Development of a cell surface display system in a magnetotactic bacterium, "Magnetospirillum magneticum" AMB-1

Applied and Environmental Microbiology

Volumn 74, Issue 11, 2008, Pages 3342-3348

  Tanaka, Masayoshi ^a   Nakata, Yuko ^a   Mori, Tetsushi ^a   Okamura, Yoshiko ^a   Miyasaka, Hitoshi ^b   Takeyama, Haruko ^a   Matsunaga, Tadashi ^a  

^a TOKYO UNIVERSITY OF AGRICULTURE AND TECHNOLOGY   (Japan)

^b KANSAI ELECTRIC POWER CO   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIOLOGY; BINDING SITES; CADMIUM; CADMIUM COMPOUNDS; COMPUTER NETWORKS; DISPLAY DEVICES; FLUORESCENCE; HEAVY METALS; MAGNETIC AMPLIFIERS; MAGNETIC MATERIALS; METALS; MICROFLUIDICS; NANOPARTICLES; NANOSTRUCTURED MATERIALS; NANOSTRUCTURES; SURFACE PROPERTIES; SURFACES; TECHNOLOGY;

(OTDR) TECHNOLOGY; BACTERIAL CELL SURFACE; BIO-ADSORPTION; CELL SURFACE DISPLAYS; IMMUNOFLUORESCENCE MICROSCOPY; MAGNETIC FORCES; MAGNETIC NANOPARTICLES (MNP'S); MAGNETOTACTIC BACTERIA (MTB); METAL BINDING; NANO-SIZED; PROTEOMIC ANALYSIS; SCREENING SYSTEMS; SECONDARY STRUCTURE PREDICTION;

CELL MEMBRANES;

BACTERIAL PROTEIN; CADMIUM; HEAVY METAL; HEXAHISTIDINE; MEMBRANE SPECIFIC PROTEIN 1;

ADSORPTION; BACTERIUM; CHEMICAL BINDING; FLUORESCENCE; HEAVY METAL; IMMUNOASSAY; MAGNETIC FIELD; MICROSCOPY; PROTEIN; PROTEOMICS;

ARTICLE; BACTERIAL CELL; BACTERIAL STRAIN; BIOASSAY; CELL SURFACE; CONTROLLED STUDY; DISPLAY SYSTEM; GENOMICS; IMMUNOFLUORESCENCE MICROSCOPY; MAGNETISM; MAGNETOSPIRILLUM; MAGNETOSPIRILLUM MAGNETICUM; METAL BINDING; NONHUMAN; PROTEIN ANALYSIS; PROTEIN SECONDARY STRUCTURE; PROTEOMICS;

ADSORPTION; BACTERIAL PROTEINS; BLOTTING, WESTERN; CADMIUM; CELL FRACTIONATION; HISTIDINE; MAGNETICS; MAGNETOSPIRILLUM; MICROSCOPY, FLUORESCENCE; PROTEIN BINDING; PROTEIN STRUCTURE, SECONDARY; WATER MICROBIOLOGY;

BACTERIA (MICROORGANISMS); MAGNETOSPIRILLUM MAGNETICUM; MAGNETOSPIRILLUM MAGNETICUM AMB-1;

EID: 44949235393     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.02276-07     Document Type: Article

References (36)

1. Arora, A., F. Abildgaard, J. H. Bushweller, and L. K. Tamm. 2001. Structure of outer membrane protein A transmembrane domain by NMR spectroscopy. Nat. Struct. Biol. 8:334-338.
2. Bae, W., C. H. Wu, J. Kostal, A. Mulchandani, and W. Chen. 2003. Enhanced mercury biosorption by bacterial cells with surface-displayed MerR. Appl. Environ. Microbiol. 69:3176-3180.
3. Bazylinski, D. A. 1999. Synthesis of the bacterial magnetosome: the making of a magnetic personality. Int. Microbiol. 2:71-80.
4. 4) in a magnetotactic bacterium. Appl. Environ. Microbiol. 61:3232-3239.
5. Benhar, I., R. Azriel, L. Nahary, S. Shaky, Y. Berdichevsky, A. Tamarkin, and W. Wels. 2000. Highly efficient selection of phage antibodies mediated by display of antigen as Lpp-OmpA′ fusions on live bacteria. J. Mol. Biol. 301:893-904.
6. Blakemore, R. P. 1975. Magnetotactic bacteria. Science 190:377-379.
7. Breister, L., and J. Braman. 1999. Efficiently insert unique restriction sites into plasmid vectors. Stratagene Strateg. Newsl. 12:70-71.
8. Erglis, K., Q. Wen, V. Ose, A. Zeltins, A. Sharipo, P. A. Janmey, and A. Cebers. 2007. Dynamics of magnetotactic bacteria in a rotating magnetic field. Biophys. J. 93:1402-1412.
9. Etz, H., D. B. Minh, C. Schellack, E. Nagy, and A. Meinke. 2001. Bacterial phage receptors, versatile tools for display of polypeptides on the cell surface. J. Bacteriol. 183:6924-6935.
10. Harvey, B. R., G. Georgiou, A. Hayhurst, K. J. Jeong, B. L. Iverson, and G. K. Rogers. 2004. Anchored periplasmic expression, a versatile technology for the isolation of high-affinity antibodies from Escherichia coli-expressed libraries. Proc. Natl. Acad. Sci. USA 101:9193-9198.
11. Jones, D. T. 2007. Improving the accuracy of transmembrane protein topology prediction using evolutionary information. Bioinformatics 23:538-544.
12. Jones, D. T., W. R. Taylor, and J. M. Thornton. 1994. A model recognition approach to the prediction of all-helical membrane protein structure and topology. Biochemistry 33:3038-3049.
13. Kuhara, M., H. Takeyama, T. Tanaka, and T. Matsunaga. 2004. Magnetic cell separation using antibody binding with protein a expressed on bacterial magnetic particles. Anal. Chem. 76:6207-6213.
14. Lang, H. 2000. Outer membrane proteins as surface display systems. Int. J. Med. Microbiol. 290:579-585.
15. Lee, J. S., K. S. Shin, J. G. Pan, and C. J. Kim. 2000. Surface-displayed viral antigens on Salmonella carrier vaccine. Nat. Biotechnol. 18:645-648.
16. Lee, S. Y., J. H. Choi, and Z. Xu. 2003. Microbial cell-surface display. Trends Biotechnol. 21:45-52.
17. Majander, K., T. K. Korhonen, and B. Westerlund-Wikstrom. 2005. Simultaneous display of multiple foreign peptides in the FliD capping and FliC filament proteins of the Escherichia coli flagellum. Appl. Environ. Microbiol. 71:4263-4268.
18. Matsunaga, T., Y. Okamura, Y. Fukuda, A. T. Wahyudi, Y. Murase, and H. Takeyama. 2005. Complete genome sequence of the facultative anaerobic magnetotactic bacterium Magnetospirillum sp. strain AMB-1. DNA Res. 12:157-166.
19. Matsunaga, T., T. Suzuki, M. Tanaka, and A. Arakaki. 2007. Molecular analysis of magnetotactic bacteria and development of functional bacterial magnetic particles for nano-biotechnology. Trends Biotechnol. 25:182-188.
20. Matsunaga, T., T. Sakaguchi, and F. Tadokoro. 1991. Magnetite formation by a magnetic bacterium capable of growing aerobically. Appl. Microbiol. Biotechnol. 35:651-655.
21. Mejare, M., S. Ljung, and L. Bulow. 1998. Selection of cadmium specific hexapeptides and their expression as OmpA fusion proteins in Escherichia coll. Protein Eng. 11:489-494.
22. Okamura, Y., H. Takeyama, T. Sekine, T. Sakaguchi, A. T. Wahyudi, R. Sato, S. Kamiya, and T. Matsunaga. 2003. Design and application of a new cryptic-plasmid-based shuttle vector for Magnetospirillum magneticum. Appl. Environ. Microbiol. 69:4274-4277.
23. Ouali, M., and R. D. King. 2000. Cascaded multiple classifiers for secondary structure prediction. Protein Sci. 9:1162-1176.
24. Pautsch, A., and G. E. Schulz. 1998. Structure of the outer membrane protein A transmembrane domain. Nat. Struct. Biol 5:1013-1017.
25. Pollastri, G., D. Przybylski, B. Rost, and P. Baldi. 2002. Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles. Proteins 47:228-235.
26. Richins, R. D., I. Kaneva, A. Mulchandani, and W. Chen. 1997. Biodegradation of organophosphorus pesticides by surface-expressed organophosphorus hydrolase. Nat. Biotechnol. 15:984-987.
27. Rost, B. 1996. PHD: predicting one-dimensional protein structure by profile-based neural networks. Methods Enzymol. 266:525-539.
28. Rost, B., and C. Sander. 1994. Combining evolutionary information and neural networks to predict protein secondary structure. Proteins 19:55-72.
29. Sakaguchi, T., J. G. Burgess, and T. Matsunaga. 1993. Magnetite formation by a sulfate-reducing bacterium. Nature 365:47-49.
30. Smith, G. P. 1985. Filamentous fusion phage: novel expression vectors that display cloned antigens on the virion surface. Science 228:1315-1317.
31. Tanaka, M., Y. Okamura, A. Arakaki, T. Tanaka, H. Takeyama, and T. Matsunaga. 2006. Origin of magnetosome membrane: proteomic analysis of magnetosome membrane and comparison with cytoplasmic membrane. Proteomics 6:5234-5247.
32. Taschner, S., A. Meinke, A. von Gabain, and A. P. Boyd. 2002. Selection of peptide entry motifs by bacterial surface display. Biochem. J. 367:393-402.
33. Xu, Z., and S. Y. Lee. 1999. Display of polyhistidine peptides on the Escherichia coli cell surface by using outer membrane protein C as an anchoring motif. Appl. Environ. Microbiol. 65:5142-5147.
34. Yoshino, T., and T. Matsunaga. 2005. Development of efficient expression system for protein display on bacterial magnetic particles. Biochem. Biophys. Res. Commun. 338:1678-1681.
35. Yoshino, T., and T. Matsunaga. 2006. Efficient and stable display of functional proteins on bacterial magnetic particles using Mms13 as a novel anchor molecule. Appl. Environ. Microbiol. 72:465-471.
36. Yoshino, T., M. Takahashi, H. Takeyama, Y. Okamura, F. Kato, and T. Matsunaga. 2004. Assembly of G protein-coupled receptors onto nanosized bacterial magnetic particles using Mms16 as an anchor molecule. Appl. Environ. Microbiol. 70:2880-2885.