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Journal of Molecular Modeling

Volumn 14, Issue 7, 2008, Pages 559-569

The 3D structure of the defense-related rice protein Pir7b predicted by homology modeling and ligand binding studies

(5) Luo, Quan a Han, Wei Wei a Zhou, Yi Han a Yao, Yuan a Li, Ze Sheng a

a JILIN UNIVERSITY (China)

Author keywords

Defense related esterase; Homology modeling; Ligand selectivity; Molecular docking; Pir7b

Indexed keywords

ASPARTIC ACID; BINDING PROTEIN; ESTERASE; GLUTAMINE; HISTIDINE; HYDROGEN; LEUCINE; PROTEIN PIR7B; SALICYCLIC ACID BINDING PROTEIN; SERINE;

ARTICLE; DETOXIFICATION; HYDROGEN BOND; LIGAND BINDING; MOLECULAR DOCKING; MOLECULAR DYNAMICS; NONHUMAN; PLANT DEFENSE; PREDICTION; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN SECONDARY STRUCTURE; PROTEIN STRUCTURE; RICE; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; THREE DIMENSIONAL IMAGING;

AMINO ACID SEQUENCE; ELECTROSTATICS; ESTERASES; LIGANDS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NAPHTHOLS; ORYZA SATIVA; PLANT PROTEINS; PROTEIN STRUCTURE, SECONDARY; SEQUENCE ALIGNMENT; STRUCTURAL HOMOLOGY, PROTEIN; THERMODYNAMICS;

MAGNAPORTHE GRISEA;

EID: 44949112154 PISSN: 16102940 EISSN: 09485023 Source Type: Journal
DOI: 10.1007/s00894-008-0310-3 Document Type: Article

Times cited : (4)

References (39)

1
- 38149143594
- Smith JA, Metraux JP (1991) Physiol Mol Plant Pathol 39:451-461
- (1991) Physiol Mol Plant Pathol , vol.39 , pp. 451-461
- Smith, J.A.¹ Metraux, J.P.²

2
- 0029158010
- Reimmann C, Hofmann C, Mauch F, Dudler R (1995) Physiol Mol Plant Pathol 46:71-81
- (1995) Physiol Mol Plant Pathol , vol.46 , pp. 71-81
- Reimmann, C.¹ Hofmann, C.² Mauch, F.³ Dudler, R.⁴

3
- 0030613334
- Zhang LH, Birch RG (1997) Appl Microbiol 82:448-454
- (1997) Appl Microbiol , vol.82 , pp. 448-454
- Zhang, L.H.¹ Birch, R.G.²

4
- 0032523910
- Waspi U, Misteli B, Hasslacher M, Jandrositz A, Kohlwein SD, Schwab H, Dudler R (1998) Eur J Biochem 254:32-37
- (1998) Eur J Biochem , vol.254 , pp. 32-37
- Waspi, U.¹ Misteli, B.² Hasslacher, M.³ Jandrositz, A.⁴ Kohlwein, S.D.⁵ Schwab, H.⁶ Dudler, R.⁷

5
- 0032784276
- Nardini M, Dijkstra BW (1999) Curr Opin Struct Biol 9:732-737
- (1999) Curr Opin Struct Biol , vol.9 , pp. 732-737
- Nardini, M.¹ Dijkstra, B.W.²

6
- 0033653715
- Fojan P, Jonson PH, Petersen MTN, Petersen SB (2000) Biochimie 82:1033-1041
- (2000) Biochimie , vol.82 , pp. 1033-1041
- Fojan, P.¹ Jonson, P.H.² Petersen, M.T.N.³ Petersen, S.B.⁴

7
- 0034465722
- Hakulinen N, Tenkanen M, Rouvinen J (2000) J Struct Bio 132:180-190
- (2000) J Struct Bio , vol.132 , pp. 180-190
- Hakulinen, N.¹ Tenkanen, M.² Rouvinen, J.³

8
- 0030801002
- Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Nucleic Acids Res 25:3389-3402
- (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
- Altschul, S.F.¹ Madden, T.L.² Schaffer, A.A.³ Zhang, J.⁴ Zhang, Z.⁵ Miller, W.⁶ Lipman, D.J.⁷

9
- 13444263252
- Forouhar F, Yang Y, Kumar D, Chen Y, Fridman E, Park SW, Chiang Y, Acton TB, Montelione GT, Pichersky E, Klessig DF, Tong L (2005) Proc Natl Acad Sci USA 102:1773-1778
- (2005) Proc Natl Acad Sci USA , vol.102 , pp. 1773-1778
- Forouhar, F.¹ Yang, Y.² Kumar, D.³ Chen, Y.⁴ Fridman, E.⁵ Park, S.W.⁶ Chiang, Y.⁷ Acton, T.B.⁸ Montelione, G.T.⁹ Pichersky, E.¹⁰ Klessig, D.F.¹¹ Tong, L.¹²

10
- 0032852375
- Zuegg J, Gruber K, Gugganig M, Wagner UG, Kratky C (1999) Protein Sci 8:1990-2000
- (1999) Protein Sci , vol.8 , pp. 1990-2000
- Zuegg, J.¹ Gruber, K.² Gugganig, M.³ Wagner, U.G.⁴ Kratky, C.⁵

11
- 0347364622
- Kumar D, Klessig DF (2003) Proc Natl Acad Sci USA 100:16101-16106
- (2003) Proc Natl Acad Sci USA , vol.100 , pp. 16101-16106
- Kumar, D.¹ Klessig, D.F.²

12
- 0344649839
- Klessig DF, Durner J, Noad R, Navarre DA, Wendehenne D, Kumar D, Zhou JM, Shah J, Zhang S, Kachroo P, Trifa Y, Pontier D, Lam E, Silva H (2000) Proc Natl Acad Sci USA 97:8849-8855
- (2000) Proc Natl Acad Sci USA , vol.97 , pp. 8849-8855
- Klessig, D.F.¹ Durner, J.² Noad, R.³ Navarre, D.A.⁴ Wendehenne, D.⁵ Kumar, D.⁶ Zhou, J.M.⁷ Shah, J.⁸ Zhang, S.⁹ Kachroo, P.¹⁰ Trifa, Y.¹¹ Pontier, D.¹² Lam, E.¹³ Silva, H.¹⁴

13
- 2442485744
- Gruber K, Gartler G, Krammer B, Schwab H, Kratky C (2004) J Biol Chem 279:20501-20510
- (2004) J Biol Chem , vol.279 , pp. 20501-20510
- Gruber, K.¹ Gartler, G.² Krammer, B.³ Schwab, H.⁴ Kratky, C.⁵

14
- 0038285421
- Raghava GPS (2000) CASP 4:75-76
- (2000) CASP , vol.4 , pp. 75-76
- Raghava, G.P.S.¹

15
- 0017873321
- Garnier J, Osguthorpe DJ, Robson B (1978) J Mol Biol 120:97-120
- (1978) J Mol Biol , vol.120 , pp. 97-120
- Garnier, J.¹ Osguthorpe, D.J.² Robson, B.³

16
- 0033995971
- Zhang CT, Zhang R (2000) J Biomol Struct Dyn 17:829-842
- (2000) J Biomol Struct Dyn , vol.17 , pp. 829-842
- Zhang, C.T.¹ Zhang, R.²

17
- 0029595442
- Geourjon C, Deleage G (1995) Comput Appl Biosci 11:681-684
- (1995) Comput Appl Biosci , vol.11 , pp. 681-684
- Geourjon, C.¹ Deleage, G.²

18
- 33745950267
- Han CL, Zhang W, Dong HT, Han X, Wang MJ (2006) Interferon Cytokine Res 26:441-448
- (2006) Interferon Cytokine Res , vol.26 , pp. 441-448
- Han, C.L.¹ Zhang, W.² Dong, H.T.³ Han, X.⁴ Wang, M.J.⁵

19
- 0026605537
- Higgins DG, Bleasby AJ, Fuchs R (1992) Comput Appl Biosci 8:189-191
- (1992) Comput Appl Biosci , vol.8 , pp. 189-191
- Higgins, D.G.¹ Bleasby, A.J.² Fuchs, R.³

20
- 44949244197
- SanDiego:Biosym/MSI
- InsightII, Homology User Guide, SanDiego:BIosym/MSI (2000)
- (2000) InsightII, Homology User Guide

21
- 0034465722
- Hakulinen N, Tenkanen M, Rouvinen J (2000) J Struct Biol 132:180-190
- (2000) J Struct Biol , vol.132 , pp. 180-190
- Hakulinen, N.¹ Tenkanen, M.² Rouvinen, J.³

22
- 33748559791
- Ke YY, Chen YC, Lin TH (2006) J Comput Chem 27:1556-1570
- (2006) J Comput Chem , vol.27 , pp. 1556-1570
- Ke, Y.Y.¹ Chen, Y.C.² Lin, T.H.³

23
- 4344691991
- Yang H, Ahn JH, Ibrahim RK, Lee S, Lim Y (2004) J Mol Graph Model 23:77-87
- (2004) J Mol Graph Model , vol.23 , pp. 77-87
- Yang, H.¹ Ahn, J.H.² Ibrahim, R.K.³ Lee, S.⁴ Lim, Y.⁵

24
- 0027169515
- Laskowski RA, Moss DS, Thornton JM (1993) J Mol Biol 231:1049-1067
- (1993) J Mol Biol , vol.231 , pp. 1049-1067
- Laskowski, R.A.¹ Moss, D.S.² Thornton, J.M.³

25
- 44949118715
- MolecularSimulations Inc, San Diego
- Insight II Profiles-3D, MolecularSimulations Inc, San Diego (2000)
- (2000) Insight II Profiles-3D

26
- 0026610767
- Luthy R, Bowie JU, Eisenberg D (1992) Nature 356:83-85
- (1992) Nature , vol.356 , pp. 83-85
- Luthy, R.¹ Bowie, J.U.² Eisenberg, D.³

27
- 0027650879
- Sippl MJ (1993) J Comput Aided Mol Des 7:473-501
- (1993) J Comput Aided Mol Des , vol.7 , pp. 473-501
- Sippl, M.J.¹

28
- 11344274827
- Frisch MJ, Trucks GW, Schlegel HB Gaussian 03 (Revision A.1) Gaussian Pittsburgh (2003)
- (2003) Gaussian 03 (Revision A.1) Gaussian Pittsburgh
- Frisch, M.J.¹ Trucks, G.W.² Schlegel, H.B.³

29
- 44949223663
- Affinity San Diego Molecular Simulations Inc
- Affinity San Diego Molecular Simulations Inc (2000)
- (2000)

30
- 0012257335
- Bartlett P A, Shea G.T, Telfer SJ, Waterman S (1989) R Soc Chem 182-196
- (1989) R Soc Chem , pp. 182-196
- Bartlett, P.A.¹ Shea, G.T.² Telfer, S.J.³ Waterman, S.⁴

31
- 84986518987
- Shoichet BK, Kuntz ID, Bodian DL (1992) J Comput. Chem 13:380-397
- (1992) J Comput. Chem , vol.13 , pp. 380-397
- Shoichet, B.K.¹ Kuntz, I.D.² Bodian, D.L.³

32
- 44949259184
- Cambridge University Press
- Harvey SC, McCammon JA (1987) Cambridge University Press
- (1987)
- Harvey, S.C.¹ McCammon, J.A.²

33
- 0037174385
- Simmerling C, Strockbine B, Roitberg AE (2002) J Am Chem Soc 124:11258-11259
- (2002) J Am Chem Soc , vol.124 , pp. 11258-11259
- Simmerling, C.¹ Strockbine, B.² Roitberg, A.E.³

34
- 32244437816
- Hornak V, Okur A, Rizzo R, Simmerling C (2006) Proc Nat Acad Sci USA 103:915-920
- (2006) Proc Nat Acad Sci USA , vol.103 , pp. 915-920
- Hornak, V.¹ Okur, A.² Rizzo, R.³ Simmerling, C.⁴

35
- 23444454552
- Case DA, Cheatham TE, Darden T, Gohlke H, Luo R, Merz KM, Onufriev A, Simmerling C, Wang B, Woods RJ (2005) J Comput Chem 26:1668-1688
- (2005) J Comput Chem , vol.26 , pp. 1668-1688
- Case, D.A.¹ Cheatham, T.E.² Darden, T.³ Gohlke, H.⁴ Luo, R.⁵ Merz, K.M.⁶ Onufriev, A.⁷ Simmerling, C.⁸ Wang, B.⁹ Woods, R.J.¹⁰

36
- 0242443693
- Ponder JW, Case DA (2003) Adv Prot Chem 66:27-85
- (2003) Adv Prot Chem , vol.66 , pp. 27-85
- Ponder, J.W.¹ Case, D.A.²

37
- 44949213053
- Melville, New York
- Pratt LR, Hummer G., Melville Ed (1999) American Institute of Physics, Melville, New York pp. 104-113
- (1999) American Institute of Physics , pp. 104-113
- Pratt, L.R.¹ Hummer, G.² Melville, Ed.³

38
- 0020997912
- Kabsch W, Sander C (1983) Biopolymers 22:2577-2637
- (1983) Biopolymers , vol.22 , pp. 2577-2637
- Kabsch, W.¹ Sander, C.²

39
- 0030775415
- Baudouin E, Charpenteau M, Roby D, Marco Y, Ranjeva R, Ranty B (1997) Eur J Biochem 248:700-706
- (1997) Eur J Biochem , vol.248 , pp. 700-706
- Baudouin, E.¹ Charpenteau, M.² Roby, D.³ Marco, Y.⁴ Ranjeva, R.⁵ Ranty, B.⁶

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