메뉴 건너뛰기




Volumn 18, Issue 3, 2008, Pages 375-381

Improvisation in evolution of genes and genomes: whose structure is it anyway?

Author keywords

[No Author keywords available]

Indexed keywords

GENE CONTROL; GENE DUPLICATION; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC VARIABILITY; MOLECULAR EVOLUTION; MUTATIONAL ANALYSIS; PRIORITY JOURNAL; PROTEIN FAMILY; PROTEIN FOLDING; PROTEIN STRUCTURE; REVIEW;

EID: 44949085337     PISSN: 0959440X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.sbi.2008.02.007     Document Type: Review
Times cited : (4)

References (72)
  • 1
    • 0031924363 scopus 로고    scopus 로고
    • The frequency distribution of gene family sizes in complete genomes
    • Huynen M.A., and van Nimwegen E. The frequency distribution of gene family sizes in complete genomes. Mol Biol Evol 15 (1998) 583-589
    • (1998) Mol Biol Evol , vol.15 , pp. 583-589
    • Huynen, M.A.1    van Nimwegen, E.2
  • 2
    • 0037195119 scopus 로고    scopus 로고
    • Expanding protein universe and its origin from the biological Big Bang
    • Dokholyan N.V., Shakhnovich B., and Shakhnovich E.I. Expanding protein universe and its origin from the biological Big Bang. Proc Natl Acad Sci U S A 99 (2002) 14132-14136
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 14132-14136
    • Dokholyan, N.V.1    Shakhnovich, B.2    Shakhnovich, E.I.3
  • 3
    • 0035798398 scopus 로고    scopus 로고
    • Protein family and fold occurrence in genomes: power-law behaviour and evolutionary model
    • Qian J., Luscombe N.M., and Gerstein M. Protein family and fold occurrence in genomes: power-law behaviour and evolutionary model. J Mol Biol 313 (2001) 673-681
    • (2001) J Mol Biol , vol.313 , pp. 673-681
    • Qian, J.1    Luscombe, N.M.2    Gerstein, M.3
  • 4
    • 0037079014 scopus 로고    scopus 로고
    • The structure of the protein universe and genome evolution
    • Koonin E.V., Wolf Y.I., and Karev G.P. The structure of the protein universe and genome evolution. Nature 420 (2002) 218-223
    • (2002) Nature , vol.420 , pp. 218-223
    • Koonin, E.V.1    Wolf, Y.I.2    Karev, G.P.3
  • 5
    • 33846782884 scopus 로고    scopus 로고
    • Divergent evolution of a structural proteome: phenomenological models
    • Roland C.B., and Shakhnovich E.I. Divergent evolution of a structural proteome: phenomenological models. Biophys J 92 (2007) 701-716
    • (2007) Biophys J , vol.92 , pp. 701-716
    • Roland, C.B.1    Shakhnovich, E.I.2
  • 6
    • 28944434433 scopus 로고    scopus 로고
    • Modeling genome evolution with a diffusion approximation of a birth-and-death process
    • Karev G.P., Berezovskaya F.S., and Koonin E.V. Modeling genome evolution with a diffusion approximation of a birth-and-death process. Bioinformatics 21 Suppl 3 (2005) iii12-iii19
    • (2005) Bioinformatics , vol.21 , Issue.SUPPL. 3
    • Karev, G.P.1    Berezovskaya, F.S.2    Koonin, E.V.3
  • 7
    • 0033660945 scopus 로고    scopus 로고
    • The evolution of duplicated genes considering protein stability constraints
    • Taverna D.M., and Goldstein R.M. The evolution of duplicated genes considering protein stability constraints. Pac Symp Biocomput (2000) 69-80
    • (2000) Pac Symp Biocomput , pp. 69-80
    • Taverna, D.M.1    Goldstein, R.M.2
  • 8
    • 33846515095 scopus 로고    scopus 로고
    • Thermodynamics of neutral protein evolution
    • In this paper authors present a consistent master equation approach to dynamics of protein stability evolution.
    • Bloom J.D., Raval A., and Wilke C.O. Thermodynamics of neutral protein evolution. Genetics 175 (2007) 255-266. In this paper authors present a consistent master equation approach to dynamics of protein stability evolution.
    • (2007) Genetics , vol.175 , pp. 255-266
    • Bloom, J.D.1    Raval, A.2    Wilke, C.O.3
  • 9
    • 0033987966 scopus 로고    scopus 로고
    • The distribution of structures in evolving protein populations
    • Taverna D.M., and Goldstein R.A. The distribution of structures in evolving protein populations. Biopolymers 53 (2000) 1-8
    • (2000) Biopolymers , vol.53 , pp. 1-8
    • Taverna, D.M.1    Goldstein, R.A.2
  • 10
    • 34547607777 scopus 로고    scopus 로고
    • A first-principles model of early evolution: emergence of gene families, species, and preferred protein folds
    • A first attempt to model evolution of protein structure in multigene organisms with protein stability as a constraint on phenotype. Showed that evolved protein universe and gene families feature power-law distributions on multiple scales.
    • Zeldovich K.B., Chen P., Shakhnovich B.E., and Shakhnovich E.I. A first-principles model of early evolution: emergence of gene families, species, and preferred protein folds. PLoS Comput Biol 3 (2007) e139. A first attempt to model evolution of protein structure in multigene organisms with protein stability as a constraint on phenotype. Showed that evolved protein universe and gene families feature power-law distributions on multiple scales.
    • (2007) PLoS Comput Biol , vol.3
    • Zeldovich, K.B.1    Chen, P.2    Shakhnovich, B.E.3    Shakhnovich, E.I.4
  • 11
    • 36049027813 scopus 로고    scopus 로고
    • Protein stability imposes limits on organism complexity and speed of molecular evolution
    • An analytical study of dynamics of protein evolution based on the hypercube fitness landscape. Established strict 'speed limit' of six mutations per genome per replication beyond which genomes lose stability of their essential genes.
    • Zeldovich K.B., Chen P., and Shakhnovich E.I. Protein stability imposes limits on organism complexity and speed of molecular evolution. Proc Natl Acad Sci U S A 104 (2007) 16152-16157. An analytical study of dynamics of protein evolution based on the hypercube fitness landscape. Established strict 'speed limit' of six mutations per genome per replication beyond which genomes lose stability of their essential genes.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 16152-16157
    • Zeldovich, K.B.1    Chen, P.2    Shakhnovich, E.I.3
  • 12
    • 0041718387 scopus 로고    scopus 로고
    • Birth and death of protein domains: a simple model of evolution explains power law behavior
    • Karev G.P., Wolf Y.I., Rzhetsky A.Y., Berezovskaya F.S., and Koonin E.V. Birth and death of protein domains: a simple model of evolution explains power law behavior. BMC Evol Biol 2 (2002) 18
    • (2002) BMC Evol Biol , vol.2 , pp. 18
    • Karev, G.P.1    Wolf, Y.I.2    Rzhetsky, A.Y.3    Berezovskaya, F.S.4    Koonin, E.V.5
  • 15
    • 0030947344 scopus 로고    scopus 로고
    • Molecular evidence for an ancient duplication of the entire yeast genome
    • Wolfe K.H., and Shields D.C. Molecular evidence for an ancient duplication of the entire yeast genome. Nature 387 (1997) 708-713
    • (1997) Nature , vol.387 , pp. 708-713
    • Wolfe, K.H.1    Shields, D.C.2
  • 16
    • 34347209089 scopus 로고    scopus 로고
    • Independent sorting-out of thousands of duplicated gene pairs in two yeast species descended from a whole-genome duplication
    • Scannell D.R., Frank A.C., Conant G.C., Byrne K.P., Woolfit M., and Wolfe K.H. Independent sorting-out of thousands of duplicated gene pairs in two yeast species descended from a whole-genome duplication. Proc Natl Acad Sci U S A 104 (2007) 8397-8402
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 8397-8402
    • Scannell, D.R.1    Frank, A.C.2    Conant, G.C.3    Byrne, K.P.4    Woolfit, M.5    Wolfe, K.H.6
  • 17
    • 33645023614 scopus 로고    scopus 로고
    • Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts
    • Scannell D.R., Byrne K.P., Gordon J.L., Wong S., and Wolfe K.H. Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts. Nature 440 (2006) 341-345
    • (2006) Nature , vol.440 , pp. 341-345
    • Scannell, D.R.1    Byrne, K.P.2    Gordon, J.L.3    Wong, S.4    Wolfe, K.H.5
  • 20
    • 34547421112 scopus 로고    scopus 로고
    • Defining functional distance using manifold embeddings of gene ontology annotations
    • Lerman G., and Shakhnovich B.E. Defining functional distance using manifold embeddings of gene ontology annotations. Proc Natl Acad Sci U S A 104 (2007) 11334-11339
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 11334-11339
    • Lerman, G.1    Shakhnovich, B.E.2
  • 21
    • 0037423764 scopus 로고    scopus 로고
    • Functional fingerprints of folds: evidence for correlated structure-function evolution
    • Shakhnovich B.E., Dokholyan N.V., DeLisi C., and Shakhnovich E.I. Functional fingerprints of folds: evidence for correlated structure-function evolution. J Mol Biol 326 (2003) 1-9
    • (2003) J Mol Biol , vol.326 , pp. 1-9
    • Shakhnovich, B.E.1    Dokholyan, N.V.2    DeLisi, C.3    Shakhnovich, E.I.4
  • 22
    • 33646909100 scopus 로고    scopus 로고
    • Protein family expansions and biological complexity
    • Vogel C., and Chothia C. Protein family expansions and biological complexity. PLoS Comput Biol 2 (2006) e48
    • (2006) PLoS Comput Biol , vol.2
    • Vogel, C.1    Chothia, C.2
  • 23
    • 20044383938 scopus 로고    scopus 로고
    • Alternative splicing and gene duplication are inversely correlated evolutionary mechanisms
    • Kopelman N.M., Lancet D., and Yanai I. Alternative splicing and gene duplication are inversely correlated evolutionary mechanisms. Nat Genet 37 (2005) 588-589
    • (2005) Nat Genet , vol.37 , pp. 588-589
    • Kopelman, N.M.1    Lancet, D.2    Yanai, I.3
  • 25
    • 34548501747 scopus 로고    scopus 로고
    • Natural history and evolutionary principles of gene duplication in fungi
    • Wapinski I., Pfeffer A., Friedman N., and Regev A. Natural history and evolutionary principles of gene duplication in fungi. Nature 449 (2007) 54-61
    • (2007) Nature , vol.449 , pp. 54-61
    • Wapinski, I.1    Pfeffer, A.2    Friedman, N.3    Regev, A.4
  • 26
    • 38549148421 scopus 로고    scopus 로고
    • Evolutionary rate analyses of orthologs and paralogs from 12 Drosophila genomes
    • Heger A., and Ponting C.P. Evolutionary rate analyses of orthologs and paralogs from 12 Drosophila genomes. Genome Res 17 (2007) 1837-1849
    • (2007) Genome Res , vol.17 , pp. 1837-1849
    • Heger, A.1    Ponting, C.P.2
  • 27
    • 0029184185 scopus 로고
    • Boltzmann-like statistics of protein architectures. Origins and consequences
    • Finkelstein A.V., Gutin A.M., and Badretdinov A. Boltzmann-like statistics of protein architectures. Origins and consequences. Subcell Biochem 24 (1995) 1-26
    • (1995) Subcell Biochem , vol.24 , pp. 1-26
    • Finkelstein, A.V.1    Gutin, A.M.2    Badretdinov, A.3
  • 28
    • 0029772552 scopus 로고    scopus 로고
    • Emergence of preferred structures in a simple model of protein folding
    • Li H., Helling R., Tang C., and Wingreen N. Emergence of preferred structures in a simple model of protein folding. Science 273 (1996) 666-669
    • (1996) Science , vol.273 , pp. 666-669
    • Li, H.1    Helling, R.2    Tang, C.3    Wingreen, N.4
  • 29
    • 0041673352 scopus 로고    scopus 로고
    • Structural determinant of protein designability
    • England J.L., and Shakhnovich E.I. Structural determinant of protein designability. Phys Rev Lett 90 (2003) 218101
    • (2003) Phys Rev Lett , vol.90 , pp. 218101
    • England, J.L.1    Shakhnovich, E.I.2
  • 30
    • 15544390249 scopus 로고    scopus 로고
    • Protein structure and evolutionary history determine sequence space topology
    • Shakhnovich B.E., Deeds E., Delisi C., and Shakhnovich E. Protein structure and evolutionary history determine sequence space topology. Genome Res 15 (2005) 385-392
    • (2005) Genome Res , vol.15 , pp. 385-392
    • Shakhnovich, B.E.1    Deeds, E.2    Delisi, C.3    Shakhnovich, E.4
  • 31
    • 33747892053 scopus 로고    scopus 로고
    • Relative contributions of structural designability and functional diversity in molecular evolution of duplicates
    • Shakhnovich B.E. Relative contributions of structural designability and functional diversity in molecular evolution of duplicates. Bioinformatics 22 (2006) e440-445
    • (2006) Bioinformatics , vol.22
    • Shakhnovich, B.E.1
  • 32
    • 34047204789 scopus 로고    scopus 로고
    • Proportion of solvent-exposed amino acids in a protein and rate of protein evolution
    • In this paper the authors demonstrate that buried residues evolve more slowly than surface ones - in agreement with in silico modeling.
    • Lin Y.S., Hsu W.L., Hwang J.K., and Li W.H. Proportion of solvent-exposed amino acids in a protein and rate of protein evolution. Mol Biol Evol 24 (2007) 1005-1011. In this paper the authors demonstrate that buried residues evolve more slowly than surface ones - in agreement with in silico modeling.
    • (2007) Mol Biol Evol , vol.24 , pp. 1005-1011
    • Lin, Y.S.1    Hsu, W.L.2    Hwang, J.K.3    Li, W.H.4
  • 33
    • 33748143748 scopus 로고    scopus 로고
    • Structural determinants of the rate of protein evolution in yeast
    • Bloom J.D., Drummond D.A., Arnold F.H., and Wilke C.O. Structural determinants of the rate of protein evolution in yeast. Mol Biol Evol 23 (2006) 1751-1761
    • (2006) Mol Biol Evol , vol.23 , pp. 1751-1761
    • Bloom, J.D.1    Drummond, D.A.2    Arnold, F.H.3    Wilke, C.O.4
  • 34
    • 33747872771 scopus 로고    scopus 로고
    • Origins and impact of constraints in evolution of gene families
    • Shakhnovich B.E., and Koonin E.V. Origins and impact of constraints in evolution of gene families. Genome Res 16 (2006) 1529-1536
    • (2006) Genome Res , vol.16 , pp. 1529-1536
    • Shakhnovich, B.E.1    Koonin, E.V.2
  • 35
    • 0034632830 scopus 로고    scopus 로고
    • Evolvability of an RNA virus is determined by its mutational neighbourhood
    • Burch C.L., and Chao L. Evolvability of an RNA virus is determined by its mutational neighbourhood. Nature 406 (2000) 625-628
    • (2000) Nature , vol.406 , pp. 625-628
    • Burch, C.L.1    Chao, L.2
  • 36
    • 0034634395 scopus 로고    scopus 로고
    • The evolutionary fate and consequences of duplicate genes
    • Lynch M., and Conery J.S. The evolutionary fate and consequences of duplicate genes. Science 290 (2000) 1151-1155
    • (2000) Science , vol.290 , pp. 1151-1155
    • Lynch, M.1    Conery, J.S.2
  • 37
    • 0033972072 scopus 로고    scopus 로고
    • The probability of duplicate gene preservation by subfunctionalization
    • Lynch M., and Force A. The probability of duplicate gene preservation by subfunctionalization. Genetics 154 (2000) 459-473
    • (2000) Genetics , vol.154 , pp. 459-473
    • Lynch, M.1    Force, A.2
  • 38
    • 19344363466 scopus 로고    scopus 로고
    • Preferential duplication of conserved proteins in eukaryotic genomes
    • Davis J.C., and Petrov D.A. Preferential duplication of conserved proteins in eukaryotic genomes. PLoS Biol 2 (2004) E55
    • (2004) PLoS Biol , vol.2
    • Davis, J.C.1    Petrov, D.A.2
  • 39
    • 3042591076 scopus 로고    scopus 로고
    • Common pattern of evolution of gene expression level and protein sequence in Drosophila
    • Nuzhdin S.V., Wayne M.L., Harmon K.L., and McIntyre L.M. Common pattern of evolution of gene expression level and protein sequence in Drosophila. Mol Biol Evol 21 (2004) 1308-1317
    • (2004) Mol Biol Evol , vol.21 , pp. 1308-1317
    • Nuzhdin, S.V.1    Wayne, M.L.2    Harmon, K.L.3    McIntyre, L.M.4
  • 40
    • 17744376961 scopus 로고    scopus 로고
    • Evolution of proteins and gene expression levels are coupled in Drosophila and are independently associated with mRNA abundance, protein length, and number of protein-protein interactions
    • Lemos B., Bettencourt B.R., Meiklejohn C.D., and Hartl D.L. Evolution of proteins and gene expression levels are coupled in Drosophila and are independently associated with mRNA abundance, protein length, and number of protein-protein interactions. Mol Biol Evol 22 (2005) 1345-1354
    • (2005) Mol Biol Evol , vol.22 , pp. 1345-1354
    • Lemos, B.1    Bettencourt, B.R.2    Meiklejohn, C.D.3    Hartl, D.L.4
  • 41
    • 34548527460 scopus 로고    scopus 로고
    • Comparative analysis indicates regulatory neofunctionalization of yeast duplicates
    • The authors point out to an interesting evolutionary path through expression divergence of yeats duplicates.
    • Tirosh I., and Barkai N. Comparative analysis indicates regulatory neofunctionalization of yeast duplicates. Genome Biol 8 (2007) R50. The authors point out to an interesting evolutionary path through expression divergence of yeats duplicates.
    • (2007) Genome Biol , vol.8
    • Tirosh, I.1    Barkai, N.2
  • 42
    • 33745583768 scopus 로고    scopus 로고
    • A genetic signature of interspecies variations in gene expression
    • Tirosh I., Weinberger A., Carmi M., and Barkai N. A genetic signature of interspecies variations in gene expression. Nat Genet 38 (2006) 830-834
    • (2006) Nat Genet , vol.38 , pp. 830-834
    • Tirosh, I.1    Weinberger, A.2    Carmi, M.3    Barkai, N.4
  • 43
    • 34250785284 scopus 로고    scopus 로고
    • Genetic properties influencing the evolvability of gene expression
    • The authors showed that genes in S. cerevisae with greater sensitivity to mutations are also more sensitive to systematic environmental perturbations and stochastic noise.
    • Landry C.R., Lemos B., Rifkin S.A., Dickinson W.J., and Hartl D.L. Genetic properties influencing the evolvability of gene expression. Science 317 (2007) 118-121. The authors showed that genes in S. cerevisae with greater sensitivity to mutations are also more sensitive to systematic environmental perturbations and stochastic noise.
    • (2007) Science , vol.317 , pp. 118-121
    • Landry, C.R.1    Lemos, B.2    Rifkin, S.A.3    Dickinson, W.J.4    Hartl, D.L.5
  • 44
    • 30744441602 scopus 로고    scopus 로고
    • A single determinant dominates the rate of yeast protein evolution
    • Drummond D.A., Raval A., and Wilke C.O. A single determinant dominates the rate of yeast protein evolution. Mol Biol Evol 23 (2006) 327-337
    • (2006) Mol Biol Evol , vol.23 , pp. 327-337
    • Drummond, D.A.1    Raval, A.2    Wilke, C.O.3
  • 45
    • 0038157152 scopus 로고    scopus 로고
    • Dosage sensitivity and the evolution of gene families in yeast
    • Papp B., Pal C., and Hurst L.D. Dosage sensitivity and the evolution of gene families in yeast. Nature 424 (2003) 194-197
    • (2003) Nature , vol.424 , pp. 194-197
    • Papp, B.1    Pal, C.2    Hurst, L.D.3
  • 48
    • 33750399436 scopus 로고    scopus 로고
    • Statistically enhanced self-attraction of random patterns
    • Lukatsky D.B., Zeldovich K.B., and Shakhnovich E.I. Statistically enhanced self-attraction of random patterns. Phys Rev Lett 97 (2006) 178101
    • (2006) Phys Rev Lett , vol.97 , pp. 178101
    • Lukatsky, D.B.1    Zeldovich, K.B.2    Shakhnovich, E.I.3
  • 49
    • 28644437048 scopus 로고    scopus 로고
    • The importance of sequence diversity in the aggregation and evolution of proteins
    • Wright C.F., Teichmann S.A., Clarke J., and Dobson C.M. The importance of sequence diversity in the aggregation and evolution of proteins. Nature 438 (2005) 878-881
    • (2005) Nature , vol.438 , pp. 878-881
    • Wright, C.F.1    Teichmann, S.A.2    Clarke, J.3    Dobson, C.M.4
  • 50
    • 17844390103 scopus 로고    scopus 로고
    • Novel specificities emerge by stepwise duplication of functional modules
    • Pereira-Leal J.B., and Teichmann S.A. Novel specificities emerge by stepwise duplication of functional modules. Genome Res 15 (2005) 552-559
    • (2005) Genome Res , vol.15 , pp. 552-559
    • Pereira-Leal, J.B.1    Teichmann, S.A.2
  • 51
    • 33847768609 scopus 로고    scopus 로고
    • Functional anthology of intrinsic disorder. 1. Biological processes and functions of proteins with long disordered regions
    • Xie H., Vucetic S., Iakoucheva L.M., Oldfield C.J., Dunker A.K., Uversky V.N., and Obradovic Z. Functional anthology of intrinsic disorder. 1. Biological processes and functions of proteins with long disordered regions. J Proteome Res 6 (2007) 1882-1898
    • (2007) J Proteome Res , vol.6 , pp. 1882-1898
    • Xie, H.1    Vucetic, S.2    Iakoucheva, L.M.3    Oldfield, C.J.4    Dunker, A.K.5    Uversky, V.N.6    Obradovic, Z.7
  • 52
    • 0029670994 scopus 로고    scopus 로고
    • Conserved residues and the mechanism of protein folding
    • Shakhnovich E., Abkevich V., and Ptitsyn O. Conserved residues and the mechanism of protein folding. Nature 379 (1996) 96-98
    • (1996) Nature , vol.379 , pp. 96-98
    • Shakhnovich, E.1    Abkevich, V.2    Ptitsyn, O.3
  • 53
    • 0345062357 scopus 로고    scopus 로고
    • Universally conserved positions in protein folds: reading evolutionary signals about stability, folding kinetics and function
    • Mirny L.A., and Shakhnovich E.I. Universally conserved positions in protein folds: reading evolutionary signals about stability, folding kinetics and function. J Mol Biol 291 (1999) 177-196
    • (1999) J Mol Biol , vol.291 , pp. 177-196
    • Mirny, L.A.1    Shakhnovich, E.I.2
  • 54
    • 0035823119 scopus 로고    scopus 로고
    • Understanding hierarchical protein evolution from first principles
    • Dokholyan N.V., and Shakhnovich E.I. Understanding hierarchical protein evolution from first principles. J Mol Biol 312 (2001) 289-307
    • (2001) J Mol Biol , vol.312 , pp. 289-307
    • Dokholyan, N.V.1    Shakhnovich, E.I.2
  • 55
    • 23944490117 scopus 로고    scopus 로고
    • Missense meanderings in sequence space: a biophysical view of protein evolution
    • DePristo M.A., Weinreich D.M., and Hartl D.L. Missense meanderings in sequence space: a biophysical view of protein evolution. Nat Rev Genet 6 (2005) 678-687
    • (2005) Nat Rev Genet , vol.6 , pp. 678-687
    • DePristo, M.A.1    Weinreich, D.M.2    Hartl, D.L.3
  • 58
    • 0031935580 scopus 로고    scopus 로고
    • Serial increase in the thermal stability of 3-isopropylmalate dehydrogenase from Bacillus subtilis by experimental evolution
    • Akanuma S., Yamagishi A., Tanaka N., and Oshima T. Serial increase in the thermal stability of 3-isopropylmalate dehydrogenase from Bacillus subtilis by experimental evolution. Protein Sci 7 (1998) 698-705
    • (1998) Protein Sci , vol.7 , pp. 698-705
    • Akanuma, S.1    Yamagishi, A.2    Tanaka, N.3    Oshima, T.4
  • 59
    • 0036139093 scopus 로고    scopus 로고
    • Why are proteins marginally stable?
    • Taverna D.M., and Goldstein R.A. Why are proteins marginally stable?. Proteins 46 (2002) 105-109
    • (2002) Proteins , vol.46 , pp. 105-109
    • Taverna, D.M.1    Goldstein, R.A.2
  • 60
    • 0027438090 scopus 로고
    • A new approach to the design of stable proteins
    • Shakhnovich E.I., and Gutin A.M. A new approach to the design of stable proteins. Protein Eng 6 (1993) 793-800
    • (1993) Protein Eng , vol.6 , pp. 793-800
    • Shakhnovich, E.I.1    Gutin, A.M.2
  • 61
    • 0031745665 scopus 로고    scopus 로고
    • Protein design: a perspective from simple tractable models
    • Shakhnovich E.I. Protein design: a perspective from simple tractable models. Fold Des 3 (1998) R45-58
    • (1998) Fold Des , vol.3
    • Shakhnovich, E.I.1
  • 62
    • 33646931471 scopus 로고    scopus 로고
    • Protein folding thermodynamics and dynamics: where physics, chemistry, and biology meet
    • Shakhnovich E.I. Protein folding thermodynamics and dynamics: where physics, chemistry, and biology meet. Chem Rev 106 (2006) 1559-1588
    • (2006) Chem Rev , vol.106 , pp. 1559-1588
    • Shakhnovich, E.I.1
  • 65
    • 0035811016 scopus 로고    scopus 로고
    • RNA virus error catastrophe: direct molecular test by using ribavirin
    • Crotty S., Cameron C.E., and Andino R. RNA virus error catastrophe: direct molecular test by using ribavirin. Proc Natl Acad Sci U S A 98 (2001) 6895-6900
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 6895-6900
    • Crotty, S.1    Cameron, C.E.2    Andino, R.3
  • 66
    • 34748891057 scopus 로고    scopus 로고
    • Curated list of prokaryote viruses with fully sequenced genomes
    • Ackermann H.W., and Kropinski A.M. Curated list of prokaryote viruses with fully sequenced genomes. Res Microbiol 158 (2007) 555-566
    • (2007) Res Microbiol , vol.158 , pp. 555-566
    • Ackermann, H.W.1    Kropinski, A.M.2
  • 67
    • 0036330981 scopus 로고    scopus 로고
    • The Phage Proteomic Tree: a genome-based taxonomy for phage
    • Rohwer F., and Edwards R. The Phage Proteomic Tree: a genome-based taxonomy for phage. J Bacteriol 184 (2002) 4529-4535
    • (2002) J Bacteriol , vol.184 , pp. 4529-4535
    • Rohwer, F.1    Edwards, R.2
  • 68
    • 34547652871 scopus 로고    scopus 로고
    • Analysis of the phage sequence space: the benefit of structured information
    • A detailed analysis of sequence space of phage genomes showing unusually high proportion of ORFans.
    • Lima-Mendez G., Toussaint A., and Leplae R. Analysis of the phage sequence space: the benefit of structured information. Virology 365 (2007) 241-249. A detailed analysis of sequence space of phage genomes showing unusually high proportion of ORFans.
    • (2007) Virology , vol.365 , pp. 241-249
    • Lima-Mendez, G.1    Toussaint, A.2    Leplae, R.3
  • 69
    • 0033514996 scopus 로고    scopus 로고
    • Evolutionary relationships among diverse bacteriophages and prophages: all the world's a phage
    • Hendrix R.W., Smith M.C., Burns R.N., Ford M.E., and Hatfull G.F. Evolutionary relationships among diverse bacteriophages and prophages: all the world's a phage. Proc Natl Acad Sci U S A 96 (1999) 2192-2197
    • (1999) Proc Natl Acad Sci U S A , vol.96 , pp. 2192-2197
    • Hendrix, R.W.1    Smith, M.C.2    Burns, R.N.3    Ford, M.E.4    Hatfull, G.F.5
  • 70
    • 15544380021 scopus 로고    scopus 로고
    • Prokaryotic phylogenies inferred from protein structural domains
    • Deeds E.J., Hennessey H., and Shakhnovich E.I. Prokaryotic phylogenies inferred from protein structural domains. Genome Res 15 (2005) 393-402
    • (2005) Genome Res , vol.15 , pp. 393-402
    • Deeds, E.J.1    Hennessey, H.2    Shakhnovich, E.I.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.