Quantifying dynamic resource allocation illuminates foraging strategy in Phanerochaete velutina

Fungal Genetics and Biology

Volumn 45, Issue 7, 2008, Pages 1111-1121

  Tlalka, M ^a   Bebber, D P ^a   Darrah, P R ^a   Watkinson, S C ^a   Fricker, M D ^a  

^a UNIVERSITY OF OXFORD   (United Kingdom)

Author keywords

Aminoisobutyrate; Amino acid transport; Fungal foraging behaviour; Phanerochaete velutina; Photon counting scintillation imaging; Resource allocation

Indexed keywords

CELLULOSE; GLASS FIBER;

AMINO ACID TRANSPORT; ARTICLE; FORAGING; FUNGAL COLONIZATION; FUNGAL DEVELOPMENT; FUNGUS GROWTH; NONHUMAN; NUTRIENT AVAILABILITY; PHANEROCHAETE; PHANEROCHAETE VELUTINA; PRIORITY JOURNAL; RESOURCE ALLOCATION;

BIOLOGICAL TRANSPORT; CARBON RADIOISOTOPES; GAMMA CAMERAS; HYPHAE; MODELS, BIOLOGICAL; MODELS, STATISTICAL; PHANEROCHAETE;

FUNGI; PHANEROCHAETE VELUTINA;

EID: 44649111832     PISSN: 10871845     EISSN: 10960937     Source Type: Journal    
DOI: 10.1016/j.fgb.2008.03.015     Document Type: Article

References (41)

1. Aro N., Pakula T., and Penttila M. Transcriptional regulation of plant cell wall degradation by filamentous fungi. FEMS Microbiol. Rev. 29 (2005) 719-739
2. Bahn Y.S., Xue C.Y., Idnurm A., Rutherford J.C., Heitman J., and Cardenas M.E. Sensing the environment: lessons from fungi. Nat. Rev. Microbiol. 5 (2007) 57-69
3. Boddy L. Saprotrophic cord-forming fungi: meeting the challenge of heterogeneous environments. Mycologia 91 (1999) 13-32
4. Boddy, L., Donnelly, D.P., 2008. Fractal geometry and microorganisms in the environment. In: Senesi, N., Wilkinson, K. (Eds.), Fractal Structures and Processes in the Environment. IUPAC.
5. Boddy, L., Jones, T.H., 2007. Mycelial responses in heterogeneous environments: parallels with macroorganisms. In: Fungi in the Environment. Cambridge University Press, pp 112-158.
6. Boddy L., Wells J.M., Culshaw C., and Donnelly D.P. Fractal analysis in studies of mycelium in soil. Geoderma 88 (1999) 301-328
7. Bolton R.G., and Boddy L. Characterization of the spatial-aspects of foraging mycelial cord systems using fractal geometry. Mycol. Res. 97 (1993) 762-768
8. Cairney J.W.G. Basidiomycete mycelia in forest soils: dimensions, dynamics and roles in nutrient distribution. Mycol. Res. 109 (2005) 7-20
9. Coggins C.R., Hornung U., Jennings D.H., and Veltkamp C.J. The phenomenon of point growth and its relation to flushing and strand formation in mycelium of Serpula lacrimans. Trans. Brit. Mycol. Soc. 75 (1980) 69-76
10. Darrah P.R., Tlalka M., Ashford A., Watkinson S.C., and Fricker M.D. The vacuole system is a significant intracellular pathway for longitudinal solute transport in basidiomycete fungi. Eukaryot. Cell 5 (2006) 1111-1125
11. Donnelly D.P., and Boddy L. Developmental and morphological responses of mycelial systems of Stropharia caerulea and Phanerochaete velutina to soil nutrient enrichment. New Phytol. 138 (1998) 519-531
12. Donnelly D.P., Wilkins M.F., and Boddy L. An integrated image-analysis approach for determining biomass, radial extent and box-count fractal dimension of macroscopic mycelial systems. Binary 7 (1995) 19-28
13. Dowson C.G., Rayner A.D.M., and Boddy L. Foraging patterns of Phallus impudicus, Phanerochaete laevis and Steccherinum fimbriatum between discontinuous resource units in soil. FEMS Microbiol. Ecol. 53 (1988) 291-298
14. Dowson C.G., Rayner A.D.M., and Boddy L. Inoculation of mycelial cord-forming Basidiomycetes into woodland soil and litter. 1. Initial establishment. New Phytol. 109 (1988) 335-341
15. Dowson C.G., Rayner A.D.M., and Boddy L. Inoculation of mycelial cord-forming Basidiomycetes into woodland soil and litter. 2. Resource capture and persistence. New Phytol. 109 (1988) 343-349
16. Fricker M.D., Bebber D.P., and Boddy L. Mycelial networks: structure and dynamics. In: Boddy L., Franklin J.C., and van West P. (Eds). Ecology of Saprotrophic Basidiomycetes (2008), Academic Press, Amsterdam
17. Fricker M.D., Tlalka M., Bebber D., Takagi S., Watkinson S.C., and Darrah P.R. Fourier-based spatial mapping of oscillatory phenomena in fungi. Fungal Genet. Biol. 44 (2007) 1077-1084
18. Harris M.J., and Boddy L. Nutrient movement and mycelial reorganization in established systems of Phanerochaete velutina, following arrival of colonized wood resources. Microb. Ecol. 50 (2005) 141-151
19. Lindahl B.J., Ouml Rn.D., and Olsson S. Fungal translocation-creating and responding to environmental heterogeneity. Mycologist 18 (2004) 79-88
20. Olsson S. Nutrient translocation and electrical signalling in mycelia. In: Gow N.A.R., Robson G.D., and Gadd G.M. (Eds). The fungal Colony (1999), Cambridge University Press, Cambridge 25-48
21. Olsson S. Colonial growth of fungi. In: Howard R.J., and Gow N.A.R. (Eds). Biology of the Fungal Cell (2001), Springer 125-141
22. Otsu N. Threshold selection method from gray-level histograms. IEEE Trans. Syst. Man Cybernet. 9 (1979) 62-66
23. Pinheiro J.C., and Bates D.M. Mixed-effects Models in S and S-Plus (2000), Springer, New York 528
24. Pizer S.M., Amburn E.P., Austin J.D., Cromartie R., Geselowitz A., Greer T., ter Haar Romeny B., Zimmerman J.B., and Zuiderveld K. Adaptive histogram equalization and its variations. Comput. Vis. Graph. Image Process. 39 (1987) 355-368
25. R Development Core Team, 2007. A language and environment for statistical computing. R foundation for statistical computing. Vienna, Austria.
26. Rayner A.D.M., and Coates D. Regulation of mycelial organisation and responses. In: Rayner A.D.M., Braisier C.M., and Moore D. (Eds). Evolutionary Biology of the Fungi (1987), Cambridge University Press, Cambridge 115-136
27. Rayner A.D.M., Griffith G.S., and Ainsworth A.M. Mycelial interconnectedness. In: Gow N.A.R., and Gadd G.M. (Eds). The Growing Fungus (1994), Chapman and Hall, London 21-40
28. Read N.D. Environmental sensing and the filamentous lifestyle. In: Gadd G.M., Watkinson S.C., and Dyer P.S. (Eds). Fungi in the Environment (2007), Cambridge University Press, Cambridge 38-57
29. Stenlid J., and Rayner A.D.M. Environmental and endogenous controls of developmental pathways - Variation and its significance in the forest pathogen, Heterobasidion annosum. New Phytol. 113 (1989) 245-258
30. Thrane C., Kaufmann U., Stummann B.M., and Olsson S. Activation of caspase-like activity and poly (ADP-ribose) polymerase degradation during sporulation in Aspergillus nidulans. Fungal Genet. Biol. 41 (2004) 361-368
31. Tlalka M., Bebber D., Darrah P.R., Watkinson S.C., and Fricker M.D. Emergence of self-organised oscillatory domains in fungal mycelia. Fungal Genet. Biol. 44 (2007) 1085-1095
32. Tlalka M., Bebber D.P., Darrah P.R., and Watkinson S.C. Mycelial networks: nutrient uptake, translocation and role in ecosystems. In: Boddy L., Frankland J.C., and West P.v. (Eds). Ecology of Saprotrophic Basidiomycetes (2008), Academic Press, Amsterdam 3-18
33. Tlalka M., Hensman D., Darrah P.R., Watkinson S.C., and Fricker M.D. Noncircadian oscillations in amino acid transport have complementary profiles in assimilatory and foraging hyphae of Phanerochaete velutina. New Phytol. 158 (2003) 325-335
34. Tlalka M., Watkinson S.C., Darrah P.R., and Fricker M.D. Continuous imaging of amino-acid translocation in intact mycelia of Phanerochaete velutina reveals rapid, pulsatile fluxes. New Phytol. 153 (2002) 173-184
35. Watkinson S.C. Inhibition of growth and development of Serpula lacrimans by the non-metabolized amino-acid analog alpha-aminoisobutyric-acid. FEMS Microbiol. Lett. 24 (1984) 247-250
36. Watkinson S.C. Metabolism and hyphal differentiation in large basidiomycete colonies. In: Gow N.A.R., Gadd G.M., and Robson G.J. (Eds). The Fungal Colony (1999), Cambridge University Press, Cambridge 127-157
37. Watkinson S.C., Bebber D., Darrah P.R., Fricker M.D., Tlalka M., and Boddy L. The role of wood decay fungi in the carbon and nitrogen dynamics of the forest floor. In: Gadd G.M. (Ed). Fungi in Biogeochemical Cycles (2006), Cambridge University Press, Cambridge 151-181
38. Wells J.M., Boddy L., and Donnelly D.P. Wood decay and phosphorus translocation by the cord-forming basidiomycete Phanerochaete velutina: the significance of local nutrient supply. New Phytol. 138 (1998) 607-617
39. Wells J.M., Donnelly D.P., and Boddy L. Patch formation and developmental polarity in mycelial cord systems of Phanerochaete velutina on a nutrient-depleted soil. New Phytol. 136 (1997) 653-665
40. Wells J.M., Harris M.J., and Boddy L. Encounter with new resources causes polarized growth of the cord-forming basidiomycete Phanerochaete velutina on soil. Microb. Ecol. 36 (1998) 372-382
41. Wipf D., Ludewig U., Tegeder M., Rentsch D., Koch W., and Frommer W.B. Conservation of amino acid transporters in fungi, plants and animals. Trends Biochem. Sci. 27 (2002) 139-147