A framework for querying pedigree data

Proceedings of the International Conference on Scientific and Statistical Database Management, SSDBM

Volumn , Issue , 2006, Pages 71-80

  Elliott, B ^a   Akgul, S F ^a   Ozsoyoglu, Z M ^a   Manilich, E ^a  

^a CASE WESTERN RESERVE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEX QUERIES; DATABASE MANAGEMENT; EVALUATION FRAMEWORK; EXPERIMENTAL RESULTS; GENERAL (CO); INTERNATIONAL CONFERENCES; KEY PARTS; PEDIGREE DATA; PERFORMANCE IMPROVEMENTS; REAL DATA; RELATIONAL DATABASES; RISK FACTORS; SEMI-STRUCTURED DATA;

ADMINISTRATIVE DATA PROCESSING; DATABASE SYSTEMS; LINGUISTICS; MANAGEMENT; MANAGEMENT INFORMATION SYSTEMS; MARKUP LANGUAGES; STATISTICAL METHODS; STATISTICS;

QUERY LANGUAGES;

EID: 45149099657     PISSN: 10993371     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/SSDBM.2006.8     Document Type: Conference Paper

References (21)

1. R. Agarwala, L.G. Biesecker, K.A. Hopkins, C.A. Francomano, and A.A. Schärfer. Software for Constructing and Verifying Pedigrees Within Large Genealogies and an Application to the Old Order Amish of Lancaster County. Genome Research, 98(8):211-221, 1998.
2. S.F. Akgul, B. Elliott, and Z.M. Ozsoyoglu. Insert-friendly XML Labeling System for Efficient Query Processing. CWRU Technical Report, 2005.
3. T. Bozkaya, N. Balkir, T. Lee. Efficient Evaluation of Path Algebra Expressions. CWRU Technical Report, 1997.
4. J.M. Church. A scoring system for the strength of a family history of colorectal cancer. Dis Colon Rectum, 48(5):889-896, 2005.
5. http://colorectal.ccf.org
6. Cyrillic Software, http://www.cyrillicsoftware.com/
7. S. M. Dintelman, and A.T. Maness. An implementation of a query language supporting path expressions. In Proceedings of the 1982 ACM SIGMOD international Conference on Management of Data, 87-93, June 2002.
8. B. Elliott, S.F. Akgul, Z.M. Ozsoyoglu, E. Manilich. Modeling and Querying Pedigree Data. CWRU Technical Report, 2006.
9. J.R.Garbe, and Y. Da. Pedigraph 2.0, a software tool for the graphing and analysis of large complex pedigrees. Abstract book, ADSA-ASAS-PSA Joint Annual Meeting, 04:25-29, 2004. http://animalgene.umn.edu/pedigraph.html
10. H.T.Lynch, A.D.L. Chapelle. Hereditary Colorectal Cancer. N Engl J Med, 348: 919-932, 2003.
11. Pedigree and Population Resource: Utah Population Database, http://www.hci.utah.edu/groups/ppr/
12. Progeny Software, http://www.progeny2000.com/
13. S. Abiteboul, P. Buneman, D. Suciu. Data on the Web: From Relations to Semistructured Data and XML. Morgan Kaufmann, 1999.
14. L. Sheng, Z.M. Ozsoyoglu, and G. Ozsoyoglu. A Graph Query Language and Its Query Processing. Proceedings of 1999 ICDE Conference, 1999.
15. T. Kameda. On the vector representation of the reachability in planar directed graphs. Information Processing Letters, 3(3), January 1975.
16. Technical report/formal language specification website.
17. R.V. Berloo, and R.C.B. Hutten. Peditree: Pedigree Database Analysis and Visualization for Breeding and Science. Journal of Heredity 96 (2005): 465-468.
18. E.A. Wernert, and J. Lakshmipathy. PViN: a scalable and flexible system for visualizing pedigree databases. In Proceedings of the 2005 ACM Symposium on Applied Computing, 05:115-122, 2005.
19. A. Yount. The Use of Relational Database Commands in Retrieval of Pedigree Information. Journal of Medical Systems, 87(11):Nos. 2/3, 1987.
20. XPath Language specification http://www.w3.org/TR/xpath
21. Glosary of Genetic Terms, National Human Genome Research Institute http://www.genome.gov/glossary.cfm?key=pedigree