Effect of charge distribution over a chlorophyll dimer on the redox potential of P680 in photosystem II as studied by density functional theory calculations

Biochemistry

Volumn 47, Issue 24, 2008, Pages 6289-6291

  Takahashi, Ryouta ^a   Hasegawa, Koji ^b   Noguchi, Takumi ^a  

^a UNIVERSITY OF TSUKUBA   (Japan)

^b ADVANCESOFT CORPORATION   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CALCULATIONS; CHARGE DISTRIBUTION; CHLOROPHYLL; IONIZATION POTENTIAL; PHOTOACOUSTIC EFFECT; PORPHYRINS; PROBABILITY DENSITY FUNCTION; SECONDARY BATTERIES; X RAY ANALYSIS;

CHARGE DELOCALIZATION; DENSITY FUNCTIONAL THEORY (DFT) CALCULATIONS; PHOTOSYSTEM II (PS II); REDOX POTENTIAL (RP); X RAY STRUCTURES;

DENSITY FUNCTIONAL THEORY;

CHLOROPHYLL; DIMER; HYDROGEN;

ARTICLE; DENSITY FUNCTIONAL THEORY; ELECTRON; IONIZATION; OXIDATION; OXIDATION REDUCTION POTENTIAL; PHOTOSYSTEM II; PRIORITY JOURNAL; X RAY CRYSTALLOGRAPHY;

CHLOROPHYLL; CRYSTALLOGRAPHY, X-RAY; CYANOBACTERIA; DIMERIZATION; ELECTROSTATICS; OXIDATION-REDUCTION; PHOTOSYSTEM II PROTEIN COMPLEX; WATER;

EID: 45749139149     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi8007998     Document Type: Article

References (25)

1. Renger, G., and Holzwarth, A. R. (2005) Primary electron transfer. In Photosystem II: The Light-Driven Water:Plastoquinone Oxidoreductase (Wydrzynski, T., and Satoh, K. Eds.) pp 139-175, Springer, Dordrecht, The Netherlands.
2. Ferreira, K. N., Iverson, T. M., Maghlaoui, K., Barber, J., and Iwata, S. (2004) Architecture of the photosynthetic oxygen-evolving center. Science 19, 1831-1838.
3. Loll, B., Kern, J., Saenger, W., Zouni, A., and Biesiadka, J. (2005) Towards complete cofactor arrangement in the 3.0 Å resolution structure of photosystem II. Nature 438, 1040-1044.
4. Klimov, V. V., Allakhverdiev, S. I., Demeter, S., and Krasnovskii, A. A. (1979) Photoreduction of pheophytin in the photosystem 2 of chloroplasts with respect to the redox potential of the medium. Dokl. Akad. Nauk SSSR 249, 227-230.
5. Rappaport, F., Guergova-Kuras, M., Nixon, P. J., Diner, B. A., and Lavergne, J. (2002) Kinetics and pathways of charge recombination in photosystem II. Biochemistry 41, 8518-8527.
6. Cuni, A., Xiong, L., Sayre, R., Rappaport, F., and Lavergne, J. (2004) Modification of the pheophytin midpoint potential in photosystem II: Modulation of the quantum yield of charge separation and of charge recombination pathways. Phys. Chem. Chem. Phys. 6, 4825-4831.
7. Grabolle, M., and Dau, H. (2005) Energetics of primary and secondary electron transfer in Photosystem II membrane particles of spinach revisited on basis of recombination-fluorescence measurements. Biochim. Biophys. Acta 1708, 209-218.
8. Lin, X., Murchison, H. A., Nagarajan, V., Parson, W. W., Allen, J. P., and Williams, J. C. (1994) Specific alteration of the oxidation potential of the electron-donor in reaction centers from Rhodobacter sphaeroides. Proc. Natl. Acad. Sci. U.S.A. 91, 10265-10269.
9. Blankenship, R. E., and Hartman, H. (1998) The origin and evolution of oxygenic photosynthesis. Trends Biochem. Sci. 23, 94-97.
10. Hasegawa, K., and Noguchi, T. (2005) Density functional theory calculations on the dielectric-constant dependence of the oxidation potential of chlorophyll: Implication for the high potential of P680 in photosystem II. Biochemistry 44, 8865-8872.
11. Ishikita, H., Loll, B., Biesiadka, J., Saenger, W., and Knapp, E.-W. (2005) Redox potentials of chlorophylls in the photosystem II reaction center. Biochemistry 44, 4118-4124.
12. Ishikita, H., Saenger, W., Biesiadka, J., Loll, B., and Knapp, E.-W. (2006) How photosynthetic reaction centers control oxidation power in chlorophyll pairs P680, P700, and P870. Proc. Natl. Acad. Sci. U.S.A. 103, 9855-9860.
13. Rutherford, A. W., and Faller, P. (2003) Photosystem II: Evolutionary perspectives. Philos. Trans. R. Soc. London, Ser. B 358, 245-253.
14. Diner, B. A., Schlodder, E., Nixon, P. J., Coleman, W. J., Rappaport, F., Lavergne, J., Vermaas, W. F. J., and Chisholm, D. A. (2001) Site-directed mutants at D1-His198 and D2-His197 of photosystem II in Synechocystis PCC 6803: Sites of primary charge separation and cation and triplet stabilization. Biochemistry 40, 9265-9281.
15. Okubo, T., Tomo, T., Sugiura, M., and Noguchi, T. (2007) Perturbation of the structure of P680 and the charge distribution on its radical cation in isolated reaction center complexes of photosystem II as revealed by Fourier transform infrared spectroscopy. Biochemistry 46, 4390-4397.
16. Yamasaki, H., Nakamura, H., and Takano, Y. (2007) Theoretical analysis of the electronic asymmetry of the special pair in the photosynthetic reaction center: Effect of structural asymmetry and protein environment. Chem. Phys. Lett. 447, 324-329.
17. Stowell, M. H. B., Mcphillips, T. M., Soltis, S. M., Rees, D. C., Abresch, E., and Feher, G. (1997) Light-induced structural changes in photosynthetic reaction center: Implications for mechanism of electron-proton transfer. Science 276, 812-816.
18. Laporte, L., McDowell, L. M., Kirmaier, C., Schenck, C. C., and Holten, D. (1993) Insights into the factors controlling the rates of the deactivation processes that compete with charge separation in photosynthetic reaction centers. Chem. Phys. 176, 615-629.
19. Allen, J. P., Artz, K., Lin, X., Williams, J. C., Ivancich, A., Albouy, D., Mattioli, T. A., Fetsch, A., Kuhn, M., and Lubitz, W. (1996) Effects of hydrogen bonding to a bacteriochlorophyll-bacteriopheophytin dimer in reaction centers from Rhodobacter sphaeroides. Biochemistry 35, 6612-6619.
20. Metz, J. G., Nixon, P. J., Rogner, M., Brudvig, G. W., and Diner, B. A. (1989) Directed alteration of the D1 polypeptide of photosystem II: Evidence that tyrosine-161 is the redox component, Z, connecting the oxygen-evolving complex to the primary electron donor, P680. Biochemistry 28, 6960-6969.
21. Biesiadka, J., Loll, B., Kern, J., Irrgang, K. D., and Zouni, A. (2004) Crystal structure of cyanobacterial photosystem II at 3.2 Å resolution: A closer look at the Mn-cluster. Phys. Chem. Chem. Phys. 6, 4733-4736.
22. Noguchi, T., Tomo, T., and Inoue, Y. (1998) Fourier transform infrared study of the cation radical of P680 in the photosystem II reaction center: Evidence for charge derealization on the chlorophyll dimmer. Biochemistry 37, 13614-13625.
23. Ishikita, H., Loll, B., Biesiadka, J., Kern, J., Irrgang, K. D., Zouni, A., Saenger, W., and Knapp, E. W. (2007) Function of two β-carotenes near the D1 and D2 proteins in photosystem II dimers. Biochim. Biophys. Acta 1767, 79-87.
24. - state in photosystem II. Biochemistry 36, 12053-12061.
25. Sugiura, M., Boussac, A., Noguchi, T., and Rappaport, F. (2008) Influence of histidine-198 of the D1 subunit on the properties of the primary electron donor, P680, of photosystem II in Thermosynechococcus elongatus. Biochim. Biophys. Acta 1777, 331-342.