Defining linkages between the GSC and NSF's LTER program: How the Ecological Metadata Language (EML) relates to GCDML and other outcomes

OMICS A Journal of Integrative Biology

Volumn 12, Issue 2, 2008, Pages 151-156

  Gil, Inigo San ^a   Sheldon, Wade ^b   Schmidt, Tom ^c   Servilla, Mark ^a   Aguilar, Raul ^d   Gries, Corinna ^d   Gray, Tanya ^e   Field, Dawn ^e   Cole, James ^c   Pan, Jerry Yun ^f   Palanisamy, Giri ^f   Henshaw, Donald ^g   O'Brien, Margaret ^h   Kinkel, Linda ⁱ   McMahon, Katherine ^j   Kottmann, Renzo ^k   Amaral Zettler, Linda ^l   Hobbie, John ^m   Goldstein, Philip ⁿ   Guralnick, Robert P ⁿ   Brunt, James ^a   Michener, William K ^a   more..

^a UNIVERSITY OF NEW MEXICO   (United States)

^b UNIVERSITY OF GEORGIA   (United States)

^c Michigan State University ^*  (United States)

^d ARIZONA STATE UNIVERSITY   (United States)

^e CENTRE FOR ECOLOGY AND HYDROLOGY   (United Kingdom)

^f OAK RIDGE NATIONAL LABORATORY   (United States)

^g USDA FOREST SERVICE   (United States)

^h UNIVERSITY OF CALIFORNIA   (United States)

ⁱ UNIVERSITY OF MINNESOTA   (United States)

^j University of Wisconsin Madison   (United States)

^k JACOBS UNIVERSITY BREMEN   (Germany)

^l MARINE BIOLOGICAL LABORATORY   (United States)

^m ECOSYSTEMS CENTER   (United States)

ⁿ UNIVERSITY OF COLORADO   (United States)

more..

Author keywords

[No Author keywords available]

Indexed keywords

CONFERENCE PAPER; DATA ANALYSIS; ECOSYSTEM; GENOMICS; OUTCOME ASSESSMENT; PRIORITY JOURNAL; QUALITY CONTROL; STANDARD;

DATABASES, GENETIC; GENOME; PROGRAMMING LANGUAGES;

EID: 45749117940     PISSN: 15362310     EISSN: None     Source Type: Journal    
DOI: 10.1089/omi.2008.0015     Document Type: Conference Paper

References (16)

1. Aguilar, R., Gries, C., and San Gil, I. (2008). LTER Metadata Editor Project. (http://intranet.lternet.edu/im/project/Metadata Editor).
2. Amaral, L. (2008). (http://www.nsf.gov/awardsearch/show Award.do?AwardNumber=0717390).
3. Field, D., Morrison, N., et al. (2006). Meeting Report: eGenomics: Cataloguing our Complete Genome Collection II. OMICS 10, 100-104.
4. Field, D., et al. (2008). Towards a richer description of our complete collection of genomes and metagenomes: the "Minimal Information about a Genome Sequence." Nat Biotechnol 26, 541-547.
5. Jacob, C., Brent, A.D., Benson, B.J., Newton, R.J., and McMahon, K.D. (2007). Proc. 9th World Multiconference on Systematics, Cybernetics and Informatics.
6. Jones, M., et al. (2001). EML - http://knb.ecoinformatics.org/ software/eml/eml-2.0.1/index.html
7. Kinkel, L. (2008). Spatial Variation, Diversity and Genetic Composition of Microbes in Prairie Soils (http://www.cedarcreek. umn.edu/microbo/index.htm).
8. Kottmann, R., Gray, T., et al. (2008). A standard MIGS/MIMS compliant XML Schema: Towards the development of the Genomic Contextual Data Markup Language (GCDML). OMICS (this issue).
9. LTER Information Managers Executive Committee (2005). http://intranet.lternet.edu/im/im_requirements/im_review_criteria
10. Michener, W.K., Brunt, J.W., Helly, J.J., Kirchner, T.B., Stafford, S.G. (1997). Nongeospatial metadata for the ecological sciences. Ecol Appl 7, 330-342.
11. Microbial LTER Project. (1999). (http://www.lternet.edu/ microbial_ecology/).
12. Murray-Rust, P., and Rzepa, H.S. (2002). STMML. A markup language for scientific, technical, and medical publishing. Data Sci J 1, 128-192.
13. San Gil, I., and Baker, K. (2007). Databits. http://intranet.lnternet. edu/archives/documents/Newsletters/DataBits/07fall/#fa2
14. Sheldon, W.M., Moran, M.A., and Hollibaugh, J.T. (2002). Efforts to link ecological metadata with bacterial gene sequences at the Sapelo Island Microbial Observatory. Pages 402-407 in: Proceedings of the 6th World Multiconference on Systemics, Cybernetics, and Informatics. Information Systems Development II. International Institute of Informatics and Systemics, Orlando, Florida.
15. Sheldon, W.M., and Moran, M.A. (2001). Sapelo Island Microbial Observatory Environmental Sequence Database (http:// simo.marsci.uga.edu/ public_db/).
16. Neal, P., Patterson, D., and Bordenstein, S. (2006). MICROBIS: The ICoMM Marine Microbes Database (http://icomm.mbl.edu/microbis/).