Phytophthora bisheria sp. nov., a new species identified in isolates from the rosaceous raspberry, rose and strawberry in three continents

Mycologia

Volumn 100, Issue 1, 2008, Pages 99-110

  Abad, Z Gloria ^a   Abad, Jorge A ^a   Coffey, Michael D ^b   Oudemans, Peter V ^c   Man in 't Veld, Willem A ^d   De Gruyter, Hans ^d   Cunnington, James ^e   Louws, Frank J ^f  

^a AGRICULTURAL RESEARCH SERVICE   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c RUTGERS UNIVERSITY   (United States)

^d WAGENINGEN UNIVERSITY   (Netherlands)

^e Department of Primary Industries Knoxfield   (Australia)

^f NORTH CAROLINA STATE UNIVERSITY   (United States)

Author keywords

ITS; Morphology; Oomycetes; Patho genicity; Phylogenetics; Phytophthora; Straminipiles; Taxonomy

Indexed keywords

ANGIOSPERM; FUNGUS; HERB; MORPHOLOGY; NEW SPECIES; ROOT ROT; TAXONOMY;

NORTH AMERICA; NORTH CAROLINA; UNITED STATES;

CYMBIDIUM; FRAGARIA X ANANASSA; OOMYCETES; ORCHIDACEAE; PHYTOPHTHORA; PHYTOPHTHORA BISHERIA; PHYTOPHTHORA BOTRYOSA; PHYTOPHTHORA CAPSICI; PHYTOPHTHORA CITRICOLA; PHYTOPHTHORA CITROPHTHORA; PHYTOPHTHORA COLOCASIAE; PHYTOPHTHORA INFLATA; PHYTOPHTHORA MEADII; PHYTOPHTHORA MULTIVESICULATA; PHYTOPHTHORA SP.; ROSA; RUBUS GLAUCUS;

FUNGAL DNA; RIBOSOMAL SPACER DNA; RIBOSOME DNA;

ARTICLE; AUSTRALIA; CLASSIFICATION; CYTOLOGY; DNA SEQUENCE; FUNGUS SPORE; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; NETHERLANDS; PHYLOGENY; PHYTOPHTHORA; PLANT DISEASE; PLANT ROOT; ROSACEAE; ROSE; STRAWBERRY; UNITED STATES;

AUSTRALIA; DNA, FUNGAL; DNA, RIBOSOMAL; DNA, RIBOSOMAL SPACER; FRAGARIA; MOLECULAR SEQUENCE DATA; NETHERLANDS; PHYLOGENY; PHYTOPHTHORA; PLANT DISEASES; PLANT ROOTS; ROSA; ROSACEAE; SEQUENCE ANALYSIS, DNA; SPORES, FUNGAL; UNITED STATES;

EID: 45149116176     PISSN: 00275514     EISSN: 15572536     Source Type: Journal    
DOI: 10.3852/mycologia.100.1.99     Document Type: Article

References (47)

1. Abad ZG, Abad JA, Louws FJ. 2001. Morphological and molecular characterization of Phytophthora bisheria sp. nov. isolated from strawberries. Phytopathology 91:S1.
2. Amsing JJ. 1995. Gnomonia radicicola and a Phytophthora species as causal agents of root rot on roses in artificial substrates. Acta Horticult 382:203-211.
3. Belbahri L, Moralejo E, Calmin G, Oszako T, García JA, Descals E, Lefort F. 2006. Phytophthora polonica, a new species isolated from declining Alnus glutinosa stands in Poland. FEMS Microbiol Lett 261:165-174.
4. Bowers JH, Martin FN, Tooley PW, Luz EDMN. 2007. Genetic and morphological diversity of temperate and tropical isolates of Phytophthora capsici. Phytopathology 97:492-503.
5. Brasier CM, Sanchez-Hernandez E, Kirk SA. 2003a. Phytophthora inundata sp. nov., a part heterothallic pathogen of trees and shrubs in wet or flooded soils. Mycol Res 107:477-484.
6. - , Cooke DE, Duncan JM, Hansen EM. 2003b. Multiple new phenotypic taxa from trees and riparian ecosystems in Phytophthora gonapodyides-P. megasperma ITS Clade 6, which tend to be high-temperature tolerant and either inbreeding or sterile. Mycol Res 107:277-290.
7. - , Kirk SA, Delcan J, Cooke DEL, Jung T, Man in 't Veld WA. 2004. Phytophthora alni sp. nov. and its variants: designation of emerging heteroploid hybrid pathogens spreading on Alnus trees. Mycol Res 108: 1172-1184.
8. - , Beales PA, Kirk SA, Denman S, Rose J. 2005. Phytophthora kernoviae sp. nov., an invasive pathogen causing bleeding stem lesions on forest trees and foliar necrosis of ornamentals in the UK. Mycol Res 109:853- 859.
9. Chang HS. 1988. Phytophthora species associated with strawberry fruit rot in Taiwan. Botanic Bull Academia Sinica, Taiwan 29:61-67.
10. Cooke DEL, Duncan JM. 1997. Phylogenetic analysis of Phytophthora species based on ITS1 and ITS2 sequences of the ribosomal RNA gene repeat. Mycol Res 101:667- 677.
11. - , Drenth A, Duncan JM, Wagels G, Brasier CM. 2000. A molecular phylogeny of Phytophthora and related Oomycetes. Fungal Genet Biol 30:17-32.
12. de Cock AWAM, Lévesque CA. 2004. New species of Pythium and Phytophthora. Stud Mycol 50:481-487.
13. Dick MW. 2001. Straminipilous fungi: systematics of the Perenosporomycetes including accounts on the marine straminipilous protists, the plasmodiophorids and similar organisms. Dordrecht, the Netherlands: Kluwer Academic Publishers. 670 p.
14. - , Dobbie K, Cooke DEL, Brasier CM. 2006. Phytophthora captiosa sp. nov. and P. fallax sp. nov. causing crown dieback of Eucalyptus in New Zealand. Mycol Res 110:393-404.
15. Diekmann M, Frison EA, Putter T. 1994. Technical guidelines for the safe movement of small fruit germplasm. Rome: Food and Agricultural Organization of the United Nations, Rome/International Plant Genetic Resources Institute. 125 p.
16. Donahoo R, Blomquist CL, Thomas SL, Moulton JK, Cooke DEL, Lamour KH. 2006. Phytophthora foliorum sp. nov., a new species causing leaf blight of azalea. Mycol Res 110:1309-1322.
17. Ellis MA, Converse RH, Williams RN, Williamson B, eds. 1991. Compendium of raspberry and blackberry diseases and insects. St Paul, Minnesota: American Phytopathological Society Press. 100 p.
18. Erwin DC, Ribeiro OK. 1996. Phytophthora diseases worldwide. St Paul, Minnesota: The American Phytopathological Society Press. 562 p.
19. Flier WG, Grunwald NJ, Kroon LPNM, van den Bosch BM, Garay-Serrano E, Lozoya-Saldana H, Bonants PJM, Turkensteen LJ. 2002. Phytophthora ipomoeae sp. nov., a new homothallic species causing leaf blight on Ipomoea longipedunculata in the Toluca Valley of central Mexico. Mycol Res 106:848-856.
20. Gams KW, Hoekstra ES, Aptroot A, eds. 1998. CBS course of mycology. 4th ed. Baarn, the Netherlands: Centraalbureau voor Schimmelcultures.
21. Hansen EM, Reeser PW, Davidson JM, Garbelotto M, Ivors K, Douhan L, Rizzo DM. 2003. Phytophthora nemorosa, a new species causing cankers and leaf blight of forest trees in California and Oregon, USA. Mycotaxon 88:129-138.
22. Ho H-H. 2001. Phytophthora oryzo-bladis, a new name for P. fragariae var. oryzo-bladis. Mycotaxon 78:17-21.
23. Husmeier D, Wright F. 2001. Probabilistic divergence measures for detecting interspecies recombination. Bioinformatics 17 Sppl. 1:S123-S131.
24. Ilieva E. 1995. New Phytophthora species on strawberry. Pochvozhanie-agrokhimiya-y-Ekologiya 30:1-6.
25. -, Man in't Veld WA, Veenbaas-Rijks W, Pieters R. 1998. Phytophthora multivesiculata, a new species causing root rot of Cymbidium. Eur J Plant Path 104: 677-684.
26. Jung T, Cooke DEL, Blaschke H, Duncan JM, Oswald W. 1999. Phytophthora quercina sp. nov., causing root rot of European oaks. Mycol Res 103:785-798.
27. - , Hansen EM, Winton L, Obwald W, Delatour C. 2002. Three new species of Phytophthora from European oak forests. Mycol Res 106:397-411.
28. Kanwischer ME, Michell DJ. 1978. The influence of a fungicide on the epidemiology of black shank of tobacco. Phytopathology 68:1760-1765.
29. Kennedy DM, Duncan JM. 1995. A papillate Phytophthora species with specificity to Rubus. Mycol Res 99:57-68.
30. Kroon LP, Bakker FT, van den Bosch GB, Bonants PJ, Flier WG. 2004. Phylogenetic analysis of Phytophthora species based on mitochondrial and nuclear DNA sequences. Fungal Genet Biol 41:766-782.
31. Man in 't Veld WA, Veenbaas-Rijks WJ, Ilieva E, de Cock AWAM, Bonants PJM, Pieters R. 1998. Natural hybrids of Phytophthora nicotianae and Phytophthora cactorum demonstrated by isozyme analysis and random amplified polymorphic DNA. Phytopathology 88:922-929.
32. - , de Cock AWAM, Ilieva E, Levesque CA. 2002. Gene flow analysis of Phytophthora porri reveals a new species: Phytophthora brassicae sp. nov. Eur J Plant Pathol 108: 51-62.
33. Martin FN, Tooley PW. 2003. Phylogenetic relationships among Phytophthora species inferred from sequence analysis of mitochondrially encoded cytochrome oxidase I and II genes. Mycologia 95:269-284.
34. Mass JL. 1998. Compendium of strawberry diseases. 2nd ed. St Paul, Minnesota: American Phytopathological Society Press. 98 p.
35. Matsuzaki M, Kan M, Kiso A. 1980. Phytophthora root rot of strawberry in Kyushu, Japan. Ann Phytopathol Soc Japan 46:179-184.
36. Milne I, Wright F, Rowe G, Marshal DF, Husmeier D, McGuire G. 2004. TOPALi: software for automatic identification of recombinant sequences within DNA multiple alignments. Bioinformatics 20:1806-1807.
37. Mirabolfathy M, Cooke DEL, Duncan JM, Williams NA, Ershad D, Alizadeh A. 2001. Phytophthora pistaciae sp. nov. and P. melonis: the principal causes of pistachio gummosis in Iran. Mycol Res 105:1166-1175.
38. Oudemans P, Coffey MD. 1991. A revised systematics of twelve papillate Phytophthora species based on isozyme analysis. Mycol Res 95:1025-1046.
39. Page RDM. 1996. TREEVIEW: an application to display phylogenetic trees on personal computers. Comp Appl Biosci 12:357-358.
40. Shew HD, Abad ZG, Olivera G, Abad JA. 1999. Morphological and molecular characterization of Phytophthora glovera sp. nov. from tobacco. Phytopathology 89: S72.
41. Stamps DJ, Waterhouse GM, Newhook FJ, Hall GS. 1990. Revised tabular key to the species of Phytophthora. Mycol Pap 162, 28 p.
42. Tsao PH, Guy SO. 1977. Inhibition of Mortieriella and Pythium in a Phytophthora isolation medium containing hymexazol. Phytopathology 67:796-801.
43. Washington B. 1999. Raspberry root rots in Victoria. Agriculture Notes AG0163. Victoria, Australia: Victorian Department of Primary Industries. 2 p.
44. Waterhouse GM. 1963. Key to the species of Phytophthora de Bary. Mycol Pap 92.
45. Werres S, Marwitz R, Man in 't Veld WA, de Cock AWAM, Bonants PJM, de Weerdt M, Themann K, Ilieva E, Baayen RP. 2001. Phytophthora ramorum sp. nov., a new pathogen on Rhododendron and Viburnum. Mycol Res 105:1155-1165.
46. White TJ, Bruns T, Lee SB, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR protocols: a guide to methods and applications. San Diego: Academic Press. p 315-322.
47. Winterbottom C, Westerlund F, Mircetich J, Galper L, Welch N. 1996. Evaluation of relative resistance of different strawberry cultivars to Phytophthora and Verticillium dahliae as a potential alternative to methyl bromide. In: Annual International Res Conference on methyl bromide alternatives and emissions reductions. Orlando, Florida. http://mbao.org/ 1997airc/033winterbottom.pdf