Suggestive association of major histocompatibility IB genetic markers with resistance to bacterial cold water disease in rainbow trout (Oncorhynchus mykiss)

Marine Biotechnology

Volumn 10, Issue 4, 2008, Pages 429-437

  Johnson, Nathan A ^a,b,c   Vallejo, Roger L ^a   Silverstein, Jeffrey T ^a   Welch, Timothy J ^a   Wiens, Gregory D ^a   Hallerman, Eric M ^b   Palti, Yniv ^a  

^a NATIONAL CENTER FOR COOL AND COLD WATER AQUACULTURE   (United States)

^b VIRGINIA POLYTECHNIC INSTITUTE AND STATE UNIVERSITY   (United States)

^c UNIVERSITY OF FLORIDA   (United States)

Author keywords

Bacterial cold water disease; Disease association; Flavobacterium psychrophilum; Linkage disequilibrium; Major histocompatibility complex; Rainbow trout fry syndrome

Indexed keywords

BACTERIAL COLD WATER DISEASE; DISEASE ASSOCIATION; FLAVOBACTERIUM PSYCHROPHILUM; LINKAGE DISEQUILIBRIUM; MAJOR HISTOCOMPATIBILITY COMPLEX; RAINBOW TROUT FRY SYNDROME;

AQUACULTURE; BACTERIA; BIOMARKERS; IMMUNOLOGY; MEDICAL PROBLEMS; PATHOGENS;

FISH;

AQUACULTURE PRODUCTION; BACTERIAL DISEASE; DISEASE RESISTANCE; GENETIC MARKER; GENETIC VARIATION; GENOMICS; IMMUNE RESPONSE; MORTALITY; PATHOGEN; SALMONID; SURVIVAL;

ANIMAL; ANIMAL DISEASE; ARTICLE; FISH DISEASE; FLAVOBACTERIACEAE INFECTION; FLAVOBACTERIUM; GENE; GENETIC LINKAGE; GENETICS; HAPLOTYPE; IMMUNOLOGY; INNATE IMMUNITY; MICROBIOLOGY; RAINBOW TROUT; SURVIVAL;

ANIMALS; FISH DISEASES; FLAVOBACTERIACEAE INFECTIONS; FLAVOBACTERIUM; GENES, MHC CLASS I; HAPLOTYPES; IMMUNITY, NATURAL; LINKAGE (GENETICS); ONCORHYNCHUS MYKISS; SURVIVAL ANALYSIS;

BACTERIA (MICROORGANISMS); FLAVOBACTERIUM; FLAVOBACTERIUM PSYCHROPHILUM; MAMMALIA; ONCORHYNCHUS MYKISS; TELEOSTEI;

EID: 44949220219     PISSN: 14362228     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10126-007-9080-7     Document Type: Article

References (52)

1. Berg P, Henryon M (1998) A comparison of mating designs for inference on genetic parameters in fish. Proc 6th World Congr Genet Appl Livest Prod 27:115-118
2. Bingulac-Popovic J, Figueroa F, Sato A, Talbot WS, Johnson SL, Gates M, Postlethwait JH, Klein J (1997) Mapping of mhc class I and class II regions to different linkage groups in the zebrafish, Danio rerio. Immunogenetics 146:129-134
3. Braud VM, Allan DS, McMichael AJ (1999) Functions of nonclassical MHC and non-MHC-encoded class I molecules. Curr Opin Immunol 11:100-108
4. Cipriano RC, Holt RA (2005) Flavobacterium psychrophilum, cause of bacterial cold-water disease and rainbow trout fry syndrome. Fish Disease Leaflet No. 86. United States Dept. of the Interior. U.S. Geological Service, National Fish Health Research Laboratory, Leetown, WV
5. Clark MS, Shaw L, Kelly A, Snell P, Elgar G (2001) Characterization of the MHC class I region of the Japanese pufferfish (Fugu rubripes). Immunogenetics 52:174-185
6. Cohen S, Tirindelli J, Gomez-Chiarri M, Nacci D (2006) Functional implications of major histocompatibility (MH) variation using estuarine fish populations. Integr Comp Biol 46:1016-1029
7. Cuesta A, Esteban MA, Meseguer J (2006) Cloning, distribution and up-regulation of the teleost fish MHC class II alpha suggests a role for granulocytes as antigen-presenting cells. Mol Immun 43:1275-1285
8. Dijkstra JM, Kiryu I, Yoshiura Y, Kumanovics A, Kohara M, Hayashi N, Ototake M (2006) Polymorphism of two very similar MHC class Ib loci in rainbow trout (Oncorhynchus mykiss). Immunogenetics 58:152-167
9. Dijkstra JM, Katagiri T, Hosomichi K, Yanagiya K, Inoko H, Ototake M, Aoki T, Hashimoto K, Shiina T (2007) A third broad lineage of major histocompatibility complex (MHC) class I in teleost fish; MHC class II linkage and processed genes. Immunogenetics 59:305-321
10. Ducrocq V, Casella G (1996) A Bayesian analysis of mixed survival models. Genet Sel Evol 28:505-529
11. Elgert KD (1996) Immunology: understanding the immune system. Wiley-Liss, New York, p p 441
12. Falconer DS, Mackay TFC (1996) Introduction to quantitative genetics. Pearson Prentice Hall, England, UK
13. Grimholt U, Larsen S, Nordmo R, Midtlyng P, Kjoeglum S, Storset A, Saebø S, Stet RJM (2003) MHC polymorphism and disease resistance in Atlantic salmon (Salmo salar); facing pathogens with single expressed major histocompatibility class I and class II loci. Immunogenetics 55:210-219
14. Hansen JD, Strassburger P, Thorgaard GH, Young WP, Du Pasquier L (1999) Expression, linkage, and polymorphism of MHC-related genes in rainbow trout, Oncorhynchus mykiss. J Immunol 163:774-786
15. Hansen TH, Huang S, Arnold PL, Fremont DH (2007) Patterns of nonclassical MHC antigen presentation. Nature Immunol 8:563-568
16. Hedrick PW, Thomson G (1983) Evidence for balancing selection at HLA. Genetics 104:449-456
17. Hedrick PW, Black FL (1997) HLA and mate selection: no evidence in South Amerindians. Am J Hum Genet 61:494-496
18. Henryon M, Berg P, Olesen NJ, Kjaer TE, Slierendrecht WJ, Jokumsen A, Lund I (2005) Selective breeding provides an approach to increase resistance of rainbow trout (Onchorhynchus mykiss) to the diseases, enteric redmouth disease, rainbow trout fry syndrome, and viral haemorrhagic septicaemia. Aquaculture 250:621-636
19. Hughes AL, Yeager M (1998) Natural selection at major histocompatibility complex loci of vertebrates. Annu Rev Genet 32:415-435
20. Johnson NA, Rexroad III CE, Hallerman EM, Vallejo RL, Palti Y (2007) Development and evaluation of a new microsatellite multiplex system for parental allocation and management of rainbow trout (Oncorhynchus mykiss) broodstocks. Aquaculture 266:53-62
21. Khakoo SI, Rajalingam R, Shum BP, Weidenbach K, Flodin L, Muir DG, Canavez F, Cooper SL, Valiante NM, Lanier LL, Parham P (2000) Rapid evolution of NK cell receptor systems demonstrated by comparison of chimpanzees and humans. Immunity 12:687-698
22. Kiryu I, Dijkstra JM, Sarder RI, Fujiwara A, Toshiura Y, Ototake M (2005) New MHC class Ia domain lineages in rainbow trout (Oncorhynchus mykiss) which are shared with other fish species. Fish Shellfish Immunol 18:243-254
23. Laird NM, Horvath S, Xu X (2000) Implementing a unified approach to family-based tests of association. Genet Epidemiol 19:S36-S42
24. Landis ED, Palti Y, Dekoning J, Drew R, Phillips RB, Hansen JD (2006) Identification and regulatory analysis of rainbow trout tapasin and tapasin-related genes. Immunogenetics 58:56-69
25. Lange C, Silverman EK, Xu X, Weiss ST, Laird NM (2003) A multivariate transmission disequilibrium test. Biostatistics 71:195-206
26. Langefors A, Lohm J, Grahn M, Andersen O, Schantz TV (2001) Association between major histocompatibility complex class IIB alleles and resistance to Aeromonas salmonicida in Atlantic salmon. Proc R Soc Lond 268:479-485
27. Liu ZJ, Cordes JF (2004) DNA marker technologies and their applications in aquaculture genetics. Aquaculture 238:1-37
28. Matsuo MY, Asakawa S, Shimizu N, Kimura H, Nonaka M (2002) Nucleotide sequence of the MHC class I genomic region of a teleost, the medaka (Oryzias latipes). Immunogenetics 53:930-940
29. Michalova V, Murray BW, Sultmann H, Klein J (2000) A contig map of the MHC class I genomic region in the zebrafish reveals ancient synteny. J Immunol 164:5296-5305
30. Miller KM, Winton JR, Schulze AD, Purcell MK, Ming TJ (2004) Major histocompatibility complex loci are associated with susceptibility of Atlantic salmon to infectious hematopoietic necrosis virus. Environ Biol Fishes 69:307-316
31. Milliken GA, Johnson DE (1984) Analysis of messy data: designed experiments, vol 1. Belmont, CA, Lifetime Learning Publications
32. Naruse K, Fukamachi S, Mitani H, Kondo M, Matsuoka T, Kondo S, Hanamura N, Morita Y, Hasegawa K, Nishigaki R, Shimada A, Wada H, Kusakabe T, Suzuki N, Kinoshita M, Kanamori A, Terado T, Kimura H, Nonaka M, Shima A (2000) A detailed linkage map of medaka, Oryzias latipes: comparative genomics and genome evolution. Genetics 154:1773-1784
33. Ozaki A, Sakamoto T, Khoo S-K, Nakamura K, Coimbra MRM, Akutsu T, Okamoto N (2001) Quantitative trait loci (QTLs) associated with resistance/ susceptibility to infectious pancreatic necrosis virus (IPNV) in rainbow trout (Oncorhynchus mykiss). Mol Genet Genom 265:23-31
34. Ozaki A, Khoo S-K, Yoshiura Y, Ototake M, Sakamoto T, Dijkstra JM, Okamoto N (2007) Identification of additional quantitative trait loci (QTL) responsible for susceptibility to infectious pancreatic necrosis virus in rainbow trout. Fish Pathol 42:131-140
35. Palti Y, Nichols KM, Waller KI, Parsons JE, Thorgaard GH (2001) Association between DNA polymorphisms tightly linked to MHC class II genes and IHN virus resistance in backcrosses of rainbow and cutthroat trout. Aquaculture 194:283-289
36. Palti Y, Silverstein JT, Wieman H, Phillips JG, Barrows FT, Parsons JE (2006) Evaluation of family growth response to fishmeal and gluten-based diets in rainbow trout (Oncorhynchus mykiss). Aquaculture 255:548-556
37. Palti Y, Rodriguez MF, Gahr SA, Hansen JD (2007) Evolutionary history of the ABCB2 genomic region in teleosts. Develop Comp Immunol 31:483-498
38. Phillips RB, Zimmerman A, Noakes MA, Palti Y, Morasch MRW, Eiben L, Ristow SS, Thorgaard GH, Hansen JD (2003) Physical and genetic mapping of the rainbow trout major histocompatibility regions: evidence for duplication of the class I region. Immunogenetics 55:561-569
39. Rexroad CE, Palti Y (2003) Development of ninety-seven polymorphic microsatellite markers for rainbow trout. Trans Am Fish Soc 132:1214-1221
40. Rexroad CE, Danzmann RG, Palti Y, Vallejo RL (2006) The NCCCWA genetic linkage map for rainbow trout. Plant & Animal Genome XIV, The International Conference on the Status of Plant and Animal Genome Research, San Diego, CA, p 261
41. Rodriguez F, Rexroad CE, Palti Y (2003) Characterization of twenty-four microsatellite markers for rainbow trout (Oncorhynchus mykiss). Mol Ecol Notes 3:619-622
42. Rodriguez M, Gahr S, Rexroad C, Palti Y (2006) A polymerase chain reaction screening method for rapid detection of microsatellites in bacterial artificial chromosomes. Mar Biotech 8:346-350
43. Sambrook JG, Russell R, Umrania Y, Edwards YJ, Campbell RD, Elgar G, Clark MS (2002) Fugu orthologues of human major histocompatibility complex genes: a genome survey. Immunogenetics 54:367-380
44. Shiina T, Dijkstra JM, Shimizu S, Watanabe A, Yanagiya K, Kiryu I, Fujiwara A, Nishida-Umehara C, Kaba Y, Hirono I, Yoshiura Y, Aoki T, Inoko H, Kulski JK, Ototake M (2005) Interchromosomal duplication of major histocompatibility complex class I regions in rainbow trout (Oncorhynchus mykiss), a species with a presumably recent tetraploid ancestry. Immunogenetics 56:878-893
45. Stephens M, Smith NJ, Donnelly P (2001) A new statistical method for haplotype reconstruction from population data. Am J Hum Genet 68:978-989
46. Stephens M, Scheet P (2005) Accounting for decay of linkage disequilbrium in haplotype inference and missing-data imputation. Am J Hum Genet 76:449-462
47. Stet RJ, Kruiswijk CP, Dixon B (2003) Major histocompatibility lineages and immune gene function in teleost fishes: the road not taken. Crit Rev Immunol 23:441-471
48. Thankappan A, Fuller JR, Godwin UB, Kearse KP, McConnell TJ (2006) Characterization of glycans on major histocompatibility complex class II molecules in channel catfish, Ictalurus punctatus. Dev Comp Immunol 30:772-782
49. Thorsen JB, Zhu E, Frengen K, Osegawa PJ, deJong PJ, Koop BF, Davidson WS, Hoyhein BA (2005) A highly redundant BAC library of Atlantic salmon (Salmo salar): an important tool for salmon projects. BMC Genomics 6:50
50. Yazdi MH, Visscher PM, Ducrocq V, Thompson R (2002) Heritability, reliability of genetic evaluations and response to selection in proportional hazards models. J Dairy Sci 85:1563-1577
51. Zhang YX, Chen SL, Liu YG, Sha ZX, Liu ZJ (2006) Major histocompatibility complex class IIB allele polymorphism and its association with resistance/susceptibility to Vibrio anguillarum in Japanese flounder (Paralichthys olivaceus). Mar Biotechnol 8:600-610
52. Zhang YX, Chen SL (2006) Molecular identification, polymorphism, and expression analysis of major histocompatibility complex class IIA and B genes of turbot (Scophthalmus maximus). Mar Biotechnol 8:611-623