TrMADS3, a new MADS-box gene, from a perennial species Taihangia rupestris (Rosaceae) is upregulated by cold and experiences seasonal fluctuation in expression level

Development Genes and Evolution

Volumn 218, Issue 6, 2008, Pages 281-292

  Du, Xiaoqiu ^a,b   Xiao, Qiying ^a,b   Zhao, Ran ^a,b   Wu, Feng ^a   Xu, Qijiang ^a   Chong, Kang ^a   Meng, Zheng ^a  

^a INSTITUTE OF BOTANY   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

Author keywords

FLOWERING LOCUS C; MADS box; Overwintering; Perennial; Taihangia

Indexed keywords

DNA HOMOLOG; MADS DOMAIN PROTEIN; MADS DOMAIN PROTEIN TRMADS3; MANNITOL; SODIUM CHLORIDE;

ARABIDOPSIS; ARTICLE; GENE EXPRESSION; GENE EXPRESSION REGULATION; GENE ISOLATION; GENETIC TRANSCRIPTION; GENOMIC IN SITU HYBRIDIZATION; GERMINATION; MERISTEM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT GENETICS; PLANT LEAF; PLANT REPRODUCTION; PLANT ROOT; PRIORITY JOURNAL; ROSACEAE; SEASONAL VARIATION; TAIHANGIA RUPESTRIS; WINTER;

ACCLIMATIZATION; AMINO ACID SEQUENCE; CLONING, MOLECULAR; COLD TEMPERATURE; GENE EXPRESSION REGULATION, PLANT; MADS DOMAIN PROTEINS; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT PROTEINS; ROSACEAE; SEASONS; SEQUENCE HOMOLOGY, AMINO ACID; TISSUE DISTRIBUTION;

ARABIDOPSIS; ROSACEAE; TAIHANGIA; TAIHANGIA RUPESTRIS;

EID: 44649124787     PISSN: 0949944X     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00427-008-0218-z     Document Type: Article

References (54)

1. Amasino R (2004) Vernalization, competence, and the epigenetic memory of winter. Plant Cell 16:2553-2559
2. Ausín I, Alonso-Blanco C, Martínez-Zapater J-M (2005) Environmental regulation of flowering Int. J. Dev Biol 49:689-705
3. Battey NH (2000) Aspects of seasonality. J Exp Bot 51:1769-1780
4. Becker A, Theissen G (2003) The major clades of MADS-box genes and their role in the development and evolution of flowering plants. Mol Phylogenet Evol 29:464-489
5. Brunel N, Leduc N, Poupard P, Simoneau P, Mauget J-C, Viemont J-D (2002) KNAP2, a class I KN1-like gene is a negative marker of bud growth potential in apple trees (Malus domestica [L.] Borkh.). J Exp Bot 53:2143-2149
6. Chen K, Coleman G (2006) TypeII MADS-box genes associated with poplar apical bud development and dormancy. Abstract presented at the American society of Plant Biologists Meeting, Boston MA, USA 5-9 August 2006 (http://abstracts.aspb.org/pb2006/public/P03/P03015.html)
7. Chouard P (1960) Vernalization and its relations to dormancy. Annu Rev Plant Physiol 11:191-238
8. Clough SJ, Bent AF (1998) Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J 16:735-743
9. Depledge DP, Dalby AR (2005) COPASAAR - a database for proteomic analysis of single amino acid repeats. BMC Bioinformatics 6:196
10. Faivre-Rampant O, Cardle L, Marshall D, Viola R, Taylor MA (2004) Changes in gene expression during meristem activation processes in Solanum tuberosum with a focus on the regulation of an auxin response factor gene. J Exp Bot 55:613-622
11. Frohman MA, Dush MK, Martin GR (1988) Rapid production of full-length cDNAs from rare transcripts: Amplification using a single gene-specific oligonucleotide primer. Proc Natl Acad Sci U S A 85:8998-9002
12. Golding GB (1999) Simple sequence is abundant in eukaryotic proteins. Protein Sci 8:1358-1361
13. Griffith M, Yaish MW (2004) Antifreeze proteins in overwintering plants: a tale of two activities. Trends Plant Sci 9:399-405
14. Guindon S, Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52:696-704
15. Heggie L, Halliday KJ (2005) The highs and lows of plant life: temperature and light interactions in development. Int J Dev Biol 49:675-687
16. Heide OM (1974) Growth and dormancy in Norway spruce ecotypes. I. Interaction of photoperiod and temperature. Physiol Plant 30:1-12
17. Irish VF, Litt A (2005) Flower development and evolution: Gene duplication, diversification and redeployment. Curr Opin Genet Dev 15:454-460
18. Jones DT, Taylor WR, Thornton JM (1992) The rapid generation of mutation data matrices from protein sequences. Comput Appl Biosci 8:275-282
19. Karlin S, Brocchieri L, Bergman A, Mrazek J, Gentles AJ (2002) Amino acid runs in eukaryotic proteomes and disease associations. Proc Natl Acad Sci U S A 99:333-338
20. Katti MV, Sami-Subbu R, Ranjekar PK, Gupta VS (2000) Amino acid repeat patterns in protein sequences: Their diversity and structural-functional implications. Protein Sci 9:1203-1209
21. Kumar S, Tamura K, Nei M (2004) MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5:150-163
22. Leseberg CH, Li A, Kang H, Duvall M, Mao L (2006) Genome-wide analysis of the MADS-box gene family in Populus trichocarpa. Gene 378:84-94
23. Li GS, Meng Z, Kong HZ, Chen ZD, Theissen G, Lu AM (2005) Characterization of candidate class A, B and E floral homeotic genes from the perianthless basal angiosperm Chloranthus spicatus (Chloranthaceae). Dev Genes Evol 215:437-449
24. Lin SI, Wang JG, Poon SY, Su CL, Wang SS, Chiou TJ (2005) Differential regulation of FLOWERING LOCUS C expression by vernalization in cabbage and Arabidopsis. Plant Physiol 137:1037-1048
25. Liu J, Zhu JK (1997) An arabidopsis mutant that requires increased calcium for potassium nutrition and salt tolerance. Proc Natl Acad Sci U S A 94:14960-14964
26. Lona F (1968) Intra-reproductive vernalization in Soldanella minima. Planta 82:145-152
27. L̈ S, Du X, Lu W, Chong K, Meng Z (2007) Two AGAMOUS-like MADS-box genes from Taihangia rupestris (Rosaceae) reveal independent trajectories in the evolution of class C and class D floral homeotic functions. Evol Dev 9:92-104
28. Martinez-Castilla L, Alvarez-Buylla E (2003) Adaptive evolution in the Arabidopsis MADS-box gene family inferred from its complete resolved phylogeny. Proc Natl Acad Sci U S A 100:13407-13412
29. Mazzitelli L, Hancock RD, Haupt S, Walker PG, Pont SD, McNicol J, Cardle L, Morris J, Viola R, Brennan R, Hedley PE, Taylor MA (2007) Coordinated gene expression during phases of dormancy release in raspberry (Rubus idaeus L.) buds. J Exp Bot 58:1035-1045
30. McKay JK, Richards JH, Mitchell-Olds T (2003) Genetics of drought adaptation in Arabidopsis thaliana: I. Pleiotropy contributes to genetic correlations among ecological traits. Mol Ecol 12:1137-1151
31. Mendoza I, Rubio F, Rodriguez-Navarro A, Pardo JM (1994) The protein phosphatase calcineurin is essential for NaCl tolerance of Saccharomyces cerevisiae. J Biol Chem 269:8792-8796
32. Michaels SD, Amasino RM (1999) FLOWERING LOCUS C encodes a novel MADS domain protein that acts as a repressor of flowering. Plant Cell 11:949-956
33. Mouradov A, Cremer F, Coupland G (2002) Control of flowering time: interacting pathways as a basis for diversity. Plant Cell 14(Suppl):S111-130
34. Murashige T, Skoog F (1962) A revised medium for rapid growth and bio-assays with tobacco tissue culture. Plant Physiol 15:473-497
35. Perry T (1971) Dormancy of trees in winter. Science 171:29-36
36. Ratcliffe OJ, Nadzan GC, Reuber TL, Riechmann JL (2001) Regulation of flowering in Arabidopsis by an FLC homologue. Plant Physiol 126:122-132
37. Ratcliffe OJ, Kumimoto RW, Wong BJ, Riechmann JL (2003) Analysis of the Arabidopsis MADS AFFECTING FLOWERING gene family: MAF2 prevents vernalization by short periods of cold. Plant Cell 15:1159-1169
38. Reeves PA, He Y, Schmitz RJ, Amasino RM, Panella LW, Richards CM (2007) Evolutionary conservation of the FLC mediated vernalization response: evidence from the sugar beet (Beta vulgaris). Genetics 176:295-307
39. Rohde A, Bhalerao RP (2007) Plant dormancy in the perennial context. Trends Plant Sci 12:217-223
40. Rorat T (2006) Plant dehydrins - tissue location, structure and function. Cell Mol Biol Lett 11:536-556
41. Schmitz RJ, Amasino RM (2007) Vernalization: A model for investigating epigenetics and eukaryotic gene regulation in plants. Biochim Biophys Acta 1769:269-275
42. Schrader J, Moyle R, Bhalerao R, Hertzberg M, Lundeberg J, Nilsson P, Bhalerao RP (2004) Cambial meristem dormancy in trees involves extensive remodelling of the transcriptome. Plant J 40:173-187
43. Schranz ME, Quijada P, Sung SB, Lukens L, Amasino R, Osborn TC (2002) Characterization and effects of the replicated flowering time gene FLC in Brassica rapa. Genetics 162:1457-1468
44. Scortecci KC, Michaels SD, Amasino RM (2001) Identification of a MADS-box gene, FLOWERING LOCUS M, that represses flowering. Plant J 26:229-236
45. Sheldon CC, Burn JE, Perez PP, Metzger J, Edwards JA, Peacock WJ, Dennis ES (1999) The FLF MADS box gene: A repressor of flowering in Arabidopsis regulated by vernalization and methylation. Plant Cell 11:445-458
46. Sheldon CC, Rouse DT, Finnegan EJ, Peacock WJ, Dennis ES (2000) The molecular basis of vernalization: The central role of FLOWERING LOCUS C (FLC). Proc Natl Acad Sci U S A 97:3753-3758
47. Shen SH, Lu WL, Wang FH (1994) Studies on the reproductive biology of Taihangia rapestris: I analysis on the habitat of T. repestris. Biodivers Sci 2:210-212
48. Tadege M, Sheldon CC, Helliwell CA, Stoutjesdijk P, Dennis ES, Peacock WJ (2001) Control of flowering time by FLC orthologues in Brassica napus. Plant J 28:545-553
49. Thomashow M (1998) Role of cold-responsive genes in plant freezing tolerance. Plant Physiol 118:1-8
50. Thompson J, Gibson T, Plewniak F, Jeanmougin F, Higgins D (1997) The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882
51. Vandenbussche M, Zethof J, Souer E, Koes R, Tornielli GB, Pezzotti M, Ferrario S, Angenent GC, Gerats T (2003) Toward the analysis of the petunia MADS box gene family by reverse and forward transposon insertion mutagenesis approaches: B, C, and D floral organ identity functions require SEPALLATA-like MADS box genes in petunia. Plant Cell 15:2680-2693
52. Welling A, Moritz T, Palva E, Junttila O (2002) Independent activation of cold acclimation by low temperature and short photoperiod in hybrid aspen. Plant Physiol 129:1633-1641
53. Wu SJ, Ding L, Zhu JK (1996) SOS1, a genetic locus essential for salt tolerance and potassium acquisition. Plant Cell 8:617-627
54. Yü T, Li C (1980) Taihangia - A new genus of Rosaceae from China. Acta Phytotax Sin 18:469-472