Solution Structure and Sugar-Binding Mechanism of Mouse Latrophilin-1 RBL: a 7TM Receptor-Attached Lectin-Like Domain

Structure

Volumn 16, Issue 6, 2008, Pages 944-953

  Vakonakis, Ioannis ^a   Langenhan, Tobias ^a   Prömel, Simone ^a   Russ, Andreas ^a   Campbell, Iain D ^a  

^a UNIVERSITY OF OXFORD   (United Kingdom)

Author keywords

CELLBIO; PROTEINS; SIGNALING

Indexed keywords

ALPHA LATROTOXIN; CARBOHYDRATE BINDING PROTEIN; G PROTEIN COUPLED RECEPTOR; LATROPHILIN 1; LECTIN; MEMBRANE RECEPTOR; MONOSACCHARIDE; RHAMNOSE; SLIT PROTEIN; SUGAR;

AMINO ACID SEQUENCE; ARTICLE; MOUSE; MUTAGENESIS; NONHUMAN; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN DOMAIN; PROTEIN FOLDING; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE; SEQUENCE ALIGNMENT; SOLUTION STRUCTURE;

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; ANIMALS; CARBOHYDRATES; LECTINS; MICE; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PROTEIN BINDING; PROTEIN STRUCTURE, TERTIARY; RECEPTORS, PEPTIDE; RHAMNOSE; SEQUENCE HOMOLOGY, AMINO ACID; SOLUTIONS;

METAZOA;

EID: 44649159561     PISSN: 09692126     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.str.2008.02.020     Document Type: Article

References (41)

1. Acharya S., Patanjali S.R., Sajjan S.U., Gopalakrishnan B., and Surolia A. Thermodynamic analysis of ligand binding to winged bean (Psophocarpus tetragonolobus) acidic agglutinin reveals its specificity for terminally monofucosylated H-reactive sugars. J. Biol. Chem. 265 (1990) 11586-11594
2. Aspberg A., Miura R., Bourdoulous S., Shimonaka M., Heinegard D., Schachner M., Ruoslahti E., and Yamaguchi Y. The C-type lectin domains of lecticans, a family of aggregating chondroitin sulfate proteoglycans, bind tenascin-R by protein-protein interactions independent of carbohydrate moiety. Proc. Natl. Acad. Sci. USA 94 (1997) 10116-10121
3. Berjanskii M.V., Neal S., and Wishart D.S. PREDITOR: a web server for predicting protein torsion angle restraints. Nucleic Acids Res. 34 (2006) W63-W69 10.1093/nar/gkl341 Published online July 1, 2006
4. Bettler B., Maier R., Ruegg D., and Hofstetter H. Binding site for IgE of the human lymphocyte low-affinity Fc epsilon receptor (Fc epsilon RII/CD23) is confined to the domain homologous with animal lectins. Proc. Natl. Acad. Sci. USA 86 (1989) 7118-7122
5. Bjarnadottir T.K., Fredriksson R., and Schioth H.B. The adhesion GPCRs: a unique family of G protein-coupled receptors with important roles in both central and peripheral tissues. Cell. Mol. Life Sci. 64 (2007) 2104-2119
6. Clore G.M., and Garrett D.S. R-factor, free R, and complete cross-validation for dipolar coupling refinement of NMR structures. J. Am. Chem. Soc. 121 (1999) 9008-9012
7. Clore G.M., and Schwieters C.D. Docking of protein-protein complexes on the basis of highly ambiguous intermolecular distance restraints derived from 1H/15N chemical shift mapping and backbone 15N-1H residual dipolar couplings using conjoined rigid body/torsion angle dynamics. J. Am. Chem. Soc. 125 (2003) 2902-2912
8. Cornilescu G., Delaglio F., and Bax A. Protein backbone angle restraints from searching a database for chemical shift and sequence homology. J. Biomol. NMR 13 (1999) 289-302
9. 2+. EMBO J. 17 (1998) 3909-3920
10. Dominguez C., Boelens R., and Bonvin A.M. HADDOCK: a protein-protein docking approach based on biochemical or biophysical information. J. Am. Chem. Soc. 125 (2003) 1731-1737
11. Dutta S., Akey I.V., Dingwall C., Hartman K.L., Laue T., Nolte R.T., Head J.F., and Akey C.W. The crystal structure of nucleoplasmin-core: implications for histone binding and nucleosome assembly. Mol. Cell 8 (2001) 841-853
12. Fujisawa K., Wrana J.L., and Culotti J.G. The slit receptor EVA-1 coactivates a SAX-3/Robo mediated guidance signal in C. elegans. Science 317 (2007) 1934-1938
13. Grishaev A., and Bax A. An empirical backbone-backbone hydrogen-bonding potential in proteins and its applications to NMR structure refinement and validation. J. Am. Chem. Soc. 126 (2004) 7281-7292
14. Holm L., and Sander C. Touring protein fold space with Dali/FSSP. Nucleic Acids Res. 26 (1998) 316-319
15. Hosono M., Ishikawa K., Mineki R., Murayama K., Numata C., Ogawa Y., Takayanagi Y., and Nitta K. Tandem repeat structure of rhamnose-binding lectin from catfish (Silurus asotus) eggs. Biochim. Biophys. Acta 1472 (1999) 668-675
16. Kreienkamp H.J., Soltau M., Richter D., and Bockers T. Interaction of G-protein-coupled receptors with synaptic scaffolding proteins. Biochem. Soc. Trans. 30 (2002) 464-468
17. Krissinel E., and Henrick K. Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions. Acta Crystallogr. D Biol. Crystallogr. 60 (2004) 2256-2268
18. Kuszewski J., Qin J., Gronenborn A.M., and Clore G.M. The impact of direct refinement against 13C alpha and 13C beta chemical shifts on protein structure determination by NMR. J. Magn. Reson. B. 106 (1995) 92-96
19. Kuszewski J., Gronenborn A.M., and Clore G.M. Improving the quality of NMR and crystallographic protein structures by means of a conformational database potential derived from structure databases. Protein Sci. 5 (1996) 1067-1080
20. Kuszewski J., Gronenborn A.M., and Clore G.M. Improving the packing and accuracy of NMR structures with a pseudopotential for the radius of gyration. J. Am. Chem. Soc. 121 (1999) 2337-2338
21. Lee W., Revington M.J., Arrowsmith C., and Kay L.E. A pulsed field gradient isotope-filtered 3D 13C HMQC-NOESY experiment for extracting intermolecular NOE contacts in molecular complexes. FEBS Lett. 350 (1994) 87-90
22. Lelianova V.G., Davletov B.A., Sterling A., Rahman M.A., Grishin E.V., Totty N.F., and Ushkaryov Y.A. Alpha-latrotoxin receptor, latrophilin, is a novel member of the secretin family of G protein-coupled receptors. J. Biol. Chem. 272 (1997) 21504-21508
23. Li A., Tian X., Sung S.W., and Somlo S. Identification of two novel polycystic kidney disease-1-like genes in human and mouse genomes. Genomics 81 (2003) 596-608
24. Matsumoto N., Ribaudo R.K., Abastado J.P., Margulies D.H., and Yokoyama W.M. The lectin-like NK cell receptor Ly-49A recognizes a carbohydrate-independent epitope on its MHC class I ligand. Immunity 8 (1998) 245-254
25. Matsushita H., Lelianova V.G., and Ushkaryov Y.A. The latrophilin family: multiply spliced G protein-coupled receptors with differential tissue distribution. FEBS Lett. 443 (1999) 348-352
26. Mee C.J., Tomlinson S.R., Perestenko P.V., De Pomerai D., Duce I.R., Usherwood P.N., and Bell D.R. Latrophilin is required for toxicity of black widow spider venom in Caenorhabditis elegans. Biochem. J. 378 (2004) 185-191
27. Olin A.I., Morgelin M., Sasaki T., Timpl R., Heinegard D., and Aspberg A. The proteoglycans aggrecan and Versican form networks with fibulin-2 through their lectin domain binding. J. Biol. Chem. 276 (2001) 1253-1261
28. Ozeki Y., Matsui T., Suzuki M., and Titani K. Amino acid sequence and molecular characterization of a D-galactoside-specific lectin purified from sea urchin (Anthocidaris crassispina) eggs. Biochemistry 30 (1991) 2391-2394
29. Perrin M.H., Sutton S., Bain D.L., Berggren W.T., and Vale W.W. The first extracellular domain of corticotropin releasing factor-R1 contains major binding determinants for urocortin and astressin. Endocrinology 139 (1998) 566-570
30. Schwarz F.P., Puri K.D., Bhat R.G., and Surolia A. Thermodynamics of monosaccharide binding to concanavalin A, pea (Pisum sativum) lectin, and lentil (Lens culinaris) lectin. J. Biol. Chem. 268 (1993) 7668-7677
31. Schwieters C.D., Kuszewski J.J., Tjandra N., and Marius Clore G. The Xplor-NIH NMR molecular structure determination package. J. Magn. Reson. 160 (2003) 65-73
32. Sharon N. Lectins: carbohydrate-specific reagents and biological recognition molecules. J. Biol. Chem. 282 (2007) 2753-2764
33. Snyder D.A., Rivers A.M., Yokoe H., Menco B.P., and Anholt R.R. Olfactomedin: purification, characterization, and localization of a novel olfactory glycoprotein. Biochemistry 30 (1991) 9143-9153
34. Surolia A., Sharon N., and Schwarz F.P. Thermodynamics of monosaccharide and disaccharide binding to Erythrina corallodendron lectin. J. Biol. Chem. 271 (1996) 17697-17703
35. Tateno H., Saneyoshi A., Ogawa T., Muramoto K., Kamiya H., and Saneyoshi M. Isolation and characterization of rhamnose-binding lectins from eggs of steelhead trout (Oncorhynchus mykiss) homologous to low density lipoprotein receptor superfamily. J. Biol. Chem. 273 (1998) 19190-19197
36. Tateno H., Ogawa T., Muramoto K., Kamiya H., and Saneyoshi M. Rhamnose-binding lectins from steelhead trout (Oncorhynchus mykiss) eggs recognize bacterial lipopolysaccharides and lipoteichoic acid. Biosci. Biotechnol. Biochem. 66 (2002) 604-612
37. Terada T., Watanabe Y., Tateno H., Naganuma T., Ogawa T., Muramoto K., and Kamiya H. Structural characterization of a rhamnose-binding glycoprotein (lectin) from Spanish mackerel (Scomberomorous niphonius) eggs. Biochim. Biophys. Acta 1770 (2007) 617-629
38. Tymiak A.A., Norman J.A., Bolgar M., DiDonato G.C., Lee H., Parker W.L., Lo L.C., Berova N., Nakanishi K., Haber E., et al. Physicochemical characterization of a ouabain isomer isolated from bovine hypothalamus. Proc. Natl. Acad. Sci. USA 90 (1993) 8189-8193
39. Vakonakis I., Staunton D., Rooney L.M., and Campbell I.D. Interdomain association in fibronectin: insight into cryptic sites and fibrillogenesis. EMBO J. 26 (2007) 2575-2583
40. Willson J., Amliwala K., Davis A., Cook A., Cuttle M.F., Kriek N., Hopper N.A., O'Connor V., Harder A., Walker R.J., et al. Latrotoxin receptor signaling engages the UNC-13-dependent vesicle-priming pathway in C. elegans. Curr. Biol. 14 (2004) 1374-1379
41. Zelensky A.N., and Gready J.E. The C-type lectin-like domain superfamily. FEBS J. 272 (2005) 6179-6217