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Volumn 389, Issue 4, 2008, Pages 395-403

5′-End maturation of tRNA in Aquifex aeolicus

Author keywords

Aquifex aeolicus; Aquifex pyrophilus; Aquificales; RNase P; rnpA

Indexed keywords

BACTERIAL ENZYME; BUFFER; MAGNESIUM ION; MANGANESE; MICROCOCCAL NUCLEASE; RIBONUCLEASE P; RNA; TRANSFER RNA;

EID: 44649177016     PISSN: 14316730     EISSN: 14374315     Source Type: Journal    
DOI: 10.1515/BC.2008.042     Document Type: Article
Times cited : (25)

References (35)
  • 1
    • 0031736121 scopus 로고    scopus 로고
    • Evidence for massive gene exchange between archaeal and bacterial hyperthermophiles
    • Aravind, L., Tatusov, R.L., Wolf, Y.I., Walker, D.R., and Koonin, E.V. (1998). Evidence for massive gene exchange between archaeal and bacterial hyperthermophiles. Trends Genet. 14, 442-444.
    • (1998) Trends Genet , vol.14 , pp. 442-444
    • Aravind, L.1    Tatusov, R.L.2    Wolf, Y.I.3    Walker, D.R.4    Koonin, E.V.5
  • 2
    • 1242273880 scopus 로고    scopus 로고
    • Interaction of the Bacillus subtilis RNase P with the 30S ribosomal subunit
    • Barrera, A. and Pan, T. (2004). Interaction of the Bacillus subtilis RNase P with the 30S ribosomal subunit. RNA 10, 482-492.
    • (2004) RNA , vol.10 , pp. 482-492
    • Barrera, A.1    Pan, T.2
  • 3
    • 0029587036 scopus 로고
    • Arrangement and nucleotide sequence of the gene (fus) encoding elongation factor G (EF-G) from the hyperthermophilic bacterium Aquifex pyrophilus: Phylogenetic depth of hyperthermophilic bacteria inferred from analysis of the EF-G/fus sequences
    • Bocchetta, M., Ceccarelli, E., Creti, R., Sanangelantoni, A.M., Tiboni, O., and Cammarano, P. (1995). Arrangement and nucleotide sequence of the gene (fus) encoding elongation factor G (EF-G) from the hyperthermophilic bacterium Aquifex pyrophilus: phylogenetic depth of hyperthermophilic bacteria inferred from analysis of the EF-G/fus sequences. J. Mol. Evol. 41, 803-812.
    • (1995) J. Mol. Evol , vol.41 , pp. 803-812
    • Bocchetta, M.1    Ceccarelli, E.2    Creti, R.3    Sanangelantoni, A.M.4    Tiboni, O.5    Cammarano, P.6
  • 4
    • 0033948149 scopus 로고    scopus 로고
    • Phylogenetic depth of the bacterial genera Aquifex and Thermotoga inferred from analysis of ribosomal protein, elongation factor, and RNA polymerase subunit sequences
    • Bocchetta, M., Gribaldo, S., Sanangelantoni, A., and Cammarano, P. (2000). Phylogenetic depth of the bacterial genera Aquifex and Thermotoga inferred from analysis of ribosomal protein, elongation factor, and RNA polymerase subunit sequences. J. Mol. Evol. 50, 366-380.
    • (2000) J. Mol. Evol , vol.50 , pp. 366-380
    • Bocchetta, M.1    Gribaldo, S.2    Sanangelantoni, A.3    Cammarano, P.4
  • 5
    • 0035818595 scopus 로고    scopus 로고
    • Metal ion cooperativity in ribozyme cleavage of RNA
    • Brännvall, M. and Kirsebom, L.A. (2001). Metal ion cooperativity in ribozyme cleavage of RNA. Proc. Natl. Acad. Sci. USA 98, 12943-12947.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 12943-12947
    • Brännvall, M.1    Kirsebom, L.A.2
  • 6
    • 0037462873 scopus 로고    scopus 로고
    • Importance of the q73/294 interaction in Escherichia coli RNase P RNA substrate complexes for cleavage and metal ion coordination
    • Brännvall, M., Pettersson, B.M., and Kirsebom, L.A. (2003). Importance of the q73/294 interaction in Escherichia coli RNase P RNA substrate complexes for cleavage and metal ion coordination. J. Mol. Biol. 325, 697-709.
    • (2003) J. Mol. Biol , vol.325 , pp. 697-709
    • Brännvall, M.1    Pettersson, B.M.2    Kirsebom, L.A.3
  • 7
    • 27144527101 scopus 로고    scopus 로고
    • Protein activation of a ribozyme: The role of bacterial RNase P protein
    • Buck, A.H., Dalby, A.B., Poole, A.W., Kazantsev, A.V., and Pace, N.R. (2005). Protein activation of a ribozyme: the role of bacterial RNase P protein. EMBO J. 24, 3360-3368.
    • (2005) EMBO J , vol.24 , pp. 3360-3368
    • Buck, A.H.1    Dalby, A.B.2    Poole, A.W.3    Kazantsev, A.V.4    Pace, N.R.5
  • 9
    • 0024204333 scopus 로고
    • The unusually long amino acid acceptor stem of Escherichia coli selenocysteine tRNA results from abnormal cleavage by RNase P
    • Burkard, U. and Söll, D. (1988). The unusually long amino acid acceptor stem of Escherichia coli selenocysteine tRNA results from abnormal cleavage by RNase P. Nucleic Acids Res. 16, 11617-11624.
    • (1988) Nucleic Acids Res , vol.16 , pp. 11617-11624
    • Burkard, U.1    Söll, D.2
  • 10
    • 0034674157 scopus 로고    scopus 로고
    • Differential role of the intermolecular base-pairs G292-C(75) and G293-C(74) in the reaction catalyzed by Escherichia coli RNase P RNA
    • Busch, S., Kirsebom, L.A., Notbohm, H., and Hartmann, R.K. (2000). Differential role of the intermolecular base-pairs G292-C(75) and G293-C(74) in the reaction catalyzed by Escherichia coli RNase P RNA. J. Mol. Biol. 299, 941-951.
    • (2000) J. Mol. Biol , vol.299 , pp. 941-951
    • Busch, S.1    Kirsebom, L.A.2    Notbohm, H.3    Hartmann, R.K.4
  • 11
    • 18244368739 scopus 로고    scopus 로고
    • Studies on Escherichia coli RNase P RNA with Zn2q as the catalytic cofactor
    • Cuzic, S. and Hartmann, R.K. (2005) Studies on Escherichia coli RNase P RNA with Zn2q as the catalytic cofactor. Nucleic Acids Res. 33, 2464-2474.
    • (2005) Nucleic Acids Res , vol.33 , pp. 2464-2474
    • Cuzic, S.1    Hartmann, R.K.2
  • 13
    • 0022530665 scopus 로고
    • Metal ion requirements and other aspects of the reaction catalyzed by M1 RNA, the RNA subunit of ribonuclease P from Escherichia coli
    • Guerrier-Takada, C., Haydock, K., Allen, L., and Altman, S. (1986). Metal ion requirements and other aspects of the reaction catalyzed by M1 RNA, the RNA subunit of ribonuclease P from Escherichia coli. Biochemistry 25, 1509-1515.
    • (1986) Biochemistry , vol.25 , pp. 1509-1515
    • Guerrier-Takada, C.1    Haydock, K.2    Allen, L.3    Altman, S.4
  • 14
    • 0033823160 scopus 로고    scopus 로고
    • The phylogeny of proteobacteria: Relationships to other eubacterial phyla and eukaryotes
    • Gupta, R.S. (2000). The phylogeny of proteobacteria: relationships to other eubacterial phyla and eukaryotes. FEMS Microbiol. Rev. 24, 367-402.
    • (2000) FEMS Microbiol. Rev , vol.24 , pp. 367-402
    • Gupta, R.S.1
  • 15
    • 0141450351 scopus 로고    scopus 로고
    • The enigma of ribonuclease P evolution
    • Hartmann, E. and Hartmann, R.K. (2003). The enigma of ribonuclease P evolution. Trends Genet. 19, 561-569.
    • (2003) Trends Genet , vol.19 , pp. 561-569
    • Hartmann, E.1    Hartmann, R.K.2
  • 16
    • 0032590013 scopus 로고    scopus 로고
    • Guanosine 2-NH2 groups of Escherichia coli RNase P RNA involved in intramolecular tertiary contacts and direct interactions with tRNA
    • Heide, C., Pfeiffer, T., Nolan, J.M., and Hartmann, R.K. (1999). Guanosine 2-NH2 groups of Escherichia coli RNase P RNA involved in intramolecular tertiary contacts and direct interactions with tRNA. RNA 5, 102-116.
    • (1999) RNA , vol.5 , pp. 102-116
    • Heide, C.1    Pfeiffer, T.2    Nolan, J.M.3    Hartmann, R.K.4
  • 17
    • 0026801580 scopus 로고    scopus 로고
    • Huber, R., Wilharm, T., Huber, D., Trincone, A., Burggraf, S., König, H., Rachel, R., Rockinger, I., Fricke, H., and Stetter, K.O. (1992). Aquifex pyrophilus gen. nov. sp. nov., represents a novel group of marine hyperthermophilic hydrogen-oxidizing bacteria. Syst. Appl. Microbiol. 15, 340-351.
    • Huber, R., Wilharm, T., Huber, D., Trincone, A., Burggraf, S., König, H., Rachel, R., Rockinger, I., Fricke, H., and Stetter, K.O. (1992). Aquifex pyrophilus gen. nov. sp. nov., represents a novel group of marine hyperthermophilic hydrogen-oxidizing bacteria. Syst. Appl. Microbiol. 15, 340-351.
  • 18
    • 44649095604 scopus 로고    scopus 로고
    • Experimental RNomics: A global approach to identify non-coding RNAs in model organisms
    • R.K. Hartmann, A. Bindereif, A. Schön and E. Westhof, eds, Weinheim, Germany: Wiley-VCH, pp
    • Hüttenhofer, A. (2005). Experimental RNomics: a global approach to identify non-coding RNAs in model organisms. In: Handbook of RNA Biochemistry, R.K. Hartmann, A. Bindereif, A. Schön and E. Westhof, eds. (Weinheim, Germany: Wiley-VCH), pp. 643-654.
    • (2005) Handbook of RNA Biochemistry , pp. 643-654
    • Hüttenhofer, A.1
  • 19
    • 11144297942 scopus 로고    scopus 로고
    • Characterization of Aquifex aeolicus RNase E/G
    • Kaberdin, V.R. and Bizebard, T. (2005). Characterization of Aquifex aeolicus RNase E/G. Biochem. Biophys. Res. Commun. 327, 382-392.
    • (2005) Biochem. Biophys. Res. Commun , vol.327 , pp. 382-392
    • Kaberdin, V.R.1    Bizebard, T.2
  • 20
    • 34848863932 scopus 로고    scopus 로고
    • RNase P RNA mediated cleavage: Substrate recognition and catalysis
    • Kirsebom, L.A. (2007). RNase P RNA mediated cleavage: substrate recognition and catalysis. Biochimie 89, 1183-1194.
    • (2007) Biochimie , vol.89 , pp. 1183-1194
    • Kirsebom, L.A.1
  • 21
    • 0032955637 scopus 로고    scopus 로고
    • RNA polymerase of Aquifex pyrophilus: Implications for the evolution of the bacterial rpoBC operon and extremely thermophilic bacteria
    • Klenk, H.P., Meier, T.D., Durovic, P., Schwass, V., Lottspeich, F., Dennis, P.P., and Zillig, W. (1999). RNA polymerase of Aquifex pyrophilus: implications for the evolution of the bacterial rpoBC operon and extremely thermophilic bacteria. J. Mol. Evol. 48, 528-541.
    • (1999) J. Mol. Evol , vol.48 , pp. 528-541
    • Klenk, H.P.1    Meier, T.D.2    Durovic, P.3    Schwass, V.4    Lottspeich, F.5    Dennis, P.P.6    Zillig, W.7
  • 22
    • 0037199416 scopus 로고    scopus 로고
    • The affinity of magnesium binding sites in the Bacillus subtilis RNase P•pre-tRNA complex is enhanced by the protein subunit
    • Kurz, J.C. and Fierke, C.A. (2002). The affinity of magnesium binding sites in the Bacillus subtilis RNase P•pre-tRNA complex is enhanced by the protein subunit. Biochemistry 41, 9545-9558.
    • (2002) Biochemistry , vol.41 , pp. 9545-9558
    • Kurz, J.C.1    Fierke, C.A.2
  • 24
    • 4644225942 scopus 로고    scopus 로고
    • In search of RNase P RNA from microbial genomes
    • Li, Y. and Altman, S. (2004). In search of RNase P RNA from microbial genomes. RNA 10, 1533-1540.
    • (2004) RNA , vol.10 , pp. 1533-1540
    • Li, Y.1    Altman, S.2
  • 25
    • 33751119816 scopus 로고    scopus 로고
    • Thermostable RNase P RNAs lacking P18 identified in the Aquificales
    • Marszalkowski, M., Teune, J.H., Steger, G., Hartmann, R.K., and Willkomm, D.K. (2006). Thermostable RNase P RNAs lacking P18 identified in the Aquificales. RNA 12, 1915-1921.
    • (2006) RNA , vol.12 , pp. 1915-1921
    • Marszalkowski, M.1    Teune, J.H.2    Steger, G.3    Hartmann, R.K.4    Willkomm, D.K.5
  • 26
    • 38049073261 scopus 로고    scopus 로고
    • Structural basis of a ribozyme's thermostability: P1 L9 inter-domain interaction in RNase P RNA
    • Marszalkowski, M., Willkomm, D.K., and Hartmann, R.K. (2008). Structural basis of a ribozyme's thermostability: P1 L9 inter-domain interaction in RNase P RNA. RNA 14, 127-133.
    • (2008) RNA , vol.14 , pp. 127-133
    • Marszalkowski, M.1    Willkomm, D.K.2    Hartmann, R.K.3
  • 27
    • 0022652241 scopus 로고
    • The additional guanylate at the 5′ terminus of Escherichia coli tRNAHis is the result of unusual processing by RNase P
    • Orellana, O., Cooley, L., and Soll, D. (1986). The additional guanylate at the 5′ terminus of Escherichia coli tRNAHis is the result of unusual processing by RNase P. Mol. Cell. Biol. 6, 525-529.
    • (1986) Mol. Cell. Biol , vol.6 , pp. 525-529
    • Orellana, O.1    Cooley, L.2    Soll, D.3
  • 28
    • 0015523504 scopus 로고
    • Purification and properties of a specific Escherichia coli ribonuclease which cleaves a tyrosine transfer ribonucleic acid precursor
    • Robertson, H.D., Altman, S., and Smith, J.D. (1972). Purification and properties of a specific Escherichia coli ribonuclease which cleaves a tyrosine transfer ribonucleic acid precursor. J. Biol. Chem. 247, 5243-5251.
    • (1972) J. Biol. Chem , vol.247 , pp. 5243-5251
    • Robertson, H.D.1    Altman, S.2    Smith, J.D.3
  • 29
    • 0026792946 scopus 로고
    • Influence of metal ions on the ribonuclease P reaction. Distinguishing substrate binding from catalysis
    • Smith, D., Burgin, A.B., Haas, E.S., and Pace, N.R. (1992). Influence of metal ions on the ribonuclease P reaction. Distinguishing substrate binding from catalysis. J. Biol. Chem. 267, 2429-2436.
    • (1992) J. Biol. Chem , vol.267 , pp. 2429-2436
    • Smith, D.1    Burgin, A.B.2    Haas, E.S.3    Pace, N.R.4
  • 30
    • 0035145345 scopus 로고    scopus 로고
    • Genome of Aquifex aeolicus
    • Swanson, R.V. (2001). Genome of Aquifex aeolicus. Methods Enzymol. 330, 158-169.
    • (2001) Methods Enzymol , vol.330 , pp. 158-169
    • Swanson, R.V.1
  • 31
    • 0000997789 scopus 로고
    • Novel mechanisms for maturation of chloroplast transfer RNA precursors
    • Wang, M.J., Davis, N.W., and Gegenheimer, P. (1988). Novel mechanisms for maturation of chloroplast transfer RNA precursors. EMBO J. 7, 1567-1574.
    • (1988) EMBO J , vol.7 , pp. 1567-1574
    • Wang, M.J.1    Davis, N.W.2    Gegenheimer, P.3
  • 32
    • 33645512683 scopus 로고    scopus 로고
    • Wegscheid, B., Condon, C., and Hartmann, R.K. (2006). Type A and B RNase P RNAs are interchangeable in vivo despite substantial biophysical differences. EMBO Rep. 7, 411-417.
    • Wegscheid, B., Condon, C., and Hartmann, R.K. (2006). Type A and B RNase P RNAs are interchangeable in vivo despite substantial biophysical differences. EMBO Rep. 7, 411-417.
  • 33
    • 0036703285 scopus 로고    scopus 로고
    • tRNA maturation in Aquifex aeolicus
    • Willkomm, D.K., Feltens, R., and Hartmann, R.K. (2002). tRNA maturation in Aquifex aeolicus. Biochimie 84, 713-722.
    • (2002) Biochimie , vol.84 , pp. 713-722
    • Willkomm, D.K.1    Feltens, R.2    Hartmann, R.K.3
  • 34
    • 17144365857 scopus 로고    scopus 로고
    • Experimental RNomics in Aquifex aeolicus: Identification of small non-coding RNAs and the putative 6S RNA homolog
    • Willkomm, D.K., Minnerup, J., Huttenhofer, A., and Hartmann, R.K. (2005). Experimental RNomics in Aquifex aeolicus: identification of small non-coding RNAs and the putative 6S RNA homolog. Nucleic Acids Res. 33, 1949-1960.
    • (2005) Nucleic Acids Res , vol.33 , pp. 1949-1960
    • Willkomm, D.K.1    Minnerup, J.2    Huttenhofer, A.3    Hartmann, R.K.4
  • 35
    • 0038475910 scopus 로고    scopus 로고
    • Recognition of the 5' leader of pre-tRNA substrates by the active site of ribonuclease P
    • Zahler, N.H., Christian, E.L., and Harris, M.E. (2003). Recognition of the 5' leader of pre-tRNA substrates by the active site of ribonuclease P. RNA 9, 734-745.
    • (2003) RNA , vol.9 , pp. 734-745
    • Zahler, N.H.1    Christian, E.L.2    Harris, M.E.3


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