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Volumn 36, Issue 10, 2008, Pages 3463-3473

Insights into anti-termination regulation of the hut operon in Bacillus subtilis: Importance of the dual RNA-binding surfaces of HutP

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; HISTIDINE; HISTIDINE UTILIZING PROTEIN; MESSENGER RNA; RNA BINDING PROTEIN; ANTITERMINATOR PROTEINS, BACTERIA; BACTERIAL PROTEIN;

EID: 45549107075     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkn199     Document Type: Article
Times cited : (14)

References (28)
  • 1
    • 0027458419 scopus 로고
    • Reconstitution of Bacillus subtilis trp attenuation in vitro with TRAP, the trp RNA-binding attenuation protein
    • Babitzke,P. and Yanofsky,C. (1993) Reconstitution of Bacillus subtilis trp attenuation in vitro with TRAP, the trp RNA-binding attenuation protein. Proc. Natl Acad Sci. USA, 90 133-137.
    • (1993) Proc. Natl Acad Sci. USA , vol.90 , pp. 133-137
    • Babitzke, P.1    Yanofsky, C.2
  • 2
    • 0025052636 scopus 로고
    • Transcriptional antitermination in the bgl operon of E. coli is modulated by a specific RNA binding protein
    • Houman,F., Diaz-Torres,M.R. and Wright,A. (1990) Transcriptional antitermination in the bgl operon of E. coli is modulated by a specific RNA binding protein. Cell, 62, 1153-1163.
    • (1990) Cell , vol.62 , pp. 1153-1163
    • Houman, F.1    Diaz-Torres, M.R.2    Wright, A.3
  • 3
    • 0026465459 scopus 로고
    • Specificity determinants and structural features in the RNA target of the bacterial antiterminator proteins of the BglG/SacY family
    • Aymerich,S. and Steinmetz,M. (1992) Specificity determinants and structural features in the RNA target of the bacterial antiterminator proteins of the BglG/SacY family. Proc. Natl Acad. Sci. USA, 8 10410-10414.
    • (1992) Proc. Natl Acad. Sci. USA , vol.8 , pp. 10410-10414
    • Aymerich, S.1    Steinmetz, M.2
  • 4
    • 0029763998 scopus 로고    scopus 로고
    • In vitro reconstitution of transcriptional attenuation by the SacT and SacY proteins of Bacillus subtilis
    • Arnaud,M.D., Debarbouille,M., Rapoport,G., Saier,M.H. Jr. and Reizer,J. (1996) In vitro reconstitution of transcriptional attenuation by the SacT and SacY proteins of Bacillus subtilis. J. Biol. Chem., 271, 18966-18972.
    • (1996) J. Biol. Chem , vol.271 , pp. 18966-18972
    • Arnaud, M.D.1    Debarbouille, M.2    Rapoport, G.3    Saier Jr., M.H.4    Reizer, J.5
  • 5
    • 0029855920 scopus 로고    scopus 로고
    • Function of RNA secondary structures in transcriptional attenuation of the Bacillus subtilis pyr operon
    • Lu,Y., Turner,R.J. and Switzer,R.L. (1996) Function of RNA secondary structures in transcriptional attenuation of the Bacillus subtilis pyr operon. Proc. Natl Acad. Sci. USA, 93, 14462-14467.
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 14462-14467
    • Lu, Y.1    Turner, R.J.2    Switzer, R.L.3
  • 6
    • 0031058131 scopus 로고    scopus 로고
    • The lac operon of Lactobacillus casei contains lacT, a gene coding for a protein of the Bg1G family of transcriptional antiterminators
    • Alpert,C.A. and Siebers,U. (1997) The lac operon of Lactobacillus casei contains lacT, a gene coding for a protein of the Bg1G family of transcriptional antiterminators. J. Bacteriol. 179, 1555-1562.
    • (1997) J. Bacteriol , vol.179 , pp. 1555-1562
    • Alpert, C.A.1    Siebers, U.2
  • 7
    • 0030070778 scopus 로고    scopus 로고
    • A dual role for the Bacillus subtilis glpD leader and the GlpP protein in the regulated expression of glpD: Antitermination and control of mRNA stability
    • Glatz,B., Nilsson,R.P., Rutberg,L. and Rutberg,B. (1996) A dual role for the Bacillus subtilis glpD leader and the GlpP protein in the regulated expression of glpD: Antitermination and control of mRNA stability. Mol. Microbiol., 19, 319-328.
    • (1996) Mol. Microbiol , vol.19 , pp. 319-328
    • Glatz, B.1    Nilsson, R.P.2    Rutberg, L.3    Rutberg, B.4
  • 8
    • 0026713448 scopus 로고
    • Analysis of the transcriptional activity of the hut promoter in Bacillus subtilis and identification of a cis-acting regulatory region associated with catabolite repression downstream from the site of transcription
    • Oda,M., Katagai,T., Tomura,D., Shoun,H., Hoshino,T. and Furukawa,T. (1992) Analysis of the transcriptional activity of the hut promoter in Bacillus subtilis and identification of a cis-acting regulatory region associated with catabolite repression downstream from the site of transcription. Mol. Microbiol., 6, 2573-2582.
    • (1992) Mol. Microbiol , vol.6 , pp. 2573-2582
    • Oda, M.1    Katagai, T.2    Tomura, D.3    Shoun, H.4    Hoshino, T.5    Furukawa, T.6
  • 9
    • 0028144755 scopus 로고
    • Analysis of Bacillus subtilis hut operon expression indicates that histidine-dcpendent induction is mediated primarily by transcriptional antitermination and that amino acid repression is mediated by two mechanisms:rEgulation of transcription initiation and inhibition of histidine transport
    • Wray,L.V. Jr. and Fisher,S.H. (1994) Analysis of Bacillus subtilis hut operon expression indicates that histidine-dcpendent induction is mediated primarily by transcriptional antitermination and that amino acid repression is mediated by two mechanisms:rEgulation of transcription initiation and inhibition of histidine transport. J. Bacteriol., 176, 5466-5473.
    • (1994) J. Bacteriol , vol.176 , pp. 5466-5473
    • Wray Jr., L.V.1    Fisher, S.H.2
  • 10
    • 0034094821 scopus 로고    scopus 로고
    • cis Acting regulatory sequences for antitermination in the transcript of the Bacillus subtilis hut operon and histidine-dependent binding of HutP to the transcript containing the regulatory sequences
    • Oda,M., Kobayashi,N., Ito,A., Kurusu,Y. and Taira,K. (2000) cis Acting regulatory sequences for antitermination in the transcript of the Bacillus subtilis hut operon and histidine-dependent binding of HutP to the transcript containing the regulatory sequences. Mol. Microbiol., 35, 1244-1254.
    • (2000) Mol. Microbiol , vol.35 , pp. 1244-1254
    • Oda, M.1    Kobayashi, N.2    Ito, A.3    Kurusu, Y.4    Taira, K.5
  • 11
    • 0142150138 scopus 로고    scopus 로고
    • Allosteric activation of HutP protein, that regulates transcription of hut operon in Bacillus subtilis, mediated by various analogs of histidine
    • Kumarevel,T.S., Mizuno,H. and Kumar,P.K.R. (2003) Allosteric activation of HutP protein, that regulates transcription of hut operon in Bacillus subtilis, mediated by various analogs of histidine. Nucleic Acids Res. Suppl., 3, 199-200.
    • (2003) Nucleic Acids Res. Suppl , vol.3 , pp. 199-200
    • Kumarevel, T.S.1    Mizuno, H.2    Kumar, P.K.R.3
  • 12
    • 3142566497 scopus 로고    scopus 로고
    • Crystal structure of activated HutP: An RNA binding protein that regulates Transcription of the hut operon in Bacillus subtilis
    • Kumarevel,T.S., Fujimoto,Z., Karthe,P., Oda,M., Mizuno,H. and Kumar,P.K.R. (2004) Crystal structure of activated HutP: An RNA binding protein that regulates Transcription of the hut operon in Bacillus subtilis. Structure, 12, 1269-1280.
    • (2004) Structure , vol.12 , pp. 1269-1280
    • Kumarevel, T.S.1    Fujimoto, Z.2    Karthe, P.3    Oda, M.4    Mizuno, H.5    Kumar, P.K.R.6
  • 13
    • 3242738656 scopus 로고    scopus 로고
    • Identification of important chemical groups of the hut mRNA for HutP interactions that regulate the hut operon in Bacillus subtilis
    • Kumarevel,T.S. Gopinath,S.C.B., Nishikawa,S., Mizuno,H. and Kumar,P.K.R. (2004) Identification of important chemical groups of the hut mRNA for HutP interactions that regulate the hut operon in Bacillus subtilis. Nucleic Acids Res., 32, 3904-3912.
    • (2004) Nucleic Acids Res , vol.32 , pp. 3904-3912
    • Kumarevel, T.S.1    Gopinath, S.C.B.2    Nishikawa, S.3    Mizuno, H.4    Kumar, P.K.R.5
  • 14
    • 27244452610 scopus 로고    scopus 로고
    • Characterization of the metal ion binding site in the anti-terminator protein, HutP, of Bacillus subtilis
    • Kumarevel,T.S., Mizuno,H. and Kumar,P.K.R. (2005) Characterization of the metal ion binding site in the anti-terminator protein, HutP, of Bacillus subtilis. Nucleic Acids Res., 33, 5494-5502.
    • (2005) Nucleic Acids Res , vol.33 , pp. 5494-5502
    • Kumarevel, T.S.1    Mizuno, H.2    Kumar, P.K.R.3
  • 16
    • 0024828055 scopus 로고
    • A guide for probing native small nuclear RNA and ribonucleoprotein structures
    • Krol,A. and Carbon,P. (1989) A guide for probing native small nuclear RNA and ribonucleoprotein structures. Methods Enzymol., 180, 212-227.
    • (1989) Methods Enzymol , vol.180 , pp. 212-227
    • Krol, A.1    Carbon, P.2
  • 17
    • 24744471429 scopus 로고    scopus 로고
    • Human vault-associated non-coding RNAs bind to mitoxantrone, a chemotherapeutic compound
    • Gopinath,S.C.B., Matsugami,A., Katahira,M. and Kumar,P.K.R. (2005) Human vault-associated non-coding RNAs bind to mitoxantrone, a chemotherapeutic compound. Nucleic Acids Res., 33, 4874-4881.
    • (2005) Nucleic Acids Res , vol.33 , pp. 4874-4881
    • Gopinath, S.C.B.1    Matsugami, A.2    Katahira, M.3    Kumar, P.K.R.4
  • 18
    • 0014272140 scopus 로고
    • Nutritional factors influencing the development of competence in the Bacillus subtilis transformation system
    • Wilson,G.A. and Bott,K.F. (1968) Nutritional factors influencing the development of competence in the Bacillus subtilis transformation system. J. Bacteriol., 95, 1439-1449.
    • (1968) J. Bacteriol , vol.95 , pp. 1439-1449
    • Wilson, G.A.1    Bott, K.F.2
  • 19
    • 0014410024 scopus 로고
    • Induction and repression of the Histidine-degrading enzymes of Bacillus subtilis
    • Chasin,L. and Magasanik,B. (1969) Induction and repression of the Histidine-degrading enzymes of Bacillus subtilis. J. Biol. Chem., 243, 5165-5178.
    • (1969) J. Biol. Chem , vol.243 , pp. 5165-5178
    • Chasin, L.1    Magasanik, B.2
  • 21
    • 0035177219 scopus 로고    scopus 로고
    • A number of real-space torsional angle refinement techniques for proteins, nucleic acids, ligands and solvent
    • Oldfield,T.J. (2001) A number of real-space torsional angle refinement techniques for proteins, nucleic acids, ligands and solvent. Acta Cryst. D, 57, 82-94.
    • (2001) Acta Cryst. D , vol.57 , pp. 82-94
    • Oldfield, T.J.1
  • 22
    • 0003845223 scopus 로고    scopus 로고
    • DeLano Scientific, San Carlos, CA, USA, 18 April, date last accessed
    • DeLano,W.L. (2002) The PyMOL Molecular Graphics System. DeLano Scientific, San Carlos, CA, USA. http://www.pymol.org. (18 April 2008, date last accessed)
    • (2002) The PyMOL Molecular Graphics System
    • DeLano, W.L.1
  • 23
    • 0032831634 scopus 로고    scopus 로고
    • Relationship between internucleotide linkage geometry and the stability of RNA
    • Soukup,G.A. and Breaker,R.R. (1999) Relationship between internucleotide linkage geometry and the stability of RNA. RNA, 5, 1308-1325.
    • (1999) RNA , vol.5 , pp. 1308-1325
    • Soukup, G.A.1    Breaker, R.R.2
  • 24
    • 0038210214 scopus 로고    scopus 로고
    • ?Mendal,M., Boese,B., Barrick,J.E., Winkler,W.C. and Breaker,R.R. (2003) Ribo- switches control fundamental biochemical pathways in Bacillus subtilis and other bacteria. Cell, 113, 577-586.
    • ?Mendal,M., Boese,B., Barrick,J.E., Winkler,W.C. and Breaker,R.R. (2003) Ribo- switches control fundamental biochemical pathways in Bacillus subtilis and other bacteria. Cell, 113, 577-586.
  • 25
    • 0032943569 scopus 로고    scopus 로고
    • A novel mutation of the Bacillus subtilis hut operon that relieves both catabolite repression and amino acid repression
    • Eda,S., Hoshino,T. and Oda,M. (1999) A novel mutation of the Bacillus subtilis hut operon that relieves both catabolite repression and amino acid repression. Appl. Microbiol. Biotechnol., 51, 85-90.
    • (1999) Appl. Microbiol. Biotechnol , vol.51 , pp. 85-90
    • Eda, S.1    Hoshino, T.2    Oda, M.3
  • 26
  • 27
    • 45549105481 scopus 로고    scopus 로고
    • ?Daarte,C.M. and Pyle,A.M. (1998) RNA structure comparison, motif search and discovery using a reduced representation of RNA conformational space. J. Mol. Biol., 284, 1465-1478.
    • ?Daarte,C.M. and Pyle,A.M. (1998) RNA structure comparison, motif search and discovery using a reduced representation of RNA conformational space. J. Mol. Biol., 284, 1465-1478.
  • 28
    • 10044241881 scopus 로고    scopus 로고
    • Bacillus subtilis TRAP binds to its target by a 5′ to 3′ directional mechanism
    • Barbolina,M.V., Li,X. and Gollnick,P. (2005) Bacillus subtilis TRAP binds to its target by a 5′ to 3′ directional mechanism. J. Mol. Biol., 345, 667-679.
    • (2005) J. Mol. Biol , vol.345 , pp. 667-679
    • Barbolina, M.V.1    Li, X.2    Gollnick, P.3


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