ARMEDA II: Supporting genomic medicine through the integration of medical and genetic databases

Proceedings - Fourth IEEE Symposium on Bioinformatics and Bioengineering, BIBE 2004

Volumn , Issue , 2004, Pages 227-234

  Garcia Remesal M ^a   Maojo, V ^a   Billhardt, H ^b   Crespo, J ^a   Alonso Calvo, R ^a   Perez Rey D ^a   Martin, F ^c   Sousa, A ^d  

^a UNIVERSIDAD POLITÉCNICA DE MADRID   (Spain)

^b UNIVERSIDAD REY JUAN CARLOS   (Spain)

^c INSTITUTO DE SALUD CARLOS III   (Spain)

^d UNIVERSITY OF AVEIRO   (Portugal)

Author keywords

ARMEDA II; Bioinformatics; Biomedical Informatics; Genomic Medicine; Heterogeneous Database Integration; INFOGENMED; Medical Informatics

Indexed keywords

BIOMEDICAL ENGINEERING; DATA ACQUISITION; DATABASE SYSTEMS; GENETIC ENGINEERING; HEALTH CARE; INTEGRATION; KNOWLEDGE BASED SYSTEMS; MAPPING; MEDICAL APPLICATIONS; METADATA; VIRTUAL REALITY;

ARMEDA II; BIOINFORMATICS; BIOMEDICAL INFORMATICS; GENOMIC MEDICINE; HETEROGENEOUS DATABASE INTEGRATION; INFOGENMED; MEDICAL INFORMATICS;

BIOTECHNOLOGY;

EID: 4544241057     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (42)

1. I. Fernández, V. Maojo, J. Crespo, S. Álamo, J. Sanandrés, and F. Martín: "Armeda: Accessing remote medical databases over the World Wide Web". Proceedings of the 13th Medical Informatics Europe. Conference MIE 97. Porto Carras, Greece, 1997.
2. W. Sujansky: "Heterogeneous Database Integration in Biomedicine". Journal of Biomedical Informatics Vol. 34, No. 4, pp. 285-298 (2001).
3. S.B. Davidson, J. Crabtree, B. Brunk, J. Schug, V. Tannen, C. Overton, and C. Stoeckert: "K2/Kleisli and GUS: Experiments in integrated access to genomic data sources". IBM Systems Journal, Vol. 40, No. 2, pp. 512-531 (2001).
4. G. Wiederhold: "Mediators in the Architecture of Future Information Systems". IEEE Computer, Vol. 25, No. 3, pp. 38-49 (1992).
5. S. Chawathe, H. Garcia-Molina, J. Hammer, K. Ireland, Y. Papakonstautinou, J. Ullman, and J. Widom: "The TSIMMIS Project: Integration of Heterogeneous Information Sources". Proceedings of IPSJ Conference, pp. 7-18, Tokyo, Japan, October 1994.
6. th International Conference on Distributed Computer Systems, Hong Kong, 1996.
7. th International Conference on Information and Knowledge Management, ACM, New York (1995).
8. S. Adali, K. Candan, Y. Papakonstantinou: "Query caching and optimization in distributed mediator systems". Proceedings of the ACM SIGMOID International Conference on Management of Data. Montreal, Canada, June 1996, ACM, New York (1996), pp. 137-148.
9. S.B. Davidson, C. Overton, V. Tannen, L. Wong: "BioKleisli: A digital library for biomedical researchers". International Journal on Digital Libraries, Vol. 1. No. 1, pp. 36-53, (1997).
10. Y. Arens, C.Y. Chee, C.N. Hsu, C.A. Knoblock: "Retrieving and integrating data from multiple information sources". International Journal of Intelligent and Cooperative Information Systems, No. 2, Vol. 2, pp. 127-158 (1993).
11. Y. Arens, C.N. Hsu, C.A. Knoblock: "Query processing in the SIMS information mediator". In M.N. Huns and M.P. Singh (eds.), Readings in Agents. Morgan Kauffmann, San Francisco, CA, 1998.
12. C.A. Knoblock, S. Minton, J.L. Ambite, N. Ashish, I. Muslea, A.G. Philpot, and S. Tejada: "The Ariadne Apprach to Web-based Information Integration". International Journal of Cooperative Information Systems, Vol. 10, Nos. 1 & 2, pp. 145-169 (2001).
13. R.M. MacGregor: "Inside the LOOM Description Classifier". SIGART Bulletin Vol. 2, No. 3, pp. 88-97. (1991).
14. M.C. Shan, R. Ahmed, J. Davis, W. Du, W. Kent: "Pegasus: a heterogeneous information management system". W. Kim (Ed.), Modern Database Systems, Chapter 32, ACM Press (Addison-Wesley Publishing Co.). Reading, MA (1994).
15. th International Workshop on Research Issues in Data Engineering. Taipei, Taiwan, March 1995, IEEE, New York (1995).
16. L.M. Haas, P.M. Schwarz, P. Kodali, E. Kotlar, I.E. Rice, W.C. Swope: "Discoverylink: a system for integrated access to life sciences data sources". IBM Systems Journal Vol. 40, No. 2, pp. 489-511 (2001).
17. P.O. Baker, A. Brass, S. Bechhofer, C. Goble, N. Paton, R. Stevens, "TAMBIS: Transparent Access to Multiple Bioinformatics Information Sources. An Overview". Proceedings of the Sixth International Conference on Intelligent Systems for Molecular Biology, ISMB98, Montreal, 1998.
18. P.G. Baker, C.A. Goble, S. Bechhofer, N.W. Paton, R. Stevens, A. Brass: "An Ontology for Bioinformatics Applications". Bioinformatics, Vol. 15, No. 6, pp. 510-520 (1999).
19. Z. Ben Miled, N. Li, G. Kellett, B. Sipes, O. Bukhres: "Complex Life Science Multidatabase Queries". Proceedings of the IEEE, Vol. 90, No. 11, November, 2002.
20. st IFCIS International Conference on Cooperative Information Systems. Brussels, 1996.
21. F. Goasdoué, V. Lattes, M. C. Rousset: "The Use of CARIN Language and algorithms for information integration: The PICSEL Project". International Journal of Cooperative Information Systems, Vol. 9, No. 4, pp. 383-401 (2000).
22. C.H. Goh: "Representing and reasoning about semantic conflicts in heterogeneous information sources". PhD Dissertation, Massachusetts Institute of Technology, 1997.
23. H. Wache, T. Scholz, H. Stieghahn, B. König-Ries: "An integration method for the specification of rule-oriented mediators". In Y. Kambayashi and H. Takakura (eds.), Proceedings of the International Symposium on Database Applications in Non-Traditional Environments (EFIS 99), Kühlungsborn, Germany, 1999.
24. H. Stuckenschmidt, F. van Harmelen, D. Fensel, M. Klein, I. Horrocks: "Catalogue Integration: A case study in ontology-based semantic translation". Technical Report IR-474, Computer Science Department, Vrije Universiteit Amsterdam, 2000.
25. F.C. Cheong: "Internet Agents: Spiders, Wanderers, Brokers, and Bots". New Riders Publishing, 1996.
26. "INFOGENMED: A virtual laboratory for accessing and integrating genetic and medical information for health applications". EC Project IST-2001-39013. 2002-04.
27. P. P. Chen: "The entity-relationship model: toward an unified view of data". ACM Transactions on Database Systems. Vol. 1, No. 1, pp. 9-36 (1974).
28. H. Billhardt, J. Crespo, V. Maojo, F. Martin, J.L. Maté: "A New Method for Unifying Heterogeneous Databases". ISMDA 2001: 54-61.
29. Kohane I.S., Kho A.T., Butte A.J.: "Microarrays for an Integrative Genomics". MIT Press, Cambridge. 2003.
30. http://www.nlm.nih.gov/research/visible/visible_human.html
31. Flickner M., Sawhney H., Niblack W., Ashley J., Huang Q., Dom B., Gorkani M., Hafner I., Lee D., Petkovic D. Steele D., Yanker P.: "Query by Image and Video Content: The QBIC System". IEEE Computer, No. 28, Vol. 9, pp. 23-32, 1995.
32. Gupta A., Jain R.: "Visual Information Retrieval". Communications of the ACM, Vol. 40, No. 5, pp. 69-79, 1997.
33. Smeulders A.W.M, Wearing M., Santini S., Gupta A., Jain R.: "Content-based Image Retrieval at the end of the early years". IEEE Transactions on Pattern Analysis and Machine Intelligence. Vol. 22, No. 12, pp. 1349-1380.
34. Eakins J.: "Towards Intelligent Image Retrieval". Pattern Recognition, Vol. 35, No. 1, pp. 13-14, 2002.
35. Baeza-Yates R., Ribeiro-Neto B. (eds.): "Modern Information Retrieval". Addison Wesley, 1999.
36. Witten I.H., Moffat A., Bell T.C.: "Managing Gigabytes: Compressing and Indexing Documents and Images". Second Edition, Morgan Kauffman, San Francisco, 1999.
37. Schreiber A.T., Dubbeldam B., Wielemaker J., Wielinga B.: "Ontology-Based Photo Annotation". IEEE Intelligent Systems, No. 16, Vol. 3, pp.66-74, 2001.
38. Hyvönen E., Styrman A., Saarela S.: "Ontology-Based Image Retrieval". Proceedings of XML Finland 2002 Conference. Towards the semantic web and web services, pp. 15-27, 2002.
39. nd Annuall Colloquium on Information Retrieval Research (IRSG'2000), pp. 105-117, Cambridge, UK, 2000.
40. Billhardt H., Borrajo D., Maojo V.: "A Context Vector Model for Information Retrieval". Journal of the American Society for Information Science and Technology, No. 53, Vol. 3, pp. 236-249, 2002.
41. Hu B., Dasmahapatra S., Lewis P., Shadbolt N.: "Ontology-Based Medical Image Annotation with Description Logics". Proceedings of the Conference on Tools with Artificial Intelligence ICTAI'03, Sacramento, CA, USA, November 2003.
42. Hollink L., Schreiber G., Wielemaker J., Wielinga B.: "Semantic Annotation of Image Collections". Proceedings of the KCAP'03 Workshop on Knowledge Capture and Semantic Annotation, Florida, October 2003.