Small GTP-binding protein gene is associated with QTL for submergence tolerance in rice

Russian Journal of Plant Physiology

Volumn 51, Issue 5, 2004, Pages 648-657

  Ruanjaichon, V ^a   Sangsrakru, D ^a   Kamolsukyunyong, W ^a   Siangliw, M ^a   Toojinda, T ^a   Tragoonrung, S ^a   Vanavichit, A ^a  

^a KASETSART UNIVERSITY   (Thailand)

Author keywords

Oryza sativa; Ras related GTP binding protein; single strand conformation polymorphism; submergence stress

Indexed keywords

EMBRYOPHYTA; MAMMALIA; ORYZA SATIVA;

EID: 4544248652     PISSN: 10214437     EISSN: None     Source Type: Journal    
DOI: 10.1023/B:RUPP.0000040752.99730.cd     Document Type: Article

References (50)

1. Jackson, M.B., Waters, I., Setter, T., and Greenway, H., Injury to Rice Plants Caused by Complete Submergence: A Contribution by Ethylene (Ethene), J. Exp. Bot., 1987, vol. 38, pp. 1826-1838.
2. Timothy, L.S. and Eufrocino, V.L., The Beneficial Effect of Reduced Elongation Growth on Submergence Tolerance of Rice, J. Exp. Bot., 1996, vol. 47, pp. 1551-1559.
3. Ito, O., Ella, E., and Kawano, N., Physiological Basis of Submergence Tolerance in Rainfed Lowland Rice Ecosystem, Field Crops Res., 1999, vol. 64, pp. 75-90.
4. Toojinda, T., Siangliw, M., Tragoonrung, S., and Vanavichit, A., Molecular Genetics of Submergence Tolerance in Rice: Quantitative Traits Loci (QTLs) Analysis of Traits Associated with Submergence Tolerance, Ann. Bot. (London), 2003, vol. 91, pp. 243-253.
5. chr9 Is Submergence Tolerant, Ann. Bot. (London), 2003, vol. 91, pp. 255-261.
6. Sano, H. and Youssefinan, S., A Novel Ras-Related RGP1 Encoding a GTP Binding Protein Has Reduced Expression in 5′-Azacytidine-Induce Dwarf Rice, Mol. Gen. Genet., 1991, vol. 228, pp. 227-232.
7. Barbacid, M., Ras Genes, Annu. Rev. Biochem., 1987, vol. 56, pp. 779-827.
8. Warne, P.H., Viciana, P.R., and Downward, J., Direct Interaction of Ras and the Amino-Terminal Region of RAF-1 In Vitro, Nature, 1993, vol. 364, pp. 352-355.
9. Balch, W.E., Small GTP-Binding Proteins in Vesicular Transport, Trends Biochem. Sci., 1990, vol. 15, pp. 473-477.
10. Kameda, I., Yamauchi, S., Youssefian, S., and Sano, H., Transgenic Tobacco Plant Expressing RGP1, a Gene Encoding a Ras-Related GTP-Binding Protein from Rice, Shows Distinct Morphological Characteristics, Plant J., 1992, vol. 2, pp. 799-807.
11. Sano, H., Seo, S., Orudgev, E., Youssefian, S., Ishizuka, K., and Ohashi, V., Expression of the Gene for a Small GTP-Binding Protein in Transgenic Tobacco Elevates Endogenous Cytokinin Levels: Abnormally Induces Salicylic Acid in Response to Binding, and Increasing Resistance to Tobacco Mosaic Virus Infection, Proc. Natl. Acad. Sci. USA, 1994, vol. 91, pp. 10556-10560.
12. Kisaka, H., Sano, H., and Kameya, T., Characterization of Transgenic Rice Plants That Express RGP1, the Gene for a Small GTP-Binding Protein from Rice, Theor. Appl. Genet., 1998, vol. 97, pp. 810-815.
13. Sano, H. and Ohashi, Y., Involvement of Small GTP-Binding Proteins in Defense Signal-Transduction Pathways of Higher Plants, Proc. Natl. Acad. Sci. USA, 1995, vol. 92, pp. 4138-4144.
14. Azuma, T., Mihara, F., Uchida, N., Yasuda, T., and Yamaguchi, T., Plant Hormone Regulation of Internode Elongation of Floating Rice Stem Sections, Japan J. Trop. Agric., 1990, vol. 34, pp. 271-275.
15. Novikova, G.V., Moshkov, I.E., Smith, A.R., and Hall, M.A., The Effect of Ethylene on GTP Binding Protein in Extracts from Pea Epicotyls, Planta, 1997, vol. 201, pp. 1-8.
16. He, C.-J., Morgan, P.W., and Drew, M.C., Transduction of the Ethylene Signal Is Required for Cell Death and Lysis in the Root Cortex of Maize during Aerenchyma Formation Induced by Hypoxia, Plant Physiol., 1996, vol. 112, pp. 463-472.
17. Hayashi, K., PCR-SSCP: A Simple and Sensitive Method for Detection of Mutation in the Genomic DNA, PCR Meth. Appl., 1991, vol. 1, pp. 34-38.
18. Fukuoka, S., Inoue, T., Miyao, A., Zhong, H.S., Ssaki, T., and Minobe, Y., Mapping Sequence-Tagged Sites in Rice by Single Strand Conformation Polymorphisms, DNA Res., 1994, vol. 1, pp. 271-274.
19. Roger, S.O. and Bendich, A.J., Extraction of Total Cellular DNA from Plants, Algae and Fungi, Plant Molecular Biology Manual, Gelvin, S.B. and Schilperoot, R.A., Eds., Dordrecht: Kluwer, 1994, pp. 1-8.
20. Burge, C. and Karlin, S., Prediction of Complete Gene Structures in Human Genomic DNA, J. Mol. Biol., 1997, vol. 268, pp. 78-94.
21. Lukaskin, A.V. and Borodovsky, M., GeneMarkhmm: New Solutions for Gene Finding, Nucleic Acids Res., 1998, vol. 26, pp. 1107-1115.
22. Uberbacher, E.C. and Mural, R.J., Locating Protein-Coding Regions in Human DNA Sequences by a Multiple Sensor-Neural Network Approach, Proc. Natl. Acad. Sci. USA, 1991, vol. 88, pp. 11261-11265.
23. Altschul, S.F., Madden, T.L., Axhaffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J., Gapped BLAST and PSI-BLAST: A New Generation of Protein Database Search Programs, Nucleic Acids Res., 1997, vol. 25, pp. 3389-3402.
24. Lowe, T.M. and Eddy, S.R., tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence, Nucleic Acids Res., 1997, vol. 25, pp. 955-964.
25. Hofmann, K., Bucher, P., Falquet, L., and Bairoch, A., The PROSITE Database, Its Status in 1999, Nucleic Acids Res., 1999, vol. 27, pp. 215-219.
26. Henikoff, J.G., Henikoff, S., and Pietrokovski, S., New Features of the Blocks Database Servers, Nucleic Acids Res., 1999, vol. 27, pp. 226-228.
27. Corpet, F., Gouzy, J., and Kahn, D., Recent Improvements of the ProDom Database of Protein Domain Families, Nucleic Acids Res., 1999, vol. 27, pp. 263-267.
28. Attwood, T.K., Flower, D.R., Lewis, A.P., Mabey, J.E., Morgan, S.R., Scordis, P., Selley, J., and Wright, W., PRINTS Prepares for the New Millennium, Nucleic Acids Res., 1999, vol. 27, pp. 220-225.
29. Bateman, A., Birney, E., Durbin, R., Eddy, S.R., Finn, R.D., and Sonnhammer, E.L., Pfam 3.1: 1313 Multiple Alignments Match the Majority of Proteins, Nucleic Acids Res., 1999, vol. 27, pp. 260-262.
30. Altschul, S.F., Gish, W., Miller, W., Myers, E.W., and Lipman, D.J., Basic Local Alignment Search Tool, J. Mol. Biol., 1990, vol. 215, pp. 403-410.
31. Higo, K., Ugawa, Y., Iwamoto, M., and Korenaga, T., Plant cis-Acting Regulatory DNA Elements (PLACE) Database, Nucleic Acids Res., 1999, vol. 27, pp. 297-300.
32. Higgins, D.G., Bleasby, A.J., and Fuchs, R., CLUSTAL V: Improved Software for Multiple Sequence Alignment, CABIOS, 1992, vol. 8, pp. 189-191.
33. Anai, T., Hasegawa, K., Watanabe, Y., Uchimiya, H., Ishizaki, R., and Matsui, M., Isolation and Analysis of cDNAs Encoding Small GTP-Binding Proteins of Arabidopsis thaliana, Gene, 1991, vol. 108, pp. 259-264.
34. Palme, K., Diefenthal, T., Vingron, M., Sander, C., and Schell, J., Molecular Cloning and Structural Analysis of Gene from Zea mays (L.) Coding for Members of the Ras-Related ypt Gene Family, Proc. Natl. Acad. Sci. USA, 1992, vol. 89, pp. 787-791.
35. Yang, Z. and Watson, J.C., Molecular Cloning and Characterization of a Rho, a Ras-Related Small GTP-Binding Protein from the Garden Pea, Proc. Natl. Acad. Sci. USA, 1993, vol. 90, pp. 8732-8736.
36. Youssefain, S., Nakamura, M., and Sano, H., Molecular Characterization of rgp2, a Gene Encoding a Small GTP-Binding Protein from Rice, Mol. Gen. Genet., 1993, vol. 237, pp. 187-192.
37. Merkle, J., Haizel, T., Mutsumoto, T., Harter, K., Dallmann, G., and Nagy, F., Phenotype of the Fusion Yeast Cell Cycle Regulator Mutant Pimi-46 Is Suppressed by a Tobacco cDNA Encoding a Small, Ras-Like GTP-Binding Protein, Plant J., 1994, vol. 6, pp. 555-565.
38. Sano, H. and Ohashi, Y., Involvement of Small GTP-Binding Proteins in Defense Signal-Transduction Pathways of Higher Plants, Proc. Natl. Acad. Sci. USA, 1995, vol. 92, pp. 4138-4144.
39. Dombrowski, J.E. and Raikhel, N.V., Isolation of a cDNA Encoding a Small GTP-Binding Protein of Arabidopsis thaliana, Plant Mol. Biol., 1995, vol. 28, pp. 1121-1126.
40. Nagano, Y., Murai, N., Matsuno, R., and Sasaki, Y., Isolation and Characterization of cDNAs That Encode Eleven Small GTP-Binding Proteins from Pisum sativum, Plant Cell Physiol., 1993, vol. 34, pp. 447-455.
41. Schiene, K., Puhler, A., and Niehaus, K., Transgenic Tobacco Plants That Express an Antisense Construct Derived from a Medicago sativa cDNA Encoding a Rac-Related Small GTP-Binding Protein Fail to Develop Necrotic Lesions upon Elicitor Infiltration, Mol. Gen. Genet., 2000, vol. 263, pp. 761-770.
42. Haizel, T., Merkle, T., Turck, F., and Nagy, F., Characterization of Membrane-Bound Small GTP-Binding Proteins from Nicotiana tabacum, Plant Physiol., 1995, vol. 108, pp. 59-67.
43. Borg, S., Brandstrup, B., Jensen, T.J., and Poulsen, C., Identification of New Protein Species among 33 Different Small GTP-Binding Proteins Encoded by cDNAs from Lotus japonicus, and Expression of Corresponding mRNAs in Developing Root Nodules, Plant J., 1997, vol. 11, pp. 237-250.
44. Bourne, H.R., Wrischnik, L., and Kenyon, C., Ras Proteins: Some Signal Developments, Nature, 1990, vol. 348, pp. 678-679.
45. Geyer, M. and Wittinghofer, A., GEFs, GAPs, GDIs and Effectors: Taking a Closer (3D) Look at the Regulation of Ras-Related GTP-Binding Proteins, Curr. Opin. Struct. Biol., 1997, vol. 7, pp. 786-792.
46. Weining, S. and Henry, R.J., Molecular Analysis Polymorphism of Wild Barley (Hordeum spontaneum) Using the Polymerase Chain Reaction, Genet. Resources Crop Evol., 1995, vol. 41, pp. 273-281.
47. O'She-Greenfield, A. and Smale, S.T., Role of TATA and Initiator Elements in Determining the Start Site Location and Direction of RNA Polymerase II Transcription, J. Biol. Chem., 1992, vol. 267, pp. 1391-1402.
48. Ono, A., Izawa, T., Chua, N.H., and Shimamoto, K., The Rab16B Promoter of Rice Contains Two Distinct Abscisic Acid-Responsive Elements, Plant Physiol., 1996, vol. 112, pp. 483-491.
49. Hsieh, H.M. and Huang, P.C., Promoter Structure and Activity of Type 1 Rice Metallothionein-Like Gene Source DNA Sequence, J. DNA Sequenc. Map., 1998, vol. 9, pp. 9-17.
50. Mistsunaga, S., Rodriguez, R., and Yamaguchi, J., Sequence-Specific Interactions of a Nuclear Protein Factor with the Promoter Region of a Rice Gene for Alpha-Amylase, RAmy3D, Nucleic Acids Res., 1994, vol. 22, pp. 1948-1953.