-
1
-
-
29144509665
-
Drosophila microRNAs exhibit diverse spatial expression patterns during embryonic development
-
Aboobaker A.A., Tomancak P., Patel N., Rubin G.M., and Lai E.C. Drosophila microRNAs exhibit diverse spatial expression patterns during embryonic development. Proc. Natl. Acad. Sci. USA 102 (2005) 18017-18022
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 18017-18022
-
-
Aboobaker, A.A.1
Tomancak, P.2
Patel, N.3
Rubin, G.M.4
Lai, E.C.5
-
2
-
-
12744261466
-
Computational prediction of miRNAs in Arabidopsis thaliana
-
Adai A., Johnson C., Mlotshwa S., Archer-Evans S., Manocha V., Vance V., and Sundaresan V. Computational prediction of miRNAs in Arabidopsis thaliana. Genome Res. 15 (2005) 78-91
-
(2005)
Genome Res.
, vol.15
, pp. 78-91
-
-
Adai, A.1
Johnson, C.2
Mlotshwa, S.3
Archer-Evans, S.4
Manocha, V.5
Vance, V.6
Sundaresan, V.7
-
3
-
-
0037370020
-
A uniform system for microRNA annotation
-
Ambros V., Bartel B., Bartel D.P., Burge C.B., Carrington J.C., Chen X., Dreyfuss G., Eddy S.R., Griffiths-Jones S., Marshall M., Matzke M., Ruvkun G., and Tuschl T. A uniform system for microRNA annotation. RNA 9 (2003) 277-279
-
(2003)
RNA
, vol.9
, pp. 277-279
-
-
Ambros, V.1
Bartel, B.2
Bartel, D.P.3
Burge, C.B.4
Carrington, J.C.5
Chen, X.6
Dreyfuss, G.7
Eddy, S.R.8
Griffiths-Jones, S.9
Marshall, M.10
Matzke, M.11
Ruvkun, G.12
Tuschl, T.13
-
4
-
-
0041941514
-
The small RNA profile during Drosophila melanogaster development
-
Aravin A.A., Lagos-Quintana M., Yalcin A., Zavolan M., Marks D., Snyder B., Gaasterland T., Meyer J., and Tuschl T. The small RNA profile during Drosophila melanogaster development. Dev. Cell 5 (2003) 337-350
-
(2003)
Dev. Cell
, vol.5
, pp. 337-350
-
-
Aravin, A.A.1
Lagos-Quintana, M.2
Yalcin, A.3
Zavolan, M.4
Marks, D.5
Snyder, B.6
Gaasterland, T.7
Meyer, J.8
Tuschl, T.9
-
5
-
-
0347444723
-
MicroRNAs: Genomics, biogenesis, mechanism, and function
-
Bartel D.P. MicroRNAs: Genomics, biogenesis, mechanism, and function. Cell 116 (2004) 281-297
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
6
-
-
33845452609
-
Insect microRNAs: Structure, function and evolution
-
Behura S.K. Insect microRNAs: Structure, function and evolution. Insect Biochem. Mol. Biol. 37 (2007) 3-9
-
(2007)
Insect Biochem. Mol. Biol.
, vol.37
, pp. 3-9
-
-
Behura, S.K.1
-
7
-
-
22844440427
-
Identification of hundreds of conserved and nonconserved human microRNAs
-
Bentwich I., Avniel A., Karov Y., Aharonov R., Gilad S., Barad O., Barzilai A., Einat P., Einav U., Meiri E., Sharon E., Spector Y., and Bentwich Z. Identification of hundreds of conserved and nonconserved human microRNAs. Nat. Genet. 37 (2005) 766-770
-
(2005)
Nat. Genet.
, vol.37
, pp. 766-770
-
-
Bentwich, I.1
Avniel, A.2
Karov, Y.3
Aharonov, R.4
Gilad, S.5
Barad, O.6
Barzilai, A.7
Einat, P.8
Einav, U.9
Meiri, E.10
Sharon, E.11
Spector, Y.12
Bentwich, Z.13
-
8
-
-
11844262661
-
Phylogenetic shadowing and computational identification of human microRNA genes
-
Berezikov E., Guryev V., van de Belt J., Wienholds E., Plasterk R.H., and Cuppen E. Phylogenetic shadowing and computational identification of human microRNA genes. Cell 120 (2005) 21-24
-
(2005)
Cell
, vol.120
, pp. 21-24
-
-
Berezikov, E.1
Guryev, V.2
van de Belt, J.3
Wienholds, E.4
Plasterk, R.H.5
Cuppen, E.6
-
10
-
-
0345064195
-
Developmental defects by antisense-mediated inactivation of micro-RNAs 2 and 13 in Drosophila and the identification of putative target genes
-
Boutla A., Delidakis C., and Tabler M. Developmental defects by antisense-mediated inactivation of micro-RNAs 2 and 13 in Drosophila and the identification of putative target genes. Nucleic Acids Res. 31 (2003) 4973-4980
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 4973-4980
-
-
Boutla, A.1
Delidakis, C.2
Tabler, M.3
-
12
-
-
31744432337
-
The role of microRNA-1 and microRNA-133 in skeletal muscle proliferation and differentiation
-
Chen J.F., Mandel E.M., Thomson J.M., Wu Q., Callis T.E., Hammond S.M., Conlon F.L., and Wang D.Z. The role of microRNA-1 and microRNA-133 in skeletal muscle proliferation and differentiation. Nat. Genet. 38 (2006) 228-233
-
(2006)
Nat. Genet.
, vol.38
, pp. 228-233
-
-
Chen, J.F.1
Mandel, E.M.2
Thomson, J.M.3
Wu, Q.4
Callis, T.E.5
Hammond, S.M.6
Conlon, F.L.7
Wang, D.Z.8
-
13
-
-
0027330888
-
Using RNAFOLD to predict the activity of small catalytic RNAs
-
Denman R.B. Using RNAFOLD to predict the activity of small catalytic RNAs. Biotechniques 15 (1993) 1090-1095
-
(1993)
Biotechniques
, vol.15
, pp. 1090-1095
-
-
Denman, R.B.1
-
14
-
-
0038054470
-
Computational and experimental identification of C. elegans microRNAs
-
Grad Y., Aach J., Hayes G.D., Reinhart B.J., Church G.M., Ruvkun G., and Kim J. Computational and experimental identification of C. elegans microRNAs. Mol. Cell 11 (2003) 1253-1263
-
(2003)
Mol. Cell
, vol.11
, pp. 1253-1263
-
-
Grad, Y.1
Aach, J.2
Hayes, G.D.3
Reinhart, B.J.4
Church, G.M.5
Ruvkun, G.6
Kim, J.7
-
16
-
-
33644750115
-
miRBase: microRNA sequences, targets and gene nomenclature
-
Griffiths-Jones S., Grocock R.J., van Dongen S., Bateman A., and Enright A.J. miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 34 (2006) D140-D144
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Griffiths-Jones, S.1
Grocock, R.J.2
van Dongen, S.3
Bateman, A.4
Enright, A.J.5
-
17
-
-
19944431653
-
Transcriptome analysis for the chicken based on 19,626 finished cDNA sequences and 485,337 expressed sequence tags
-
Hubbard S.J., Grafham D.V., Beattie K.J., Overton I.M., McLaren S.R., Croning M.D., Boardman P.E., Bonfield J.K., Burnside J., Davies R.M., Farrell E.R., Francis M.D., Griffiths-Jones S., Humphray S.J., Hyland C., Scott C.E., Tang H., Taylor R.G., Tickle C., Brown W.R., Birney E., Rogers J., and Wilson S.A. Transcriptome analysis for the chicken based on 19,626 finished cDNA sequences and 485,337 expressed sequence tags. Genome Res. 15 (2005) 174-183
-
(2005)
Genome Res.
, vol.15
, pp. 174-183
-
-
Hubbard, S.J.1
Grafham, D.V.2
Beattie, K.J.3
Overton, I.M.4
McLaren, S.R.5
Croning, M.D.6
Boardman, P.E.7
Bonfield, J.K.8
Burnside, J.9
Davies, R.M.10
Farrell, E.R.11
Francis, M.D.12
Griffiths-Jones, S.13
Humphray, S.J.14
Hyland, C.15
Scott, C.E.16
Tang, H.17
Taylor, R.G.18
Tickle, C.19
Brown, W.R.20
Birney, E.21
Rogers, J.22
Wilson, S.A.23
more..
-
18
-
-
0037238008
-
Mind bomb is a ubiquitin ligase that is essential for efficient activation of Notch signaling by Delta
-
Itoh M., Kim C.H., Palardy G., Oda T., Jiang Y.J., Maust D., Yeo S.Y., Lorick K., Wright G.J., Ariza-McNaughton L., Weissman A.M., Lewis J., Chandrasekharappa S.C., and Chitnis A.B. Mind bomb is a ubiquitin ligase that is essential for efficient activation of Notch signaling by Delta. Dev. Cell 4 (2003) 67-82
-
(2003)
Dev. Cell
, vol.4
, pp. 67-82
-
-
Itoh, M.1
Kim, C.H.2
Palardy, G.3
Oda, T.4
Jiang, Y.J.5
Maust, D.6
Yeo, S.Y.7
Lorick, K.8
Wright, G.J.9
Ariza-McNaughton, L.10
Weissman, A.M.11
Lewis, J.12
Chandrasekharappa, S.C.13
Chitnis, A.B.14
-
19
-
-
33344477448
-
Genomics of microRNA
-
Kim V.N., and Nam J.W. Genomics of microRNA. Trends Genet. 22 (2006) 165-173
-
(2006)
Trends Genet.
, vol.22
, pp. 165-173
-
-
Kim, V.N.1
Nam, J.W.2
-
20
-
-
33846945735
-
Processing of intronic microRNAs
-
Kim Y.K., and Kim V.N. Processing of intronic microRNAs. EMBO J. 26 (2007) 775-783
-
(2007)
EMBO J.
, vol.26
, pp. 775-783
-
-
Kim, Y.K.1
Kim, V.N.2
-
21
-
-
30044437240
-
MicroRNA1 influences cardiac differentiation in Drosophila and regulates Notch signaling
-
Kwon C., Han Z., Olson E.N., and Srivastava D. MicroRNA1 influences cardiac differentiation in Drosophila and regulates Notch signaling. Proc. Natl. Acad. Sci. USA 102 (2005) 18986-18991
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 18986-18991
-
-
Kwon, C.1
Han, Z.2
Olson, E.N.3
Srivastava, D.4
-
22
-
-
0035955374
-
Identification of novel genes coding for small expressed RNAs
-
Lagos-Quintana M., Rauhut R., Lendeckel W., and Tuschl T. Identification of novel genes coding for small expressed RNAs. Science 294 (2001) 853-858
-
(2001)
Science
, vol.294
, pp. 853-858
-
-
Lagos-Quintana, M.1
Rauhut, R.2
Lendeckel, W.3
Tuschl, T.4
-
24
-
-
0035955361
-
An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
-
Lau N.C., Lim L.P., Weinstein E.G., and Bartel D.P. An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans. Science 294 (2001) 858-862
-
(2001)
Science
, vol.294
, pp. 858-862
-
-
Lau, N.C.1
Lim, L.P.2
Weinstein, E.G.3
Bartel, D.P.4
-
25
-
-
0035955366
-
An extensive class of small RNAs in Caenorhabditis elegans
-
Lee R.C., and Ambros V. An extensive class of small RNAs in Caenorhabditis elegans. Science 294 (2001) 862-864
-
(2001)
Science
, vol.294
, pp. 862-864
-
-
Lee, R.C.1
Ambros, V.2
-
26
-
-
8144225486
-
MicroRNA genes are transcribed by RNA polymerase II
-
Lee Y., Kim M., Han J., Yeom K.H., Lee S., Baek S.H., and Kim V.N. MicroRNA genes are transcribed by RNA polymerase II. EMBO J. 23 (2004) 4051-4060
-
(2004)
EMBO J.
, vol.23
, pp. 4051-4060
-
-
Lee, Y.1
Kim, M.2
Han, J.3
Yeom, K.H.4
Lee, S.5
Baek, S.H.6
Kim, V.N.7
-
27
-
-
0141843656
-
The nuclear RNase III Drosha initiates microRNA processing
-
Lee Y., Ahn C., Han J., Choi H., Kim J., Yim J., Lee J., Provost P., Radmark O., Kim S., and Kim V.N. The nuclear RNase III Drosha initiates microRNA processing. Nature 425 (2003) 415-419
-
(2003)
Nature
, vol.425
, pp. 415-419
-
-
Lee, Y.1
Ahn, C.2
Han, J.3
Choi, H.4
Kim, J.5
Yim, J.6
Lee, J.7
Provost, P.8
Radmark, O.9
Kim, S.10
Kim, V.N.11
-
28
-
-
34248648455
-
Intronic microRNA: Discovery and biological implications
-
Li S.C., Tang P., and Lin W.C. Intronic microRNA: Discovery and biological implications. DNA Cell Biol. 26 (2007) 195-207
-
(2007)
DNA Cell Biol.
, vol.26
, pp. 195-207
-
-
Li, S.C.1
Tang, P.2
Lin, W.C.3
-
29
-
-
0037423845
-
Vertebrate microRNA genes
-
Lim L.P., Glasner M.E., Yekta S., Burge C.B., and Bartel D.P. Vertebrate microRNA genes. Science 299 (2003) 1540
-
(2003)
Science
, vol.299
, pp. 1540
-
-
Lim, L.P.1
Glasner, M.E.2
Yekta, S.3
Burge, C.B.4
Bartel, D.P.5
-
30
-
-
0037447334
-
The microRNAs of Caenorhabditis elegans
-
Lim L.P., Lau N.C., Weinstein E.G., Abdelhakim A., Yekta S., Rhoades M.W., Burge C.B., and Bartel D.P. The microRNAs of Caenorhabditis elegans. Genes Dev. 17 (2003) 991-1008
-
(2003)
Genes Dev.
, vol.17
, pp. 991-1008
-
-
Lim, L.P.1
Lau, N.C.2
Weinstein, E.G.3
Abdelhakim, A.4
Yekta, S.5
Rhoades, M.W.6
Burge, C.B.7
Bartel, D.P.8
-
31
-
-
25444490438
-
Computational evidence for hundreds of non-conserved plant microRNAs
-
Lindow M., and Krogh A. Computational evidence for hundreds of non-conserved plant microRNAs. BMC Genomics 6 (2005) 119
-
(2005)
BMC Genomics
, vol.6
, pp. 119
-
-
Lindow, M.1
Krogh, A.2
-
33
-
-
0036845822
-
Splitting pairs: The diverging fates of duplicated genes
-
Prince V.E., and Pickett F.B. Splitting pairs: The diverging fates of duplicated genes. Nature Rev. 3 (2002) 827-837
-
(2002)
Nature Rev.
, vol.3
, pp. 827-837
-
-
Prince, V.E.1
Pickett, F.B.2
-
34
-
-
6344281172
-
Identification of mammalian microRNA host genes and transcription units
-
Rodriguez A., Griffiths-Jones S., Ashurst J.L., and Bradley A. Identification of mammalian microRNA host genes and transcription units. Genome Res. 14 (2004) 1902-1910
-
(2004)
Genome Res.
, vol.14
, pp. 1902-1910
-
-
Rodriguez, A.1
Griffiths-Jones, S.2
Ashurst, J.L.3
Bradley, A.4
-
35
-
-
34447097693
-
Intronic microRNA precursors that bypass Drosha processing
-
Ruby J.G., Jan C.H., and Bartel D.P. Intronic microRNA precursors that bypass Drosha processing. Nature 448 (2007) 83-86
-
(2007)
Nature
, vol.448
, pp. 83-86
-
-
Ruby, J.G.1
Jan, C.H.2
Bartel, D.P.3
-
36
-
-
33847217997
-
Talin2 is induced during striated muscle differentiation and is targeted to stable adhesion complexes in mature muscle
-
Senetar M.A., Moncman C.L., and McCann R.O. Talin2 is induced during striated muscle differentiation and is targeted to stable adhesion complexes in mature muscle. Cell Motil. Cytoskeleton 64 (2007) 157-173
-
(2007)
Cell Motil. Cytoskeleton
, vol.64
, pp. 157-173
-
-
Senetar, M.A.1
Moncman, C.L.2
McCann, R.O.3
-
38
-
-
2342450524
-
Molecular evolution of a microRNA cluster
-
Tanzer A., and Stadler P.F. Molecular evolution of a microRNA cluster. J. Mol. Biol. 339 (2004) 327-335
-
(2004)
J. Mol. Biol.
, vol.339
, pp. 327-335
-
-
Tanzer, A.1
Stadler, P.F.2
-
39
-
-
39549097946
-
Computational and transcriptional evidence for microRNAs in the honey bee genome
-
Weaver D.B., Anzola J.M., Evans J.D., Reid J.G., Reese J.T., Childs K.L., Zdobnov E.M., Samanta M.P., Miller J., and Elsik C.G. Computational and transcriptional evidence for microRNAs in the honey bee genome. Genome Biol. 8 (2007) R97
-
(2007)
Genome Biol.
, vol.8
-
-
Weaver, D.B.1
Anzola, J.M.2
Evans, J.D.3
Reid, J.G.4
Reese, J.T.5
Childs, K.L.6
Zdobnov, E.M.7
Samanta, M.P.8
Miller, J.9
Elsik, C.G.10
-
40
-
-
11444251652
-
New human and mouse microRNA genes found by homology search
-
Weber M.J. New human and mouse microRNA genes found by homology search. FEBS J. 272 (2005) 59-73
-
(2005)
FEBS J.
, vol.272
, pp. 59-73
-
-
Weber, M.J.1
-
41
-
-
26944495173
-
MicroRNA function in animal development
-
Wienholds E., and Plasterk R.H. MicroRNA function in animal development. FEBS Lett. 579 (2005) 5911-5922
-
(2005)
FEBS Lett.
, vol.579
, pp. 5911-5922
-
-
Wienholds, E.1
Plasterk, R.H.2
-
42
-
-
34047259186
-
Improving the prediction of human microRNA target genes by using ensemble algorithm
-
Yan X., Chao T., Tu K., Zhang Y., Xie L., Gong Y., Yuan J., Qiang B., and Peng X. Improving the prediction of human microRNA target genes by using ensemble algorithm. FEBS Lett. 581 (2007) 1587-1593
-
(2007)
FEBS Lett.
, vol.581
, pp. 1587-1593
-
-
Yan, X.1
Chao, T.2
Tu, K.3
Zhang, Y.4
Xie, L.5
Gong, Y.6
Yuan, J.7
Qiang, B.8
Peng, X.9
-
43
-
-
7644237777
-
Intron-derived microRNAs-fine tuning of gene functions
-
Ying S.Y., and Lin S.L. Intron-derived microRNAs-fine tuning of gene functions. Gene 342 (2004) 25-28
-
(2004)
Gene
, vol.342
, pp. 25-28
-
-
Ying, S.Y.1
Lin, S.L.2
-
45
-
-
31544436362
-
Current perspectives in intronic micro RNAs (miRNAs)
-
Ying S.Y., and Lin S.L. Current perspectives in intronic micro RNAs (miRNAs). J. Biomed. Sci. 13 (2006) 5-15
-
(2006)
J. Biomed. Sci.
, vol.13
, pp. 5-15
-
-
Ying, S.Y.1
Lin, S.L.2
-
46
-
-
33747126827
-
Computational identification of microRNAs and their targets
-
Yoon S., and de Micheli G. Computational identification of microRNAs and their targets. Birth Defects Res. C Embryo Today 78 (2006) 118-128
-
(2006)
Birth Defects Res. C Embryo Today
, vol.78
, pp. 118-128
-
-
Yoon, S.1
de Micheli, G.2
-
47
-
-
33745594057
-
Combining multi-species genomic data for microRNA identification using a Naive Bayes classifier
-
Yousef M., Nebozhyn M., Shatkay H., Kanterakis S., Showe L.C., and Showe M.K. Combining multi-species genomic data for microRNA identification using a Naive Bayes classifier. Bioinformatics 22 (2006) 1325-1334
-
(2006)
Bioinformatics
, vol.22
, pp. 1325-1334
-
-
Yousef, M.1
Nebozhyn, M.2
Shatkay, H.3
Kanterakis, S.4
Showe, L.C.5
Showe, M.K.6
-
48
-
-
33646830110
-
Conservation and divergence of plant microRNA genes
-
Zhang B., Pan X., Cannon C.H., Cobb G.P., and Anderson T.A. Conservation and divergence of plant microRNA genes. Plant J. 46 (2006) 243-259
-
(2006)
Plant J.
, vol.46
, pp. 243-259
-
-
Zhang, B.1
Pan, X.2
Cannon, C.H.3
Cobb, G.P.4
Anderson, T.A.5
|