Mechanisms of siderophore sorption to smectite and siderophore-enhanced release of structural Fe3+

Geochimica et Cosmochimica Acta

Volumn 72, Issue 14, 2008, Pages 3381-3397

  Haack, Elizabeth A ^a   Johnston, Cliff T ^b   Maurice, Patricia A ^a  

^a University of Notre Dame   (United States)

^b PURDUE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DISSOLUTION; FTIR SPECTROSCOPY; SIDEROPHORE; SMECTITE; SORPTION; X-RAY DIFFRACTION;

EID: 46049084571     PISSN: 00167037     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gca.2008.03.027     Document Type: Article

References (91)

1. Albrecht-Gary A.-M., and Crumbliss A.L. Coordination chemistry of siderophores: thermodynamics and kinetics of iron chelation and release. In: Sigel A., and Sigel H. (Eds). Metal Ions in Biological Systems (1998), Marcel Dekker, New York, NY 239-327
2. Amram K., and Ganor J. The combined effect of pH and temperature on smectite dissolution rate under acidic conditions. Geochim. Cosmochim. Acta 69 (2005) 2535-2546
3. Andrews S.C., Robinson A.K., and Rodriguez-Quinones F. Bacterial iron homeostasis. FEMS Micrbiol. Rev. 27 (2003) 215-237
4. 3+ in smectite. Clays Clay Miner. 53 (2005) 587-596
5. Bleam W.F. The nature of cation-substitution sites in phyllosilicates. Clays Clay Miner. 38 (1990) 527-536
6. Borden D., and Giese R.F. Baseline studies of The Clay Minerals Society Source Clays: cation exchange capacity measurements by the ammonia-electrode method. Clays Clay Miner. 49 (2001) 444-445
7. Breen C., Madejova J., and Komadel P. Characterization of moderately acid-treated, size-fractionated montmorillonites using IR and MAS NMR-spectroscopy and thermal analysis. J. Mater. Chem. 5 (1995) 469-474
8. Breen C., Clegg F., Hughes T.L., and Yarwood J. Thermal and spectroscopic characterization of N-methylformamide/Ca-, Mg-, and Na-exchanged montmorillonite intercalates. Langmuir 16 (2000) 6648-6656
9. Cenens J., and Schoonheydt R.A. Visible spectroscopy of methylene blue on hectorite, laponite-B, and Barasym in aqueous suspension. Clays Clay Miner. 36 (1988) 214-224
10. Chattopadhyay S., and Traina S.J. Spectroscopic study of sorption of nitrogen heterocyclic compounds on phyllosilicates. Langmuir 15 (1999) 1634-1639
11. Cheah S.-F., Kraemer S.M., Cervini-Silva J., and Sposito G. Steady state dissolution kinetics of goethite in the presence of desferrioxamine-B and oxalate ligands: implications for the microbial acquisition of iron. Chem. Geol. 198 (2003) 63-75
12. Chipera S.J., and Bish D.L. Baseline studies of the clay minerals society source clays: powder X-ray diffraction analyses. Clays Clay Miner. 49 (2001) 398-409
13. Chorover J., and Amistadi M.K. Reaction of forest floor organic matter at goethite, birnessite, and smectite surfaces. Geochim. Cosmochim. Acta 65 (2001) 95-109
14. Cocozza C., Tsao C., Cheah S.-F., Kraemer S.M., Raymond K.N., Miano T.M., and Sposito G. Temperature dependence of goethite dissolution promoted by trihydroxamate siderophores. Geochim. Cosmochim. Acta 66 (2002) 431-438
15. In: Costanzo P.M., and Guggenheim S. (Eds). Baseline studies of The Clay Minerals Society Source Clays. Clays Clay Miner. 49 (2001) 371-452
16. Cowan C.T., and White D. The mechanism of exchange reactions occurring between sodium montmorillonite and various n-primary aliphatic amine salts. Trans. Faraday Soc. 54 (1958) 691-697
17. Cowan C.T., and White D. Adsorption by organo-clay complexes. Clays Clay Miner. 9 (1960) 458-467
18. De Oliveira M.F., Johnston C.T., Premachandra G.S., Teppen B.J., Li H., Laird D.A., Zhu D.Q., and Boyd S.A. Spectroscopic study of carbaryl sorption on smectite from aqueous suspension. Environ. Sci. Technol. 39 (2005) 9123-9129
19. Dhungana S., and Crumbliss A.L. Coordination chemistry and redox processes in siderophore-mediated iron transport. Geomicrobiol. J. 22 (2005) 87-98
20. Dhungana S., White P.S., and Crumbliss A.L. Crystal structure of ferrioxamine B: a comparative analysis and implications for molecular recognition. J. Biol. Inorg. Chem. 6 (2001) 810-818
21. Duckworth O.W., and Sposito G. Siderophore-manganese(III) interactions: II. Manganite dissolution promoted by desferrioxamine B. Environ. Sci. Technol. 39 (2005) 6045-6051
22. Duckworth O.W., and Sposito G. Siderophore-manganese (III) interactions: I. Air-oxidation of manganese(II) promoted by desferrioxamine B. Environ. Sci. Technol. 39 (2005) 6037-6044
23. Edwards D.C., Nielsen S.B., Jarze{ogonek}cki A.A., Spiro T.G., and Myneni S.B. Experimental and theoretical vibrational spectroscopy studies of acetohydroxamic acid and desferrioxamine B in aqueous solution: effects of pH and iron complexation. Geochim. Cosmochim. Acta 69 (2005) 3237-3248
24. Farmer V.C. The layer silicates. In: Farmer V.C. (Ed). The Infrared Spectra of Minerals (1974), Mineral Society, London 331-359
25. Giles C.H., Smith D., and Huitson A. A general treatment and classification of the solute adsorption isotherms: I. Theoretical. J. Colloid. Interface Sci. 47 (1974) 755-765
26. Golubev S.V., Bauer A., and Pokrovsky O.S. Effect of pH and organic ligands on the kinetics of smectite dissolution at 25 °C. Geochim. Cosmochim. Acta 70 (2006) 4436-4451
27. Griffiths P., and Pariente G.L. Introduction to spectral deconvolution. TrAC 5 (1986) 209-215
28. Hadzi D., and Prevorsek D. Infra-red absorption bands associated with the NH group-III hydroxamic acids and derivatives. Spectrochim. Acta 10 (1957) 38-51
29. Hansen D.C., McCafferty E., Lins C.W., and Fitzpatrick J.J. An FT-IR investigation of parabactin adsorbed onto aluminum. Appl. Surf. Sci. 84 (1995) 85-90
30. He H.P., Frost R.L., Bostrom T., Yuan P., Duong L., Yang D., Yunfel X.F., and Kloprogge J.T. Changes in the morphology of organoclays with HDTMA(+) surfactant loading. Appl. Clay Sci. 31 (2006) 262-271
31. Hepinstall S.E., Turner B.F., and Maurice P.A. Effects of siderophores on Pb and Cd adsorption to kaolinite. Clays Clay Miner. 53 (2005) 557-563
32. Hersman L.E., Forsythe J.H., Ticknor L.O., and Maurice P.A. Growth of P. mendocina on Fe(III)(hydr)oxides. Appl. Environ. Microbiol. 67 (2001) 4448-4453
33. Holmén B.A., and Casey W.H. Hydroxamate ligands, surface chemistry, and the mechanisms of ligand-promoted dissolution of goethite [α-FeOOH(s)]. Geochim. Cosmochim. Acta 60 (1996) 4403-4416
34. Holmén B.A., Tejedor-Tejedor M.I., and Casey W.H. Hydroxamate complexes in solution and at the goethite-water interface: a cylindrical internal reflection Fourier transform infrared spectroscopy study. Langmuir 3 (1997) 2197-2206
35. Hossain M.B., Jalal M.A.F., and van der Helm D. The structure of ferrioxamine D1/ethanol/water (1/2/1). Acta Crystallogr. C 42 (1986) 1305-1310
36. Jaynes W.F., and Boyd S.A. Clay mineral type and organic compound sorption by hexadecyltrimethlyammonium-exchanged clays. Soil Sci. Soc. Am. J. 55 (1991) 43-48
37. Johnston C.T., Sposito G., and Ericksonm C. Vibrational probe studies of water interactions with montmorillonite. Clays Clay Miner. 40 (1992) 722-730
38. Johnston C.T. Sorption of organic compounds on clay minerals: a surface functional group approach. In: Sawhney B. (Ed). Organic Pollutants in the Environment (1996), Clay Minerals Society, Boulder, CO 1-44
39. Johnston C.T., and Tombacz E. Surface chemistry of soil minerals. In: Dixon J.B., and Schulze D.G. (Eds). Soil Mineralogy with Environmental Applications (2002), Soil Science Society of America, Madison, WI 37-67
40. Johnston C.T., Farmer W., and Aochi Y. Fourier transform infrared and Raman spectroscopy. In: Sparks D. (Ed). Methods of Soil Analysis, Part 3. Chemical Methods (1996), Soil Science Society of America, Madison, WI 269-321
41. Johnston C.T., Boyd S.A., Teppen B.J., and Sheng G. Sorption of nitroaromatic compounds on clay surfaces. In: Auerbach S.M., Carrado K.A., and Dutta P.K. (Eds). Handbook of Layered Materials (2004), Marcel Dekker, New York, NY 155-189
42. Johnston C.T., De Oliveira M.F., Teppen B.J., Sheng G.Y., and Boyd S.A. Spectroscopic study of nitroaromatic-smectite sorption mechanisms. Environ. Sci. Technol. 24 (2001) 4767-4772
43. Johnston C.T., Sheng G., Teppen B.J., Boyd S.A., and De Oliveira M.F. Spectroscopic study of dinitrophenol herbicide sorption on smectite. Environ. Sci. Technol. 36 (2002) 5067-5074
44. Kalinowski B.E., Liermann L.J., Givens S., and Brantley S.L. Rates of bacteria-promoted solubilization of Fe from minerals: a review of problems and approaches. Chem. Geol. 169 (2000) 357-370
45. Kendall T.A., and Hochella M.F. Measurement and interpretation of molecular-level forces of interaction between the siderophore azotobactin and mineral surfaces. Geochim. Cosmochim. Acta 67 (2003) 3537-3546
46. Kendall T.A., Hochella M.F., and Becker U. Computational modeling of azotobactin-goethite/diaspore interactions: applications to molecular force measurements and siderophore-mineral reactivity. Chem. Geol. 216 (2005) 17-35
47. Komadel P., Bujdák J., Madejová J., Šucha V., and Elsass F. Effect of non-swelling layers on the dissolution of reduced-charge montmorillonite in hydrochloric acid. Clay Miner. 31 (1996) 333-345
48. Kraemer S.M., Cheah S.-F., Zapf R., Xu J., Raymond K., and Sposito G. Effects of hydroxamate siderophores on Fe release and Pb (II) adsorption by goethite. Geochim. Cosmochim. Acta 63 (1999) 3003-3008
49. Kraemer S.M. Iron oxide dissolution and solubility in the presence of siderophores. Aquat. Sci. 66 (2004) 3-18
50. Lagaly G. Characterization of clays by organic-compounds. Clay Miner. 16 (1981) 1-21
51. Li H., Teppen B.J., Johnston C.T., and Boyd S.A. Thermodynamics of nitroaromatic compound adsorption from water by smectite clay. Environ. Sci. Technol. 38 (2004) 5433-5442
52. Li H., Teppen B.J., Laird D.A., Johnston C.T., and Boyd S.A. Geochemical modulation of pesticide sorption on smectite clay. Environ. Sci. Technol. 38 (2004) 5393-5399
53. Li H., Teppen B.J., Laird D.A., Johnston C.T., and Boyd S.A. Effects of increasing potassium chloride and calcium chloride ionic strength on pesticide sorption by potassium- and calcium-smectite. Soil Sci. Soc. Am. J. 70 (2006) 1889-1895
54. Liermann J.J., Kalinowski B.E., Brantley S.L., and Ferry J.G. Role of bacterial siderophores in dissolution of hornblende. Geochim. Cosmochim. Acta 64 (2000) 587-602
55. Liu X.-D., and Lu X.-C. A thermodynamic understanding of clay-swelling inhibition by potassium ions. Angew. Chem. Int. Ed. 45 (2006) 6300-6303
56. Margulies L., Rozen H., and Nir S. Model for competitive adsorption of organic cations on clays. Clays Clay Miner. 36 (1988) 270-276
57. Martell A. E., Smith R. M. and Motekaitis R. J. (2001) NIST Critically Selected Stability Constants of Metal Complexes. NIST Standard Reference Database 46, Version 6.0, NIST, Gaithersburg.
58. McBride M.B., Mortland M.M., and Pinnavaia T.J. Exchange ion positions in smectite-effects on electron-spin resonance of structural iron. Clays Clay Miner. 23 (1975) 162-163
59. Mermut A.R., and Cano F. Baseline studies of The Clay Minerals Society Source Clays: chemical analyses of major elements. Clays Clay Miner. 49 (2001) 381-386
60. Neilands J.B. Siderophores-structure and function of microbial iron transport compounds. J. Biol. Chem. 270 (1995) 26723-26726
61. Neubauer U., Nowack B., Furrer G., and Schulin R. Heavy metal sorption on clay minerals affected by the siderophore desferrioxamine B. Environ. Sci. Technol. 34 (2000) 2749-2755
62. Novák I., and Čičel B. Dissolution of smectites in hydrochloric acid: II. Dissolution rates as a function of crystallochemical composition. Clays Clay Miner. 26 (1978) 341-344
63. Oelkers E.H., Schott J., and Devidal J.L. On the interpretation of closed system mineral dissolution experiments: comment on "Mechanism of kaolinite dissolution at room temperature and pressure. Part II: Kinetic study" by Huertas et al. (1999). Geochim. Cosmochim. Acta 65 (2001) 4429-4432
64. Parkhurst D. L. and Appelo C. A. J. (1999) User's guide to PHREEQC (version 2)-a computer program for speciation, batch-reaction, one-dimensional transport, and inverse geochemical calculations. USGS Water-Resources Investigations Report 99-4259.
65. Ras R.H.A., Johnston C.T., Franses E.I., Ramaekers R., Maes G., Foubert P., De Schryver F.C., and Schoonheydt R.A. Polarized infrared study of hybrid Langmuir-Blodgett monolayers containing clay mineral nanoparticles. Langmuir 19 (2003) 4295-4302
66. Raymond K.N., and Dertz E.A. Biochemical and physical properties of siderophores. In: Cross J.H., Mey A.R., and Payne S.M. (Eds). Iron Transport in Bacteria (2004), American Society of Microbiology Press, Washington, DC, MD 3-17
67. Rosenberg D.R., and Maurice P.A. Siderophore adsorption to and dissolution of kaolinite at pH 3 to 7 and 22 °C. Geochim. Cosmochim. Acta 67 (2003) 223-229
68. Scheuing D. R. (1990) In Fourier Transform Infrared Spectroscopy in Colloid and Interface Science (ed. D. R. Scheuing). ACS Symposium Series 441. American Chemical Society, Washington, DC, pp. 1-21.
69. Schwertmann U. Solubility and dissolution of iron-oxides. Plant Soil 130 (1991) 1-25
70. Serratosa J.M., Rausellcolom J.A., and Sanz J. Charge-density and its distribution in phyllosilicates-effect on the arrangement and reactivity of adsorbed species. J. Mol. Catal. 27 (1984) 225-234
71. Sheng G., Johnston C.T., Teppen B.J., and Boyd S.A. Adsorption of dinitrophenol herbicides from water by montmorillonite. Clays Clay Miner. 50 (2002) 25-34
72. Siebner-Freibach H., Hadar Y., and Chen Y. Interaction of iron chelating agents with clay minerals. Soil Sci. Soc. Am. J. 68 (2004) 470-480
73. Siebner-Freibach H., Yariv S., Lapides Y., Hadar Y., and Chen Y. Thermo-FTIR spectroscopic study of the siderophore ferrioxamine B: spectral analysis and stereochemical implications of iron chelation, pH and temperature. J. Agric. Food Chem. 53 (2005) 3434-3443
74. Siebner-Freibach H., Hadar Y., Yariv S., Lapides I., and Chen Y. Thermospectroscopic study of the adsorption mechanism of the hydroxamic siderophore ferrioxamine B by calcium montmorillonite. J. Agric. Food Chem. 54 (2006) 1399-1408
75. 3 solutions. J. Colloid. Interface Sci. 144 (1991) 18-26
76. Slade P.G., Quirk J.P., and Norrish K. Crystalline swelling of smectite samples in concentrated NaCl solutions in relation to layer charge. Clays Clay Miner. 39 (1991) 234-238
77. Sparks D. L., Scheidgger A. M., Strawn D. G. and Schekel K. G. (1998) Kinetics and mechanisms of metal sorption at the mineral-water interface. In Mineral-Water Interfacial Reactions: Kinetics and Mechanisms (eds. D. L. Sparks and T. J. Grundl). American Chemical Society Symposium Series 715, New York, NY, pp. 108-135.
78. Sposito G. The Surface Chemistry of Natural Particles (2004), Oxford University Press, Oxford
79. Sposito G., Skipper N.T., Sutton R., Park S., Soper A.K., and Greathouse J.A. Surface geochemistry of clay minerals. Proc. Natl. Acad. Sci. USA 96 (1999) 3358-3364
80. 27Al MAS NMR. Clay Miner. 29 (1994) 11-19
81. USEPA (1999) MINTEQA2 ver 4.0 Database. Available from: .
82. Vaia R.A., Teukolsky R.K., and Giannelis E.P. Interlayer structure and molecular environment of alkyammonium layered silicates. Chem. Mater. 6 (1994) 1017-1022
83. van der Helm D., and Poling M. Crystal-structure of ferrioxamine E. J. Am. Chem. Soc. 98 (1976) 82-86
84. van Olphen H., and Fripiat J.J. Data Handbook for Clay Minerals and Other Nonmetallic Minerals (1979), Pergamon Press, New York
85. Vantelon D., Pelletier M., Michot L.J., Barres O., and Thomas F. Fe, Mg and Al distribution in the octahedral layer of montmorillonites: an infrared study in the OH-bending region. Clay Miner. 36 (2001) 369-379
86. Whitney G. Role of water in the smectite-to-illite reaction. Clays Clay Miner. 38 (1990) 343-350
87. Winkelmann G. CRC Handbook of Microbial Iron Chelates. ed. (1991), CRC Press, Boca Raton, FL
88. Xu S., and Boyd S.A. Alternative model for cationic surfactant adsorption by layer silicates. Environ. Sci. Technol. 29 (1995) 3022-3028
89. Xu W., Johnston C.T., Parker P., and Agnew S.F. Infrared study of water sorption on Na-, Li-, Ca- and Mg-exchanged (SWy-1 and SAz-1) montmorillonite. Clays Clay Miner. 48 (2000) 120-131
90. 13C NMR. J. Colloid. Interface Sci. 286 (2005) 239-244
91. Zysset M., and Schindler P.W. The proton promoted dissolution kinetics of K montmorillonite. Geochim. Cosmochim. Acta 60 (1996) 921-936