-
1
-
-
3142768191
-
Biclustering algorithms for biological data analysis: A survey
-
17048406
-
Madeira S Oliveira A Biclustering algorithms for biological data analysis: A survey IEEE/ACM Trans Comput Biol Bioinform 2004, 1(1):24-45. 17048406
-
(2004)
IEEE/ACM Trans Comput Biol Bioinform
, vol.1
, Issue.1
, pp. 24-45
-
-
Madeira, S.1
Oliveira, A.2
-
2
-
-
0036645183
-
Interactively Exploring Hierarchical Clustering Results by Interactive Exploration of Dendrograms, a Case Study with Genomic Microarray Data
-
Seo J Shneiderman B Interactively Exploring Hierarchical Clustering Results by Interactive Exploration of Dendrograms, a Case Study with Genomic Microarray Data IEEE Computer 2002, 35(7):80-86.
-
(2002)
IEEE Computer
, vol.35
, Issue.7
, pp. 80-86
-
-
Seo, J.1
Shneiderman, B.2
-
4
-
-
34548735304
-
BiVisu: Software Tool for Bicluster Detection and Visualization
-
17586826
-
Cheng KO Law NF Siu WC Lau TH BiVisu: Software Tool for Bicluster Detection and Visualization Bioinformatics 2007, 23(17):2342-2344. 17586826
-
(2007)
Bioinformatics
, vol.23
, Issue.17
, pp. 2342-2344
-
-
Cheng, K.O.1
Law, N.F.2
Siu, W.C.3
Lau, T.H.4
-
6
-
-
28444464348
-
The plane with parallel coordinates
-
Inselberg A The plane with parallel coordinates The Visual Computer 1985, 1:69-91.
-
(1985)
The Visual Computer
, vol.1
, pp. 69-91
-
-
Inselberg, A.1
-
8
-
-
9444225935
-
Java Treeview-extensible visualization of microarray data
-
15180930
-
Saldanha AJ Java Treeview-extensible visualization of microarray data Bioinformatics 2004, 20(17):3246-3248. 15180930
-
(2004)
Bioinformatics
, vol.20
, Issue.17
, pp. 3246-3248
-
-
Saldanha, A.J.1
-
9
-
-
18744414877
-
gCLUTO: An Interactive Clustering, Visualization and Analysis System
-
University of Minnesota
-
Rasmussen M Karypis G gCLUTO: An Interactive Clustering, Visualization and Analysis System Tech Rep. 04-021 University of Minnesota 2004
-
(2004)
Tech Rep. 04-021
-
-
Rasmussen, M.1
Karypis, G.2
-
10
-
-
25444533045
-
Visualization methods for statistical analysis of microarray clusters
-
1156867 15890080
-
Hibbs MA Dirksen NC Li K Troyanskaya OG Visualization methods for statistical analysis of microarray clusters BMC Bioinformatics 2005, 6(115):. 1156867 15890080
-
(2005)
BMC Bioinformatics
, vol.6
, Issue.115
-
-
Hibbs, M.A.1
Dirksen, N.C.2
Li, K.3
Troyanskaya, O.G.4
-
11
-
-
0034069495
-
Gene Ontology: Tool for the unification of biology. The Gene Ontology Consortium
-
10802651
-
Ashburner M Ball CA Blake JA Bolsteing D Butler H Cherry JM Davis AP Dolinski K Dwight SS Eppig JT Harris MA Hill DP Issel-Tarver L Kasarskis A Lewis S Matese JC Richardson JE Ringwald M Rubin GM Sherlock G Gene Ontology: Tool for the unification of biology. The Gene Ontology Consortium Nature Genetics 2000, 25:25-29. 10802651
-
(2000)
Nature Genetics
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Bolsteing, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
12
-
-
0036578795
-
Network motifs in the transcriptional regulation network of Escherichia coli
-
11967538
-
Shen-Orr SS Milo R Mangan S Alon U Network motifs in the transcriptional regulation network of Escherichia coli Nature Genetics 2002, 31:64-68. 11967538
-
(2002)
Nature Genetics
, vol.31
, pp. 64-68
-
-
Shen-Orr, S.S.1
Milo, R.2
Mangan, S.3
Alon, U.4
-
13
-
-
13544269611
-
An extended transcriptional regulatory network of Escherichia coli and analysis of its hierarchical structure and network motifs
-
545451 15604458
-
Ma HW Kumar B Ditges U Gunzer F Buer J Zeng AP An extended transcriptional regulatory network of Escherichia coli and analysis of its hierarchical structure and network motifs Nucleic Acids Research 2004, 32(22):6643-6649. 545451 15604458
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.22
, pp. 6643-6649
-
-
Ma, H.W.1
Kumar, B.2
Ditges, U.3
Gunzer, F.4
Buer, J.5
Zeng, A.P.6
-
14
-
-
0242490780
-
A Software Environment for Integrated Models of Biomolecular Interaction Networks
-
403769 14597658
-
Shannon P Markiel A Ozier O Baliga NS Wang JT Ramage D Amin N Schwikowski B Ideker T A Software Environment for Integrated Models of Biomolecular Interaction Networks Genome Res 2003, 13(11):2498-2504. 403769 14597658
-
(2003)
Genome Res
, vol.13
, Issue.11
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
Amin, N.7
Schwikowski, B.8
Ideker, T.9
-
15
-
-
34250210806
-
Hawkeye: An interactive visual analytics tool for genome assemblies
-
1868940 17349036
-
Schatz MC Phillippy AM Shneiderman B Salzberg SL Hawkeye: An interactive visual analytics tool for genome assemblies Genome Biology 2007, 8(3):. http://amos.sourceforge.net/hawkeye/ 1868940 17349036
-
(2007)
Genome Biology
, vol.8
, Issue.3
-
-
Schatz, M.C.1
Phillippy, A.M.2
Shneiderman, B.3
Salzberg, S.L.4
-
16
-
-
33646137384
-
A systematic comparison and evaluation of biclustering methods for gene expression data
-
16500941
-
Prelic A Bleuer S Zimmermann P Wille A Buhlmann P Gruissem W Hennig L Thiele L Zitzler E A systematic comparison and evaluation of biclustering methods for gene expression data Bioinformatics 2006, 22(9):1122-1129. 16500941
-
(2006)
Bioinformatics
, vol.22
, Issue.9
, pp. 1122-1129
-
-
Prelic, A.1
Bleuer, S.2
Zimmermann, P.3
Wille, A.4
Buhlmann, P.5
Gruissem, W.6
Hennig, L.7
Thiele, L.8
Zitzler, E.9
-
23
-
-
4544339167
-
Defining transcription modules using large-scale gene expression data
-
15044247
-
Ihmels J Bergmann S Barkai N Defining transcription modules using large-scale gene expression data Bioinformatics 2004, 20:1993-2003. 15044247
-
(2004)
Bioinformatics
, vol.20
, pp. 1993-2003
-
-
Ihmels, J.1
Bergmann, S.2
Barkai, N.3
-
24
-
-
0242690489
-
Discovering local structure in gene expression data: The order-preserving submatrix problem
-
12935334
-
Ben-Dor A Chor B Karp R Yakhini Z Discovering local structure in gene expression data: The order-preserving submatrix problem Journal of Computational Biology 2003, 10:373-384. 12935334
-
(2003)
Journal of Computational Biology
, vol.10
, pp. 373-384
-
-
Ben-Dor, A.1
Chor, B.2
Karp, R.3
Yakhini, Z.4
-
25
-
-
0029055848
-
Identification of three mannoproteins in the cell wall of Saccharomyces cerevisiae
-
176999 7768807
-
Vaart van der JM Caro LH Chapman JW Klis FM Verrips CT Identification of three mannoproteins in the cell wall of Saccharomyces cerevisiae Journal of Bacteriology 1995, 177(11):3104-3110. 176999 7768807
-
(1995)
Journal of Bacteriology
, vol.177
, Issue.11
, pp. 3104-3110
-
-
Vaart, J.M.1
Caro, L.H.2
Chapman, J.W.3
Klis, F.M.4
Verrips, C.T.5
-
26
-
-
0033918537
-
Spo1, a phospholipase B homolog, is required for spindle pole body duplication during meiosis in Saccharomyces cerevisiae
-
10855497
-
Tevzadze GG Swift H Esposito RE Spo1, a phospholipase B homolog, is required for spindle pole body duplication during meiosis in Saccharomyces cerevisiae Chromosoma 2000, 109(1-2):72-85. 10855497
-
(2000)
Chromosoma
, vol.109
, Issue.1-2
, pp. 72-85
-
-
Tevzadze, G.G.1
Swift, H.2
Esposito, R.E.3
-
29
-
-
33845675644
-
Balancing Systematic and Flexible Exploration of Social Networks
-
Perer A Shneiderman B Balancing Systematic and Flexible Exploration of Social Networks IEEE Trans on Vis and Comp Graphics 2006, 12(5):693-700.
-
(2006)
IEEE Trans on Vis and Comp Graphics
, vol.12
, Issue.5
, pp. 693-700
-
-
Perer, A.1
Shneiderman, B.2
-
30
-
-
33845617967
-
Visual Exploration of Complex Time-Varying Graphs
-
Kumar G Garland M Visual Exploration of Complex Time-Varying Graphs IEEE Trans on Vis and Comp Graph 2006, 12(5):805-812.
-
(2006)
IEEE Trans on Vis and Comp Graph
, vol.12
, Issue.5
, pp. 805-812
-
-
Kumar, G.1
Garland, M.2
-
31
-
-
84974526628
-
-
San Diego, Calif.: Morgan Kaufmann
-
Ware C Perception for Design San Diego, Calif.: Morgan Kaufmann 1999
-
(1999)
Perception for Design
-
-
Ware, C.1
-
33
-
-
0037399130
-
Spectral Biclustering of Microarray Data: Coclustering Genes and Conditions
-
430175 12671006
-
Kluger Y Basri R Chang JT Gerstein M Spectral Biclustering of Microarray Data: Coclustering Genes and Conditions Genome Res 2003, 13:703-716. 430175 12671006
-
(2003)
Genome Res
, vol.13
, pp. 703-716
-
-
Kluger, Y.1
Basri, R.2
Chang, J.T.3
Gerstein, M.4
-
36
-
-
42649119431
-
BicOverlapper: A tool for bicluster visualization
-
18321885
-
Santamaría R Therón R Quintales L BicOverlapper: A tool for bicluster visualization Bioinformatics 2008, 24(9):1212-1213. 18321885
-
(2008)
Bioinformatics
, vol.24
, Issue.9
, pp. 1212-1213
-
-
Santamaría, R.1
Therón, R.2
Quintales, L.3
-
39
-
-
84886762439
-
-
BicOverlapper http://vis.usal.es/bicoverlapper
-
BicOverlapper
-
-
-
40
-
-
33144486498
-
SynTReN: A generator of synthetic gene expression data for design and analysis of structure learning algorithms
-
den Bulcke TV Leemput KV Naudts B van Remortel P Ma H Verschoren A Moor BD Marchal K SynTReN: A generator of synthetic gene expression data for design and analysis of structure learning algorithms BMC Bioinformatics 2006, 7(43):. http://www.biomedcentral.com/1471-2105/7/43
-
(2006)
BMC Bioinformatics
, vol.7
, Issue.43
-
-
den Bulcke, T.V.1
Leemput, K.V.2
Naudts, B.3
van Remortel, P.4
Ma, H.5
Verschoren, A.6
Moor, B.D.7
Marchal, K.8
|