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Volumn 395, Issue 2-3, 2008, Pages 298-310

Property matching and weighted matching

Author keywords

Pattern matching; Position weight matrices; Weighted indexing; Weighted swap matching

Indexed keywords

BIOCHEMISTRY; BIOPHYSICS; COMPUTATIONAL GEOMETRY; INDEXING (OF INFORMATION); MOLECULAR BIOLOGY; PATTERN MATCHING; PIGMENTS;

EID: 45749098161     PISSN: 03043975     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tcs.2008.01.006     Document Type: Article
Times cited : (40)

References (37)
  • 1
    • 35248829485 scopus 로고    scopus 로고
    • A. Amir, Y. Aumann, R. Cole, M. Lewenstein, E. Porat, Function matching: Algorithms, applications and a lower bound, in: Proc. of the 30th International Colloquium on Automata, Languages and Programming, ICALP, 2003, pp. 929-942
    • A. Amir, Y. Aumann, R. Cole, M. Lewenstein, E. Porat, Function matching: Algorithms, applications and a lower bound, in: Proc. of the 30th International Colloquium on Automata, Languages and Programming, ICALP, 2003, pp. 929-942
  • 4
    • 35248885683 scopus 로고    scopus 로고
    • A. Amir, A. Butman, M. Lewenstein, E. Porat, Real two dimensional scaled matching, in: Proc. 8th Workshop on Algorithms and Data Structures, WADS, 2003, pp. 353-364
    • A. Amir, A. Butman, M. Lewenstein, E. Porat, Real two dimensional scaled matching, in: Proc. 8th Workshop on Algorithms and Data Structures, WADS, 2003, pp. 353-364
  • 6
    • 0347937349 scopus 로고    scopus 로고
    • Alphabet independent and dictionary scaled matching
    • Amir A., and Calinescu G. Alphabet independent and dictionary scaled matching. Journal of Algorithms 36 (2000) 34-62
    • (2000) Journal of Algorithms , vol.36 , pp. 34-62
    • Amir, A.1    Calinescu, G.2
  • 8
    • 35048830395 scopus 로고    scopus 로고
    • A. Amir, E. Eisenberg, E. Porat, Swap and mismatch edit distance, in: Proc. 12th Annual European Symposium on Algorithms, ESA, 2004, pp. 16-27
    • A. Amir, E. Eisenberg, E. Porat, Swap and mismatch edit distance, in: Proc. 12th Annual European Symposium on Algorithms, ESA, 2004, pp. 16-27
  • 16
    • 45749142574 scopus 로고    scopus 로고
    • R. Cole, R. Harihan, Randomized swap matching in o (m log m log | σ |) time, Technical Report TR1999-789, New York University, Courant Institute, September 1999
    • R. Cole, R. Harihan, Randomized swap matching in o (m log m log | σ |) time, Technical Report TR1999-789, New York University, Courant Institute, September 1999
  • 18
    • 84957685983 scopus 로고    scopus 로고
    • M. Farach, S. Muthukrishnan, Perfect hashing for strings: Formalization and algorithms, in: Proc. 7th Combinatorial Pattern Matching Conference, 1996, pp. 130-140
    • M. Farach, S. Muthukrishnan, Perfect hashing for strings: Formalization and algorithms, in: Proc. 7th Combinatorial Pattern Matching Conference, 1996, pp. 130-140
  • 19
    • 33749231178 scopus 로고    scopus 로고
    • P. Ferragina, R. Grossi, Fast incremental text editing, in: Proc. 7th ACM-SIAM Symposium on Discrete Algorithms, 1995, pp. 531-540
    • P. Ferragina, R. Grossi, Fast incremental text editing, in: Proc. 7th ACM-SIAM Symposium on Discrete Algorithms, 1995, pp. 531-540
  • 20
    • 45749096362 scopus 로고    scopus 로고
    • Probabilistic and statistical properties of words: An overview
    • Gesine R., Sophie S., and Waterman M.S. Probabilistic and statistical properties of words: An overview. Journal of computationnal Biology 7 1-2 (2000) 1-46
    • (2000) Journal of computationnal Biology , vol.7 , Issue.1-2 , pp. 1-46
    • Gesine, R.1    Sophie, S.2    Waterman, M.S.3
  • 21
    • 0028197844 scopus 로고    scopus 로고
    • M. Gu, M. Farach, R. Beigel, An efficient algorithm for dynamic text indexing, in: Proc. 5th Annual ACM-SIAM Symposium on Discrete Algorithms, 1994, pp. 697-704
    • M. Gu, M. Farach, R. Beigel, An efficient algorithm for dynamic text indexing, in: Proc. 5th Annual ACM-SIAM Symposium on Discrete Algorithms, 1994, pp. 697-704
  • 22
    • 45749093484 scopus 로고    scopus 로고
    • C.S. Iliopoulos, L. Mouchard, K. Perdikuri, A. Tsakalidis, Computing the repetitions in a weighted sequence, in: Proceeding of the Prague Stringology Conference, 2003, pp. 91-98
    • C.S. Iliopoulos, L. Mouchard, K. Perdikuri, A. Tsakalidis, Computing the repetitions in a weighted sequence, in: Proceeding of the Prague Stringology Conference, 2003, pp. 91-98
  • 23
    • 84871043753 scopus 로고    scopus 로고
    • Motif extraction from weighted sequences
    • Proc. 11th Symposium on String Processing and Information Retrieval. Apostolico A., and Melucci M. (Eds). SPIRE, Springer
    • Iliopoulos C.S., Perdikuri K., Theodoridis E., Tsakalidis A., and Tsichlas K. Motif extraction from weighted sequences. In: Apostolico A., and Melucci M. (Eds). Proc. 11th Symposium on String Processing and Information Retrieval. SPIRE. LNCS vol. 3246 (2004), Springer 286-297
    • (2004) LNCS , vol.3246 , pp. 286-297
    • Iliopoulos, C.S.1    Perdikuri, K.2    Theodoridis, E.3    Tsakalidis, A.4    Tsichlas, K.5
  • 26
    • 35248830635 scopus 로고    scopus 로고
    • Simple linear work suffix array construction
    • Proc. 30th International Colloquium on Automata, Languages and Programming. ICALP 03
    • Kärkkäinen J., and Sanders P. Simple linear work suffix array construction. Proc. 30th International Colloquium on Automata, Languages and Programming. ICALP 03. LNCS vol. 2719 (2003) 943-955
    • (2003) LNCS , vol.2719 , pp. 943-955
    • Kärkkäinen, J.1    Sanders, P.2
  • 28
    • 0016494974 scopus 로고
    • An extension of the string-to-string correction problem
    • Lowrance R., and Wagner R.A. An extension of the string-to-string correction problem. Journal of the ACM (1975) 177-183
    • (1975) Journal of the ACM , pp. 177-183
    • Lowrance, R.1    Wagner, R.A.2
  • 29
    • 0016942292 scopus 로고
    • A space-economical suffix tree construction algorithm
    • McCreight E.M. A space-economical suffix tree construction algorithm. Journal of the ACM 23 (1976) 262-272
    • (1976) Journal of the ACM , vol.23 , pp. 262-272
    • McCreight, E.M.1
  • 30
    • 84957875060 scopus 로고
    • New results and open problems related to non-standard stringology
    • Proc. 6th Combinatorial Pattern Matching Conference, Springer-Verlag
    • Muthukrishnan S. New results and open problems related to non-standard stringology. Proc. 6th Combinatorial Pattern Matching Conference. Lecture Notes in Computer Science vol. 937 (1995), Springer-Verlag 298-317
    • (1995) Lecture Notes in Computer Science , vol.937 , pp. 298-317
    • Muthukrishnan, S.1
  • 31
    • 33744962566 scopus 로고    scopus 로고
    • S. Muthukrishnan, Efficient algorithms for document retrieval problems, in: Proc. 13th Annual ACM-SIAM Symposium on Discrete Algorithms, 2002, pp. 657-666
    • S. Muthukrishnan, Efficient algorithms for document retrieval problems, in: Proc. 13th Annual ACM-SIAM Symposium on Discrete Algorithms, 2002, pp. 657-666
  • 32
    • 0030419032 scopus 로고    scopus 로고
    • S.C. Sahinalp, U. Vishkin, Efficient approximate and dynamic matching of patterns using a labeling paradigm, in: Proc. 37th FOCS, 1996, pp. 320-328
    • S.C. Sahinalp, U. Vishkin, Efficient approximate and dynamic matching of patterns using a labeling paradigm, in: Proc. 37th FOCS, 1996, pp. 320-328
  • 33
    • 0027968068 scopus 로고
    • Clustal w: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., and Gibson T.J. Clustal w: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22 (1994) 4673-4680
    • (1994) Nucleic Acids Research , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 34
    • 0001704377 scopus 로고
    • On-line construction of suffix trees
    • Ukkonen E. On-line construction of suffix trees. Algorithmica 14 (1995) 249-260
    • (1995) Algorithmica , vol.14 , pp. 249-260
    • Ukkonen, E.1
  • 35
    • 0035895505 scopus 로고    scopus 로고
    • The sequence of the human genome
    • Celera Genomics Corporation
    • Venter J.C., and Celera Genomics Corporation. The sequence of the human genome. Science 291 (2001) 1304-1351
    • (2001) Science , vol.291 , pp. 1304-1351
    • Venter, J.C.1
  • 36
    • 84976666835 scopus 로고    scopus 로고
    • R.A. Wagner, On the complexity of the extended string-to-string correction problem, in: Proc. 7th ACM STOC, 1975, pp. 218-223
    • R.A. Wagner, On the complexity of the extended string-to-string correction problem, in: Proc. 7th ACM STOC, 1975, pp. 218-223
  • 37
    • 85043482370 scopus 로고    scopus 로고
    • P. Weiner, Linear pattern matching algorithm, in: Proc. 14 IEEE Symposium on Switching and Automata Theory, 1973, pp. 1-11
    • P. Weiner, Linear pattern matching algorithm, in: Proc. 14 IEEE Symposium on Switching and Automata Theory, 1973, pp. 1-11


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.