Minimal distance transformations between links and polymers: Principles and examples

Journal of Physics Condensed Matter

Volumn 20, Issue 24, 2008, Pages

  Mohazab, Ali R ^a   Plotkin, Steven S ^a  

^a UNIVERSITY OF BRITISH COLUMBIA   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

CHEMICALS; INVERSE KINEMATICS; INVERSE PROBLEMS; MATHEMATICAL TRANSFORMATIONS; ONE DIMENSIONAL; PROTEIN FOLDING;

(I ,J) CONDITIONS; CURVATURE (SORI); EUCLIDEAN DISTANCE (ED); INVERSE KINEMATIC PROBLEMS; MINIMAL DISTANCE; MOTOR LEARNING; NECESSARY AND SUFFICIENT CONDITIONS; ONE-DIMENSIONAL; PHARMACOPHORE IDENTIFICATION; PIECEWISE ROTATIONS; POLYMER LENGTHS; POTENTIAL APPLICATIONS; STRUCTURAL ALIGNMENTS; TRANSITION (JEL CLASSIFICATIONS:E52 ,E41 ,E31);

POLYMERS;

EID: 44649193777     PISSN: 09538984     EISSN: 1361648X     Source Type: Journal    
DOI: 10.1088/0953-8984/20/24/244133     Document Type: Conference Paper

References (13)

1. Plotkin S S 2007 Generalization of distance to higher dimensional objects Proc. Natl Acad. Sci. USA 104 14899-904
2. Gelfand I M and Fomin S V 2000 Calculus of Variations (New York: Dover)
3. Greene J, Kahn S, Savaj H, Sprague P and Teig S 1994 Chemical function queries for 3D database search J. Chem. Inf. Comput. Sci. 34 1297-308
4. Lemmen C and Lengauer T 2000 Computational methods for the structural alignment of molecules J. Comput. Aided Mol. Des. 14 215-31
5. Patel Y, Gillet V J, Bravi G and Leach A R 2002 A comparison of the pharmacophore identification programs: catalyst, DISCO and GASP J. Comput. Aided Mol. Des. 16 653-81
6. Gerstein M and Levitt M 1998 Comprehensive assessment of automatic structural alignment against a manual standard Protein Sci. 7 445-56
7. Baker D and Sali A 2001 Protein structure prediction and structural genomics Science 294 93-6
8. Ueda Y, Taketomi H and G N 1975 Studies on protein folding, unfolding and fluctuations by computer simulation. I. The effects of specific amino acid sequence represented by specific inter-unit interactions Int. J. Peptide Res. 7 445-59
9. Shea J and Brooks C III 2001 From folding theories to folding proteins: a review and assessment of simulation studies of protein folding and unfolding Annu. Rev. Phys. Chem. 52 499-535
10. Clementi C and Plotkin S S 2004 The effects of nonnative interactions on protein folding rates: theory and simulation Protein Sci. 13 1750-66
11. Kawato M 1996 Advances in Motor Learning and Control ed H N Zelaznik (Champaign, IL: Human Kinetics) pp225-59
12. Onsager L and Machlup S 1953 Fluctuations and irreversible processes Phys. Rev. 91 1505-12
13. Sega M, Faccioli P, Pederiva F, Garberoglio G and Orland H 2007 Quantitative protein dynamics from dominant folding pathways Phys. Rev. Lett. 99 118102