Community structure of eukaryotes in rice roots estimated by pcr-dgge pattern and sequence analyses

Soil Science and Plant Nutrition

Volumn 50, Issue 4, 2004, Pages 583-589

  Ikenaga, Makoto ^a,b   Asakawa, Susumu ^b   Muraoka, Yoshitetsu ^b   Kimura, Makoto ^b  

^a FLORIDA INTERNATIONAL UNIVERSITY   (United States)

^b NAGOYA UNIVERSITY   (Japan)

Author keywords

Ciliophora; Dgge; Eukaryote; Mastigophorea; Oomycetes; Polymyxa graminis; Rice root

Indexed keywords

ASCOMYCOTA; CHLOROPHYTA; CILIOPHORA; EUKARYOTA; FUNGI; MASTIGOMYCOTA; MASTIGOPHORA (FLAGELLATES); MYXOGASTRIA; OOMYCETES; PHYCOMYCETES; POLYMYXA; POLYMYXA GRAMINIS;

EID: 4544376551     PISSN: 00380768     EISSN: 17470765     Source Type: Journal    
DOI: 10.1080/00380768.2004.10408515     Document Type: Article

References (23)

1. Armstrong W 1967: The use of polarography in the assay of oxygen diffusing from roots in anaerobic media. Physiol. Plant., 20, 540-553.
2. Armstrong W 1971: Radial oxygen losses from intact rice roots as affected by distance from the apex, respiration and waterlogging. Physiol. Plant., 25, 192-197.
3. Bruehl GW 1987: Soilborne viruses. In Soilborne Plant Pathogens. pp. 254-276, Macmillan Publishing Company, New York.
4. Ikenaga M, Muraoka Y, Toyota K, and Kimura M 2002: Community structure of the microbiota associated with nodal roots of rice plants along with the growth stages: Estimation by PCR-RFLP analysis. BioI. Fertil. Soils, 36, 397-404.
5. Ikenaga M, Asakawa S, Muraoka Y, and Kimura M 2003a: Bacterial communities associated with nodal roots of rice plants along with the growth stages: Estimation by PCR-DGGE and sequence analyses. Soil Sci. Plant Nutr., 49, 591-602.
6. Ikenaga M, Asakawa S, Muraoka M, and Kimura M 2003b: Phylogenetic study on CTO primer-amplified ammonia-oxidizing bacteria and f)-Proteobacteria associated with rice roots grown in a flooded paddy soil. Soil Sci. Plant Nutr., 49, 719-727.
7. Jung T and Blaschke H 1996: Phytophtora root rot in declining forest trees. Phyton, 36, 95-102.
8. Kawata S, Ishihara K, and Iizuka H 1964: Several microorganisms on or in rice roots. J. Sci. Soil Manure, Jpn, 51, 8589.
9. Kimura M, Wada H, and Takai Y 1980: Studies on the rhizosphere of paddy rice (Part 7). The microorganisms in the root surface of paddy rice (I) J Sci. Soil Manure, Jpn., 51, 85-89.
10. Kumada K 1949: Investigation on the rhizosphere of rice seedling. Part 1. On the microscopic structure of the rhizosphere and oxidative power of root. J. Sci. Soil Manure, Jpn., 19, 119-124.
11. Miyashita K, Wada H, and Takai Y 1977: Decomposition process of the intact roots of rice plant (part 2). Invasion of soil microorganisms. J. Sci. Soil Manure, Jpn, 48, 558-563.
12. Miyashita K, Wada H, and Takai Y 1982: Measurement of microbial number and biomass in rice roots. J. Sci. Soil Manure, Jpn, 53, 39-44.
13. Muraoka Y, Hamakawa E, Toyota K, and Kimura M 2000: Observation of microbial colonization on the surface of rice roots along with their development and degradation. Soil Sci. Plant Nutr., 46, 491-502.
14. Roger PA and Kurihara Y 1991: The floodwater biology of tropical wetland rice fields. In Soil management for sustainable rice production in the tropics. In International Board for Soil Research and Management. Monograph No.2, Eds., Panichapong Sand Wada H, pp. 211-233.
15. Stanier RY, Ingraham JL, Wheelis ML, and Painter PR 2001: Protozoa. In The Microbial World (fifth edition). pp. 195-213, Baihuukan, Tokyo.
16. Takahashi T 2000: Soil protozoa. In New Soil Microorganisms (VII), Ecology of Protozoa and Algac in Soil. Ed., Hattori T, pp. 5-54, Hakuyuusha, Tokyo.
17. Takahashi T and Suhama M 1991: Ciliated protozoan fauna in paddy field. Bulletin Jpn Sci. Microb. Ecol., 6, 103-115.
18. Themann K, Werres S, Luttmann R, and Diener HA 2002: Observation of Phytophthora spp. in water recirculation system in commercial hardy ornamental nursery stock. Eur. J. Plant Pathology, 108, 337-343.
19. Utagawa S, Tsubaki K, Horie Y, Miuya H, Minoura K, Yamazaki M, Yokoyama T, and Watanabe S 1978: Aquatic fungi. In An Illustrated Book of Fungi (lst vol). Eds., Koudansha Scientific, pp. 46-51, Koudansha, Tokyo.
20. van Hannen EJ, van Agterveld MP, Gons HJ, and Laanbroek HJ 1998: Revealing genetic diversity of eukaryotic microorganism in aquatic environments by denaturing gradient gel electrophoresis. J. Phycol., 34, 206-213.
21. Watanabe T 1993: Comment on soil fungi. In Photomicrographs and Illustrations of Soil Fungi. pp. 1-9, Soft Science, Tokyo.
22. Yang CH and Crowley DE 2000: Rhizosphere microbial community structure in relation to root location and plant iron nutritional status. Appl. Environ. Microbial., 66, 345-351.
23. Zwall KB, Kuikman PJ, and van Veen JA 1994: Rhizosphere protozoa: Their significance in nutrient dynamics. In Soil Protozoa. Ed., Darbyshire JF, pp. 93-121, Cab International, Aberdeen, United Kingdom.