Parallel expression profiling of barley - Stem rust interactions

Functional and Integrative Genomics

Volumn 8, Issue 3, 2008, Pages 187-198

  Zhang, Ling ^a   Castell Miller, Claudia ^b   Dahl, Stephanie ^b   Steffenson, Brian ^b   Kleinhofs, Andris ^a  

^a WASHINGTON STATE UNIVERSITY   (United States)

^b UNIVERSITY OF MINNESOTA   (United States)

Author keywords

Barley; Disease resistance; Expression profiling; Microarray data; Puccinia graminis f. sp. tritici; Rust resistance

Indexed keywords

GENE PRODUCT; MESSENGER RNA; PROTEIN RPG1;

ARTICLE; BARLEY; FUNGAL VIRULENCE; FUNGUS; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENE FUNCTION; GENE INDUCTION; GENE REPRESSION; GENETIC IDENTIFICATION; GENETIC RESISTANCE; GENETIC SUSCEPTIBILITY; GROWTH INHIBITION; HOST RESISTANCE; HYPERSENSITIVITY REACTION; MOLECULAR MECHANICS; MOLECULAR PROBE; NONHUMAN; PATHOTYPE; PLANT PATHOGEN INTERACTION; PRIORITY JOURNAL; PUCCINIA GRAMINIS; SIGNAL TRANSDUCTION; STEM RUST; TRANSGENIC PLANT;

BASIDIOMYCOTA; CLUSTER ANALYSIS; GENE EXPRESSION PROFILING; GENES, PLANT; HORDEUM; IMMUNITY, NATURAL; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PLANT DISEASES; PLANTS, GENETICALLY MODIFIED; RNA, MESSENGER; RNA, PLANT;

HORDEUM; PUCCINIA GRAMINIS F. SP. TRITICI; UREDINALES;

EID: 45449101902     PISSN: 1438793X     EISSN: 14387948     Source Type: Journal    
DOI: 10.1007/s10142-007-0069-0     Document Type: Article

References (34)

1. Axtell MJ, Chisholm ST, Dahlbeck D, Staskawicz BJ (2003) Genetic and molecular evidence that the Pseudomonas syringae type III effector protein AvrRpt2 is a cysteine protease. Mol Microbiol 49:1537-1546
2. Boddu J, Cho S, Kruger WM, Muehlbauer GJ (2006) Transcriptome analysis of the barley- Fusarium graminearum interaction. Mol Plant Microbe Interact 19:407-417
3. Caldo RA, Nettleton D, Wise RP (2004) Interaction-dependent gene expression in Mla- specified response to barley powdery mildew. Plant Cell 16:2514-2528
4. Caldo RA, Nettleton D, Peng J, Wise RP (2006) Stage-specific suppression of basal defense discriminates barley plants containing fast- and delayed-acting Mla powdery mildew resistance alleles. Mol Plant Microbe Interact 19:939-947
5. Close TJ, Wanamaker SI, Caldo RA, Turner SM, Ashlock DA, Dickerson JA, Wing RA, Muehlbauer GJ, Kleinhofs A, Wise RP (2004) A new resource for cereal genomics: 22K barley GeneChip comes of age. Plant Physiol 134:960-968
6. Druka A, Muehlbauer G, Druka I, Caldo R, Baumann U, Rostoks N, Schreiber A, Wise R, Close T, Kleinhofs A, Graner A, Schulman A, Langridge P, Sato K, Hayes P, McNicol J, Marshall D, Waugh R (2006) An atlas of gene expression from seed to seed through barley development. Funct Integr Genomics 6:202-211
7. Hein I, Barciszewska-Pacak M, Hrubikova K, Williamson S, Dinesen M, Soenderby IE, Sundar S, Jarmolowski A, Shirasu K, Lacomme C (2005) Virus-induced gene silencing-based functional characterization of genes associated with powdery mildew resistance in barley. Plant Physiol 138:2155-2164
8. Holzberg S, Brosio P, Gross C, Pogue GP (2002) Barley stripe mosaic virus-induced gene silencing in a monocot plant. Plant J 30:315-327
9. Horvath H, Rostoks N, Brueggeman R, Steffenson B, von Wettstein D, Kleinhofs A (2003) Genetically engineered stem rust resistance in barley using the Rpg1 gene. Proc Natl Acad Sci USA 100:364-369
10. Hotson A, Mudgett MB (2004) Cysteine proteases in phytopathogenic bacteria: Identification of plant targets and activation of innate immunity. Curr Opin Plant Biol 7:384-390
11. Hotson A, Chosed R, Shu H, Orth K, Mudgett MB (2003) Xanthomonas type III effector XopD targets SUMO-conjugated proteins in planta. Mol Microbiol 50:377-389
12. Jin Y, Steffenson BJ, Fetch TG (1994) Sources of resistance to pathotype QCC of Puccinia graminis f. sp. tritici in barley. Crop Sci 34:285-288
13. Leek JT, Monsen E, Dabney AR, Storey JD (2006) EDGE: Extraction and analysis of differential gene expression. Bioinformatics 22:507-508
14. Lin KC, Rushnell WR, Smith AG, Szabo LJ (1998) Temporal accumulation patterns of defence response gene transcripts in relation to resistant reactions in oat inoculated with Puccinia graminis. Physiol Mol Plant Pathol 52:95-114
15. Marrs KA (1996) The functions and regulation of glutathione S-transferases in plants. Annu Rev Plant Physiol Plant Mol Biol 47:127-158
16. Mauch-Mani B, Mauch F (2005) The role of abscisic acid in plant-pathogen interactions. Curr Opin Plant Biol 8:409-414
17. McGee JD, Hamer JE, Hodges TK (2001) Characterization of a PR-10 pathogenesis-related gene family induced in rice during infection with Magnaporthe grisea. Mol Plant Microbe Interact 14:877-886
18. Moerschbacher BM, Noll UM, Flott BE, Reisener HJ (1988) Lignin biosynthetic enzymes in stem rust infected, resistant and susceptible near-isogenic wheat lines. Physiol Mol Plant Pathol 33:33-46
19. Moiseyev GP, Beintema JJ, Fedoreyeva LI, Yakovlev GI (1994) High sequence similarity between a ribonuclease from ginseng callus and fungus-elicited proteins from parsley indicates that intracellular pathogenesis-related proteins are ribonucleases. Planta 193:470-472
20. Nirmala J, Dahl S, Steffenson BJ, Kannangara CG, von Wettstein D, Chen X, Kleinhofs A (2007) Proteolysis of the barley receptor-like protein kinase RPG1 by a proteasome pathway is correlated with Rpg1 - mediated stem rust resistance. Proc Natl Acad Sci USA 104:10276-10281
21. Rezzonico E, Flury N, Meins F Jr, Beffa R (1998) Transcriptional downregulation by abscisic acid of pathogenesis-related beta-1,3-glucanase genes in tobacco cell cultures. Plant Physiol 117:585-592
22. Roden J, Eardley L, Hotson A, Cao Y, Mudgett MB (2004) Characterization of the Xanthomonas AvrXv4 effector, a SUMO protease translocated into plant cells. Mol Plant Microbe Interact 17:633-643
23. Rostoks N, Steffenson BJ, Kleinhofs A (2004) Structure and expression of the barley stem rust resistance gene Rpg1 messenger RNA. Physiol Mol Plant Pathol 64:91-101
24. Scofield SR, Huang L, Brandt AS, Gill BS (2005) Development of a virus-induced gene-silencing system for hexaploid wheat and its use in functional analysis of the Lr21-mediated leaf rust resistance pathway. Plant Physiol 138:2165-2173
25. Sellam MA, Wilcoxson RD (1976) Development of Puccinia graminis f. sp. tritici on resistant and susceptible barley cultivars. Phytopathology 66:667-668
26. Shao F, Golstein C, Ade J, Stoutemyer M, Dixon JE, Innes RW (2003) Cleavage of Arabidopsis PBS1 by a bacterial type III effector. Science 301:1230-1233
27. Shen LS, Gong J, Caldo RA, Nettleton D, Cook D, Wise RP, Dickerson JA (2005) BarleyBase - an expression profiling database for plant genomics. Nucleic Acids Res 33:614-618
28. Staples RC (2000) Research on the rust fungi during the twentieth century. Annu Rev Phytopathol 38:49-69
29. Steffenson BJ (1992) Analysis of durable resistance to stem rust in barley. Euphytica 63:153-167
30. Steiner-Lange S, Fischer A, Boettcher A, Rouhara I, Liedgens H, Schmelzer E, Knogge W (2003) Differential defense reactions in leaf tissues of barley in response to infection by Rhynchosporium secalis and to treatment with a fungal avirulence gene product. Mol Plant Microbe Interact 16:893-902
31. Storey JD, Tibshirani R (2003) Statistical significance for genomewide studies. Proc Natl Acad Sci USA 100:9440-9445
32. Storey JD, Xiao W, Leek JT, Tompkins RG, Davis RW (2005) Significance analysis of time course microarray experiments. Proc Natl Acad Sci USA 102:12837-12842
33. Tiburzy R, Reisener HJ (1990) Resistance of wheat to Puccinia graminis f.sp. tritici: Association of the hypersensitive reaction with the cellular accumulation of lignin-like material and callose. Physiol Mol Plant Pathol 36:109-120
34. Zhang L, Fetch T, Nirmala J, Schmierer D, Brueggeman R, Steffenson B, Kleinhofs A (2006) Rpr1, a gene required for Rpg1 -dependent resistance to stem rust in barley. Theor Appl Genet 113:847-855