp, (Cyprinus carpio L.). Differentiation 1993, 53, 1-6.
7. Rowlerson, A., Mascarello, F., Radaelli, G., Veggetti, A., Differentiation and growth of muscle in the fish, Sparus aurata (L): II Hyperplastic and hypertrophic growth of lateral muscle from hatching to adult. J. Muscle Res. Cell Motil. 1995, 16, 223-236.
8. Koumans, J. T. M., Akster, H. A., Myogenic cells in development and growth of fish. Comp. Biochem. Physiol. 1995, 110, 3-20.
9. Karasinski, J., Diversity of native myosin and myosin heavy chain in fish skeletal muscles. Comp. Biochem. Physiol. B Biochem. Mol. Biol. 1993, 106, 1041-1047.
10. Rowlerson, A., Scapolo, P., Mascarello, F., Carpene, E., Veggetti, A., Comparative study of myosins present in the lateral muscle of some fish: Species variations in myosin isoforms and their distribution in red, pink and white muscle. J. Muscle Res. Cell Motil. 1985, 6, 601.
11. Van Raamsdonk, W., Van't Veer, L., Veeken, K., Heyting, C., Pool, C., Differentiation of muscle fiber types in the teleost, Brachydanio rerio, the zebrafish. Posthatching development. Anat. Embryol. 1982, 164, 51.
12. Boles, J. A., Parrish, F. C. Jr., Skaggs, C. L., Christian, L. L., Sensory, physical, and chemical properties of pork loin chops from somatotropin-treated pigs of three stress classifications. J. Anim. Sci. 1992, 70, 3066-3070.
13. Bendall, J. R., Wismer-Pedersen, J., Some properties of the fibrillar proteins of normal and watery pork muscle. J. Food Sci. 1962, 27, 144-159.
14. Alvarado, C. Z., Sams, A. R., Turkey carcass chilling and protein denaturation in the development of pale, soft, and exudative meat. Poult. Sci. 2004, 83, 1039-1046.
15. Mckee, S. R., Sams, A. R., Rigor mortis development at elevated temperatures induced pale exudative turkey meat characteristics. Poult. Sci. 1998, 77, 169-174.
16. Owens, C. M., Hirschler, E. M., McKee, S. R., Martinez-Dawson, R., Sams, A. R., The characterization and incidence of pale, soft, exudative turkey meat in a commercial plant. Poult. Sci. 2000, 79, 553-558.
17. Sosnicki, A., Histopathological observation of stress myopathy in M. longissimus in the pig and relationships with meat quality, fattening and slaughter traits. J. Anim. Sci. 1987, 65, 584.
18. Barbut, S., Estimates and detection of the PSE problem in young turkey breast meat. Can J. Anim. Sci. 1996, 455-457.
19. Updike, M. S., Zerby, H., Utrata, K. L., Lilburn, M., Kalentunc, G., Wick, M., Proteins associated with thermally induced gelation of turkey breast meat. J. Food Sci. 2006, 71.
20. SAS. Release 9.1, SAS Institute Inc., Cary, NC 2006.
21. Draper, N. R., Smith, H., Applied Regression Analysis. Wiley, New York 1998.
22. Efron, B., Tibshirani, R., Bootstrap methods for standard errors, confidence intervals, and other measures of statistical accuracy. Stat. Sci. 1986, 1, 54-75.
23. Good, P. I., Resampling Methods: A Practical Guide to Data Analysis. Birkhäuser, Boston 2006.
24. Carr, S., Aebersold, R., Baldwin, M., Burlingame, A., et al., The need for guidelines in publication of peptide and protein identification data: Working group on publication guidelines for peptide and protein identification data. Mol. Cell. Proteomics 2004, 3, 531-533.
25. Efron, B., Bootstrap methods: Another look at the jackknife. Ann. Stat. 1979, 7, 1-26.
26. Wilkins, M. R., Appel, R. D., Van Eyk, J. E., Chung, M. C. M., et al., Guidelines for the next 10 years of proteomics. Proteomics 2006, 6, 4-8.
27. Campostrini, N., Areces, L., Rappsilber, J., Pietrogrande, M., et al., Spot overlapping in two-dimensional maps: A serious problem ignored for much too long. Proteomics 2005, 5, 2385.
28. Johnston, I. A., Muscle development and growth: Potential implications for flesh quality in fish. Aquaculture 1999, 177, 99-115.
29. Weatherley, A. H., Gill, H. S., Rogers, S. C., Growth dynamics of muscle fibres, dry weight, and condition in relation to somatic growth rate in yearling rainbow trout, Salmo gairdneri. Can. J. Zool. 1979, 57, 2385-2392.
30. Johnston, I. A., Moon, T. W., Exercise training in skeletal muscle of brook trout (Salvelinus fontinalis). J. Exp. Biol. 1980, 87, 177-194.
31. Kiessling, A., Storebakken, T., Asgard, T., Kiessling, K. H., Changes in the structure and function of the epaxial muscle of rainbow trout (Oncorhynchus mykiss) in relation to ration and age: I Growth dynamics. Aquaculture 1991, 93, 335-356.
32. Merritt, T., Quattro, J., Negative charge correlates with neural expression in vertebrate aldolase isozymes. J. Mol. Evol. 2002, 55, 674.
33. Morzel, M., Chambon, C., Lefevre, F., Paboeuf, G., Laville, E., Modifications of trout (Oncorhynchus mykiss) muscle proteins by preslaughter activity. J. Agric. Food Chem. 2006, 54, 2997-3001.
34. Bosworth, C. A., Chou, C. W., Cole, R. B., Rees, B. B., Protein expression patterns in zebrafish skeletal muscle: Initial characterization and the effects of hypoxic exposure. Proteomics 2005, 5, 1362-1371.
35. Sun, H. W., Hui, C. F., Wu, J. L., Cloning, characterization, and expression in Escherichia coli of three creatine kinase muscle isoenzyme cDNAs from carp (Cyprinus carpio) striated muscle. J. Biol. Chem. 1998, 273, 33774-33780.
36. Gong, H., Wu, J., Huang, W., Ji-Fan Lin, C., Weng, C., Response to acute changes in salinity of two different muscle type creatine kinase isoforms, from euryhaline teleost (Oreochromis mossambicus) gills. Biochim. Biophys. Acta 2004, 1675, 184.
37. Ohta, S., Nishikawa, A., Imamura, K., Molecular cloning and expression of pyruvate kinase from globefish (Fugu rubripes) skeletal muscle. Comp. Biochem. Physiol. B Biochem. Mol. Biol. 2003, 135, 397.
38. Hirayama, Y., Kobiyama, A., Ochiai, Y., Watabe, S., Two types of mRNA encoding myosin regulatory light chain in carp fast skeletal muscle differ in their 3′ noncoding regions and expression patterns following temperature acclimation. J. Exp. Biol. 1998, 201, 2815-2820.
39. Kikuchi, K., Muramatsu, M., Hirayama, Y., Watabe, S., Characterization of the carp myosin heavy chain multigene family. Gene 1999, 228, 189-196.
40. Watabe, S., Temperature plasticity of contractile proteins in fish muscle. J. Exp. Biol. 2002, 205, 2231-2236.
41. Hirayama, Y., Kanoh, S., Nakaya, M., Watabe, S., The two essential light chains of carp fast skeletal myosin, LC1 and LC3, are encoded by distinct genes and change their molar ratio following temperature acclimation. J. Exp. Biol. 1997, 200, 693-701.
42. Moutou, K. A., Canario, A. V. M., Mamuris, Z., Power, D. M., Molecular cloning and sequence of Sparus aurata skeletal myosin light chains expressed in white muscle: Developmental expression and thyroid regulation. J. Exp. Biol. 2001, 204, 3009-3018.
43. Hill, J. A., Kiessling, A., Devlin, R., Coho salmon (Oncorhynchus kisutch) transgenic for a growth hormone gene construct exhibit increased rates of muscle hyperplasia and detectable levels of differential gene expression. Can. J. Fish Aquat. Sci. 2000, 57, 939-950.
44. Xu, Y., He, J., Tian, H., Chan, C., et al., Fast skeletal muscle-specific expression of a zebrafish myosin light chain 2 gene and characterization of its promoter by direct injection into skeletal muscle. DNA Cell. Biol. 1999, 18, 85.
45. Johnston, I. A., Cole, N. J., Abercromby, M., Vieira, V., Embryonic temperature modulates muscle growth characteristics in larval and juvenile herring. J. Exp. Biol. 1998, 201, 623-646.