메뉴 건너뛰기




Volumn 16, Issue 6, 2008, Pages 842-851

The Structure of a Two-Disulfide Intermediate Assists in Elucidating the Oxidative Folding Pathway of a Cyclic Cystine Knot Protein

Author keywords

PROTEINS

Indexed keywords

DISULFIDE; VEGETABLE PROTEIN;

EID: 44649153789     PISSN: 09692126     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.str.2008.02.023     Document Type: Article
Times cited : (32)

References (49)
  • 1
    • 0015859467 scopus 로고
    • Principles that govern the folding of protein chains
    • Anfinsen C.B. Principles that govern the folding of protein chains. Science 181 (1973) 223-230
    • (1973) Science , vol.181 , pp. 223-230
    • Anfinsen, C.B.1
  • 2
    • 23444442371 scopus 로고    scopus 로고
    • NMR structural characterization and computational predictions of the major intermediate in oxidative folding of leech carboxypeptidase inhibitor
    • Arolas J.L., D'Silva L., Popowicz G.M., Aviles F.X., Holak T.A., and Ventura S. NMR structural characterization and computational predictions of the major intermediate in oxidative folding of leech carboxypeptidase inhibitor. Structure 13 (2005) 1193-1202
    • (2005) Structure , vol.13 , pp. 1193-1202
    • Arolas, J.L.1    D'Silva, L.2    Popowicz, G.M.3    Aviles, F.X.4    Holak, T.A.5    Ventura, S.6
  • 3
    • 24644503006 scopus 로고    scopus 로고
    • Study of a major intermediate in the oxidative folding of leech carboxypeptidase inhibitor: contribution of the fourth disulfide bond
    • Arolas J.L., Popowicz G.M., Bronsoms S., Aviles F.X., Huber R., Holak T.A., and Ventura S. Study of a major intermediate in the oxidative folding of leech carboxypeptidase inhibitor: contribution of the fourth disulfide bond. J. Mol. Biol. 352 (2005) 961-975
    • (2005) J. Mol. Biol. , vol.352 , pp. 961-975
    • Arolas, J.L.1    Popowicz, G.M.2    Bronsoms, S.3    Aviles, F.X.4    Huber, R.5    Holak, T.A.6    Ventura, S.7
  • 4
    • 33646350007 scopus 로고    scopus 로고
    • Folding of small disulfide-rich proteins: clarifying the puzzle
    • Arolas J.L., Aviles F.X., Chang J.Y., and Ventura S. Folding of small disulfide-rich proteins: clarifying the puzzle. Trends Biochem. Sci. 31 (2006) 292-301
    • (2006) Trends Biochem. Sci. , vol.31 , pp. 292-301
    • Arolas, J.L.1    Aviles, F.X.2    Chang, J.Y.3    Ventura, S.4
  • 7
    • 0001498695 scopus 로고    scopus 로고
    • Crystal structure of the disulfide bond-deficient azurin mutant C3A/C26A: how important is the S-S bond for folding and stability?
    • Bonander N., Leckner J., Guo H., Karlsson B.G., and Sjolin L. Crystal structure of the disulfide bond-deficient azurin mutant C3A/C26A: how important is the S-S bond for folding and stability?. Eur. J. Biochem. 267 (2000) 4511-4519
    • (2000) Eur. J. Biochem. , vol.267 , pp. 4511-4519
    • Bonander, N.1    Leckner, J.2    Guo, H.3    Karlsson, B.G.4    Sjolin, L.5
  • 8
    • 0031569392 scopus 로고    scopus 로고
    • New applications of simulated annealing in X-ray crystallography and solution NMR
    • Brünger A.T., Adams P.D., and Rice L.M. New applications of simulated annealing in X-ray crystallography and solution NMR. Structure 5 (1997) 325-336
    • (1997) Structure , vol.5 , pp. 325-336
    • Brünger, A.T.1    Adams, P.D.2    Rice, L.M.3
  • 10
    • 1942533409 scopus 로고    scopus 로고
    • Oxidative folding of Amaranthus α-amylase inhibitor: disulfide bond formation and conformational folding
    • Cemazar M., Zahariev S., Pongor S., and Hore P.J. Oxidative folding of Amaranthus α-amylase inhibitor: disulfide bond formation and conformational folding. J. Biol. Chem. 279 (2004) 16697-16705
    • (2004) J. Biol. Chem. , vol.279 , pp. 16697-16705
    • Cemazar, M.1    Zahariev, S.2    Pongor, S.3    Hore, P.J.4
  • 11
    • 33646340694 scopus 로고    scopus 로고
    • Knots in rings. The circular knotted protein Momordica cochinchinensis trypsin inhibitor-II folds via a stable two-disulfide intermediate
    • Cemazar M., Daly N.L., Haggblad S., Lo K.P., Yulyaningsih E., and Craik D.J. Knots in rings. The circular knotted protein Momordica cochinchinensis trypsin inhibitor-II folds via a stable two-disulfide intermediate. J. Biol. Chem. 281 (2006) 8224-8232
    • (2006) J. Biol. Chem. , vol.281 , pp. 8224-8232
    • Cemazar, M.1    Daly, N.L.2    Haggblad, S.3    Lo, K.P.4    Yulyaningsih, E.5    Craik, D.J.6
  • 13
    • 2442715239 scopus 로고    scopus 로고
    • Thermal, chemical, and enzymatic stability of the cyclotide kalata B1: the importance of the cyclic cystine knot
    • Colgrave M.L., and Craik D.J. Thermal, chemical, and enzymatic stability of the cyclotide kalata B1: the importance of the cyclic cystine knot. Biochemistry 43 (2004) 5965-5975
    • (2004) Biochemistry , vol.43 , pp. 5965-5975
    • Colgrave, M.L.1    Craik, D.J.2
  • 14
    • 33645077862 scopus 로고    scopus 로고
    • Chemistry. Seamless proteins tie up their loose ends
    • Craik D.J. Chemistry. Seamless proteins tie up their loose ends. Science 311 (2006) 1563-1564
    • (2006) Science , vol.311 , pp. 1563-1564
    • Craik, D.J.1
  • 15
    • 14844315799 scopus 로고    scopus 로고
    • Oxidative folding of the cystine knot motif in cyclotide proteins
    • Craik D.J., and Daly N.L. Oxidative folding of the cystine knot motif in cyclotide proteins. Protein Pept. Lett. 12 (2005) 147-152
    • (2005) Protein Pept. Lett. , vol.12 , pp. 147-152
    • Craik, D.J.1    Daly, N.L.2
  • 16
    • 0033579483 scopus 로고    scopus 로고
    • Plant cyclotides: a unique family of cyclic and knotted proteins that defines the cyclic cystine knot structural motif
    • Craik D.J., Daly N.L., Bond T., and Waine C. Plant cyclotides: a unique family of cyclic and knotted proteins that defines the cyclic cystine knot structural motif. J. Mol. Biol. 294 (1999) 1327-1336
    • (1999) J. Mol. Biol. , vol.294 , pp. 1327-1336
    • Craik, D.J.1    Daly, N.L.2    Bond, T.3    Waine, C.4
  • 17
    • 0035239222 scopus 로고    scopus 로고
    • The cystine knot motif in toxins and implications for drug design
    • Craik D.J., Daly N.L., and Waine C. The cystine knot motif in toxins and implications for drug design. Toxicon 39 (2001) 43-60
    • (2001) Toxicon , vol.39 , pp. 43-60
    • Craik, D.J.1    Daly, N.L.2    Waine, C.3
  • 19
    • 33645028340 scopus 로고    scopus 로고
    • The cyclotides and related macrocyclic peptides as scaffolds in drug design
    • Craik D.J., Cemazar M., and Daly N.L. The cyclotides and related macrocyclic peptides as scaffolds in drug design. Curr. Opin. Drug Discov. Devel. 9 (2006) 251-260
    • (2006) Curr. Opin. Drug Discov. Devel. , vol.9 , pp. 251-260
    • Craik, D.J.1    Cemazar, M.2    Daly, N.L.3
  • 20
    • 33646248365 scopus 로고    scopus 로고
    • The cyclotide family of circular miniproteins: nature's combinatorial peptide template
    • Craik D.J., Cemazar M., Wang C.K., and Daly N.L. The cyclotide family of circular miniproteins: nature's combinatorial peptide template. Biopolymers 84 (2006) 250-266
    • (2006) Biopolymers , vol.84 , pp. 250-266
    • Craik, D.J.1    Cemazar, M.2    Wang, C.K.3    Daly, N.L.4
  • 21
    • 0016292061 scopus 로고
    • Intermediates in the refolding of reduced pancreatic trypsin inhibitor
    • Creighton T. Intermediates in the refolding of reduced pancreatic trypsin inhibitor. J. Mol. Biol. 87 (1974) 579-602
    • (1974) J. Mol. Biol. , vol.87 , pp. 579-602
    • Creighton, T.1
  • 22
    • 0037458652 scopus 로고    scopus 로고
    • Disulfide folding pathways of cystine knot proteins. Tying the knot within the circular backbone of the cyclotides
    • Daly N.L., Clark R.J., and Craik D.J. Disulfide folding pathways of cystine knot proteins. Tying the knot within the circular backbone of the cyclotides. J. Biol. Chem. 278 (2003) 6314-6322
    • (2003) J. Biol. Chem. , vol.278 , pp. 6314-6322
    • Daly, N.L.1    Clark, R.J.2    Craik, D.J.3
  • 23
    • 0035933743 scopus 로고    scopus 로고
    • Circular proteins in plants: solution structure of a novel macrocyclic trypsin inhibitor from Momordica cochinchinensis
    • Felizmenio-Quimio M.E., Daly N.L., and Craik D.J. Circular proteins in plants: solution structure of a novel macrocyclic trypsin inhibitor from Momordica cochinchinensis. J. Biol. Chem. 276 (2001) 22875-22882
    • (2001) J. Biol. Chem. , vol.276 , pp. 22875-22882
    • Felizmenio-Quimio, M.E.1    Daly, N.L.2    Craik, D.J.3
  • 24
    • 4444359659 scopus 로고    scopus 로고
    • Novel strategies for isolation and characterization of cyclotides: the discovery of bioactive macrocyclic plant polypeptides in the Violaceae
    • Goransson U., Svangard E., Claeson P., and Bohlin L. Novel strategies for isolation and characterization of cyclotides: the discovery of bioactive macrocyclic plant polypeptides in the Violaceae. Curr. Protein Pept. Sci. 5 (2004) 317-329
    • (2004) Curr. Protein Pept. Sci. , vol.5 , pp. 317-329
    • Goransson, U.1    Svangard, E.2    Claeson, P.3    Bohlin, L.4
  • 25
    • 0031576336 scopus 로고    scopus 로고
    • Torsion angle dynamics for NMR structure calculation with the new program DYANA
    • Guntert P., Mumenthaler C., and Wüthrich K. Torsion angle dynamics for NMR structure calculation with the new program DYANA. J. Mol. Biol. 273 (1997) 283-298
    • (1997) J. Mol. Biol. , vol.273 , pp. 283-298
    • Guntert, P.1    Mumenthaler, C.2    Wüthrich, K.3
  • 27
    • 0028866361 scopus 로고
    • Folding of the squash trypsin inhibitor EETI II. Evidence of native and non-native local structural preferences in a linear analogue
    • Heitz A., Chiche L., Le-Nguyen D., and Castro B. Folding of the squash trypsin inhibitor EETI II. Evidence of native and non-native local structural preferences in a linear analogue. Eur. J. Biochem. 233 (1995) 837-846
    • (1995) Eur. J. Biochem. , vol.233 , pp. 837-846
    • Heitz, A.1    Chiche, L.2    Le-Nguyen, D.3    Castro, B.4
  • 30
    • 0030039296 scopus 로고    scopus 로고
    • PROMOTIF-a program to identify and analyze structural motifs in proteins
    • Hutchinson E.G., and Thornton J.M. PROMOTIF-a program to identify and analyze structural motifs in proteins. Protein Sci. 5 (1996) 212-220
    • (1996) Protein Sci. , vol.5 , pp. 212-220
    • Hutchinson, E.G.1    Thornton, J.M.2
  • 31
    • 0030708903 scopus 로고    scopus 로고
    • Structural characterization of an analog of the major rate-determining disulfide folding intermediate of bovine pancreatic ribonuclease A
    • Laity J.H., Lester C.C., Shimotakahara S., Zimmerman D.E., Montelione G.T., and Scheraga H.A. Structural characterization of an analog of the major rate-determining disulfide folding intermediate of bovine pancreatic ribonuclease A. Biochemistry 36 (1997) 12683-12699
    • (1997) Biochemistry , vol.36 , pp. 12683-12699
    • Laity, J.H.1    Lester, C.C.2    Shimotakahara, S.3    Zimmerman, D.E.4    Montelione, G.T.5    Scheraga, H.A.6
  • 32
    • 0030339738 scopus 로고    scopus 로고
    • AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR
    • Laskowski R.A., Rullmannn J.A., MacArthur M.W., Kaptein R., and Thornton J.M. AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR. J. Biomol. NMR 8 (1996) 477-486
    • (1996) J. Biomol. NMR , vol.8 , pp. 477-486
    • Laskowski, R.A.1    Rullmannn, J.A.2    MacArthur, M.W.3    Kaptein, R.4    Thornton, J.M.5
  • 33
    • 0027512113 scopus 로고
    • Characterization and 2D NMR study of the stable [9-21, 15-27] 2 disulfide intermediate in the folding of the 3 disulfide trypsin inhibitor EETI II
    • Le-Nguyen D., Heitz A., Chiche L., El Hajji M., and Castro B. Characterization and 2D NMR study of the stable [9-21, 15-27] 2 disulfide intermediate in the folding of the 3 disulfide trypsin inhibitor EETI II. Protein Sci. 2 (1993) 165-174
    • (1993) Protein Sci. , vol.2 , pp. 165-174
    • Le-Nguyen, D.1    Heitz, A.2    Chiche, L.3    El Hajji, M.4    Castro, B.5
  • 34
    • 0033064496 scopus 로고    scopus 로고
    • Influence of non-bonded parameters on the quality of NMR structures: a new force field for NMR structure calculation
    • Linge J.P., and Nilges M. Influence of non-bonded parameters on the quality of NMR structures: a new force field for NMR structure calculation. J. Biomol. NMR 13 (1999) 51-59
    • (1999) J. Biomol. NMR , vol.13 , pp. 51-59
    • Linge, J.P.1    Nilges, M.2
  • 35
    • 33750460621 scopus 로고    scopus 로고
    • Cyclic MrIA: a stable and potent cyclic conotoxin with a novel topological fold that targets the norepinephrine transporter
    • Lovelace E.S., Armishaw C.J., Colgrave M.L., Wahlstrom M.E., Alewood P.F., Daly N.L., and Craik D.J. Cyclic MrIA: a stable and potent cyclic conotoxin with a novel topological fold that targets the norepinephrine transporter. J. Med. Chem. 49 (2006) 6561-6568
    • (2006) J. Med. Chem. , vol.49 , pp. 6561-6568
    • Lovelace, E.S.1    Armishaw, C.J.2    Colgrave, M.L.3    Wahlstrom, M.E.4    Alewood, P.F.5    Daly, N.L.6    Craik, D.J.7
  • 36
    • 0027177107 scopus 로고
    • Oxidative refolding of insulin-like growth factor 1 yields two products of similar thermodynamic stability: a bifurcating protein-folding pathway
    • Miller J.A., Narhi L.O., Hua Q.X., Rosenfeld R., Arakawa T., Rohde M., Prestrelski S., Lauren S., Stoney K.S., and Tsai L. Oxidative refolding of insulin-like growth factor 1 yields two products of similar thermodynamic stability: a bifurcating protein-folding pathway. Biochemistry 32 (1993) 5203-5213
    • (1993) Biochemistry , vol.32 , pp. 5203-5213
    • Miller, J.A.1    Narhi, L.O.2    Hua, Q.X.3    Rosenfeld, R.4    Arakawa, T.5    Rohde, M.6    Prestrelski, S.7    Lauren, S.8    Stoney, K.S.9    Tsai, L.10
  • 37
    • 4444282928 scopus 로고    scopus 로고
    • A biomolecular force field based on the free enthalpy of hydration and solvation: the GROMOS force-field parameter sets 53A5 and 53A6
    • Oostenbrink C., Villa A., Mark A.E., and van Gunsteren W.F. A biomolecular force field based on the free enthalpy of hydration and solvation: the GROMOS force-field parameter sets 53A5 and 53A6. J. Comput. Chem. 25 (2004) 1656-1676
    • (2004) J. Comput. Chem. , vol.25 , pp. 1656-1676
    • Oostenbrink, C.1    Villa, A.2    Mark, A.E.3    van Gunsteren, W.F.4
  • 38
    • 0028090517 scopus 로고
    • A common structural motif incorporating a cystine knot and a triple-stranded β-sheet in toxic and inhibitory polypeptides
    • Pallaghy P.K., Nielsen K.J., Craik D.J., and Norton R.S. A common structural motif incorporating a cystine knot and a triple-stranded β-sheet in toxic and inhibitory polypeptides. Protein Sci. 3 (1994) 1833-1839
    • (1994) Protein Sci. , vol.3 , pp. 1833-1839
    • Pallaghy, P.K.1    Nielsen, K.J.2    Craik, D.J.3    Norton, R.S.4
  • 39
    • 0031808084 scopus 로고    scopus 로고
    • Crystal structures of two mutants that have implications for the folding of bovine pancreatic ribonuclease A
    • Pearson M.A., Karplus P.A., Dodge R.W., Laity J.H., and Scheraga H.A. Crystal structures of two mutants that have implications for the folding of bovine pancreatic ribonuclease A. Protein Sci. 7 (1998) 1255-1258
    • (1998) Protein Sci. , vol.7 , pp. 1255-1258
    • Pearson, M.A.1    Karplus, P.A.2    Dodge, R.W.3    Laity, J.H.4    Scheraga, H.A.5
  • 40
    • 0028070557 scopus 로고
    • Torsion angle dynamics: reduced variable conformational sampling enhances crystallographic structure refinement
    • Rice L.M., and Brünger A.T. Torsion angle dynamics: reduced variable conformational sampling enhances crystallographic structure refinement. Proteins 19 (1994) 277-290
    • (1994) Proteins , vol.19 , pp. 277-290
    • Rice, L.M.1    Brünger, A.T.2
  • 41
    • 0037424506 scopus 로고    scopus 로고
    • Twists, knots, and rings in proteins. Structural definition of the cyclotide framework
    • Rosengren K.J., Daly N.L., Plan M.R., Waine C., and Craik D.J. Twists, knots, and rings in proteins. Structural definition of the cyclotide framework. J. Biol. Chem. 278 (2003) 8606-8616
    • (2003) J. Biol. Chem. , vol.278 , pp. 8606-8616
    • Rosengren, K.J.1    Daly, N.L.2    Plan, M.R.3    Waine, C.4    Craik, D.J.5
  • 42
    • 0034809784 scopus 로고    scopus 로고
    • Bovine pancreatic ribonuclease A: oxidative and conformational folding studies
    • Scheraga H.A., Wedemeyer W.J., and Welker E. Bovine pancreatic ribonuclease A: oxidative and conformational folding studies. Methods Enzymol. 341 (2001) 189-221
    • (2001) Methods Enzymol. , vol.341 , pp. 189-221
    • Scheraga, H.A.1    Wedemeyer, W.J.2    Welker, E.3
  • 45
    • 0026543422 scopus 로고
    • Complete folding of bovine pancreatic trypsin inhibitor with only a single disulfide bond
    • Staley J.P., and Kim P.S. Complete folding of bovine pancreatic trypsin inhibitor with only a single disulfide bond. Proc. Natl. Acad. Sci. USA 89 (1992) 1519-1523
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 1519-1523
    • Staley, J.P.1    Kim, P.S.2
  • 46
    • 0030621858 scopus 로고    scopus 로고
    • Torsion-angle molecular dynamics as a new efficient tool for NMR structure calculation
    • Stein E.G., Rice L.M., and Brünger A.T. Torsion-angle molecular dynamics as a new efficient tool for NMR structure calculation. J. Magn. Reson. 124 (1997) 154-164
    • (1997) J. Magn. Reson. , vol.124 , pp. 154-164
    • Stein, E.G.1    Rice, L.M.2    Brünger, A.T.3
  • 47
    • 0032765075 scopus 로고    scopus 로고
    • Characterisation of the dominant oxidative folding intermediate of hen lysozyme
    • van den Berg B., Chung E.W., Robinson C.V., and Dobson C.M. Characterisation of the dominant oxidative folding intermediate of hen lysozyme. J. Mol. Biol. 290 (1999) 781-796
    • (1999) J. Mol. Biol. , vol.290 , pp. 781-796
    • van den Berg, B.1    Chung, E.W.2    Robinson, C.V.3    Dobson, C.M.4
  • 49
    • 0025949415 scopus 로고
    • Reexamination of the folding of BPTI: predominance of native intermediates
    • Weissman J.S., and Kim P.S. Reexamination of the folding of BPTI: predominance of native intermediates. Science 253 (1991) 1386-1393
    • (1991) Science , vol.253 , pp. 1386-1393
    • Weissman, J.S.1    Kim, P.S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.