메뉴 건너뛰기




Volumn 89, Issue 5, 2008, Pages 1202-1211

Analysis of the genome of Spodoptera frugiperda nucleopolyhedrovirus (SfMNPV-19) and of the high genomic heterogeneity in group II nucleopolyhedroviruses

Author keywords

[No Author keywords available]

Indexed keywords

CYSTEINE; GLYCINE; VIRUS DNA; VIRUS PROTEIN;

EID: 44649102897     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/vir.0.83581-0     Document Type: Article
Times cited : (43)

References (55)
  • 2
    • 0031575792 scopus 로고    scopus 로고
    • The sequence of the Orgyia pseudotsugata multinucleocapsid nuclear polyhedrosis virus genome
    • Ahrens, C. H., Russell, R. L., Funk, C. J., Evans, J. T., Harwood, S. H. & Rohrmann, G. F. (1997). The sequence of the Orgyia pseudotsugata multinucleocapsid nuclear polyhedrosis virus genome. Virology 229, 381-399.
    • (1997) Virology , vol.229 , pp. 381-399
    • Ahrens, C.H.1    Russell, R.L.2    Funk, C.J.3    Evans, J.T.4    Harwood, S.H.5    Rohrmann, G.F.6
  • 4
    • 0028086144 scopus 로고
    • The complete DNA sequence of Autographa californica nuclear polyhedrosis virus
    • Ayres, M. D., Howard, S. C, Kuzio, J., Lopez-Ferber, M. & Possee, R. D. (1994). The complete DNA sequence of Autographa californica nuclear polyhedrosis virus. Virology 202, 586-605.
    • (1994) Virology , vol.202 , pp. 586-605
    • Ayres, M.D.1    Howard, S.C.2    Kuzio, J.3    Lopez-Ferber, M.4    Possee, R.D.5
  • 5
    • 43049119763 scopus 로고    scopus 로고
    • Effect of Baculovirus spodoptera isolates in Spodoptera frugiperda (J. E. Smith) (Lepidoptera: Noctuidae) larvae and their characterization by RAPD
    • Barreto, M. E., Guimaraes, C. T., Teixeira, F. F., Paiva, E. & Valicente, F. H. (2005). Effect of Baculovirus spodoptera isolates in Spodoptera frugiperda (J. E. Smith) (Lepidoptera: Noctuidae) larvae and their characterization by RAPD. Neotrop Entomol 34, 67-75.
    • (2005) Neotrop Entomol , vol.34 , pp. 67-75
    • Barreto, M.E.1    Guimaraes, C.T.2    Teixeira, F.F.3    Paiva, E.4    Valicente, F.H.5
  • 6
    • 0032058503 scopus 로고    scopus 로고
    • Characterization of a nuclear polyhedrosis virus of Spodoptera frugiperda from Argentina
    • Berretta, M. F., Rios, M. L. & de Sciocco, C. A. (1998). Characterization of a nuclear polyhedrosis virus of Spodoptera frugiperda from Argentina. J Invertebr Pathol 71, 280-282.
    • (1998) J Invertebr Pathol , vol.71 , pp. 280-282
    • Berretta, M.F.1    Rios, M.L.2    de Sciocco, C.A.3
  • 7
    • 0025028289 scopus 로고
    • Baculovirus diversity and molecular biology
    • Blissard, G. W. & Rohrmann, G. F. (1990). Baculovirus diversity and molecular biology. Annu Rev Entomol 35, 127-155.
    • (1990) Annu Rev Entomol , vol.35 , pp. 127-155
    • Blissard, G.W.1    Rohrmann, G.F.2
  • 8
    • 50949109128 scopus 로고    scopus 로고
    • Blissard, G. W., Black B., Crook N. E., Keddie, B. A., Possee, R. D., Rohrmann, G. F., Theilmann, D. A. & Volkman, L. E. (2000). Family Baculoviridae. In Virus Taxonomy: Seventh Report of the International Committee on Taxonomy of Viruses, pp. 195-202. Edited by M. H. V. Van Regenmortel, C. M. Fauquet, D. H. L. Bishop, E. B. Carstens, M. K. Estes, S. M. Lemon, J. Maniloff, M. A. Mayo, D. J. McGeoch, C. R. Pringle & E. B. Wickner. San Diego, CA: Academic Press.
    • Blissard, G. W., Black B., Crook N. E., Keddie, B. A., Possee, R. D., Rohrmann, G. F., Theilmann, D. A. & Volkman, L. E. (2000). Family Baculoviridae. In Virus Taxonomy: Seventh Report of the International Committee on Taxonomy of Viruses, pp. 195-202. Edited by M. H. V. Van Regenmortel, C. M. Fauquet, D. H. L. Bishop, E. B. Carstens, M. K. Estes, S. M. Lemon, J. Maniloff, M. A. Mayo, D. J. McGeoch, C. R. Pringle & E. B. Wickner. San Diego, CA: Academic Press.
  • 9
    • 0031806649 scopus 로고    scopus 로고
    • Specificity of multiple homologous genomic regions in Spodoptera exigua nucleopolyhedrovirus DNA replication
    • Broer, R., Heldens, J. G. M., Strien, E A., Zuldema, D. & Vlak J. M. (1998). Specificity of multiple homologous genomic regions in Spodoptera exigua nucleopolyhedrovirus DNA replication. J Gen Virol 79, 1563-1572.
    • (1998) J Gen Virol , vol.79 , pp. 1563-1572
    • Broer, R.1    Heldens, J.G.M.2    Strien, E.A.3    Zuldema, D.4    Vlak, J.M.5
  • 10
    • 0033984609 scopus 로고    scopus 로고
    • Weighted neighbor joining: A likelihood-based approach to distance-based phylogeny reconstruction
    • Bruno, W. J., Socci, N. D. & Halpern, A. L. (2000). Weighted neighbor joining: a likelihood-based approach to distance-based phylogeny reconstruction. Mol Biol Evol 17, 189-197.
    • (2000) Mol Biol Evol , vol.17 , pp. 189-197
    • Bruno, W.J.1    Socci, N.D.2    Halpern, A.L.3
  • 11
    • 0032608072 scopus 로고    scopus 로고
    • Group II nucleopolyhedrovirus subgroups revealed by phylogenetic analysis of polyhedrin and DNA polymerase gene sequences
    • Bulach, D. M., Kumar, C. A., Zaia, A., Liang, B. & Tribe, D. E. (1999). Group II nucleopolyhedrovirus subgroups revealed by phylogenetic analysis of polyhedrin and DNA polymerase gene sequences. J Invertebr Pathol 73, 59-73.
    • (1999) J Invertebr Pathol , vol.73 , pp. 59-73
    • Bulach, D.M.1    Kumar, C.A.2    Zaia, A.3    Liang, B.4    Tribe, D.E.5
  • 13
    • 33745777380 scopus 로고    scopus 로고
    • Sequence analysis and organization of the Neodiprion abietis nucleopolyhedrovirus genome
    • Duffy, S. P., Young, A. M., Morin, B., Lucarotti, C. J., Koop, B. F. & Levin, D. B. (2006). Sequence analysis and organization of the Neodiprion abietis nucleopolyhedrovirus genome. J Virol 80, 6952-6963.
    • (2006) J Virol , vol.80 , pp. 6952-6963
    • Duffy, S.P.1    Young, A.M.2    Morin, B.3    Lucarotti, C.J.4    Koop, B.F.5    Levin, D.B.6
  • 14
    • 50949109628 scopus 로고    scopus 로고
    • Felsenstein, J, 1989, PHYLIP, phylogeny inference package version 3.2, Cladistics 5, 164-166
    • Felsenstein, J. (1989). PHYLIP - phylogeny inference package (version 3.2). Cladistics 5, 164-166.
  • 16
    • 0032930001 scopus 로고    scopus 로고
    • Sequence analysis of the genome of Bombyx mori nucleopolyhedrovirus
    • Gomi, S., Majima, K. & Maeda, S. (1999). Sequence analysis of the genome of Bombyx mori nucleopolyhedrovirus. J Gen Virol 80, 1323-1337.
    • (1999) J Gen Virol , vol.80 , pp. 1323-1337
    • Gomi, S.1    Majima, K.2    Maeda, S.3
  • 17
    • 0024670685 scopus 로고
    • Insertion of the SfMNPV polyhedrin gene into an AcMNPV polyhednin deletion mutant during viral infection
    • Gonzalez, M. A.,.Smith, G. E. & Summers, M. D. (1989). Insertion of the SfMNPV polyhedrin gene into an AcMNPV polyhednin deletion mutant during viral infection. Virology 170, 160-175.
    • (1989) Virology , vol.170 , pp. 160-175
    • Gonzalez, M.A.1    Smith, G.E.2    Summers, M.D.3
  • 18
    • 0022526387 scopus 로고
    • Complete sequence and enhancer function of the homologous DNA regions of Autographa californica nuclear polyhedrosis virus
    • Guarino, L. A., Gonzalez, M. A. & Summers, M. D. (1986). Complete sequence and enhancer function of the homologous DNA regions of Autographa californica nuclear polyhedrosis virus. J Virol 60, 224-229.
    • (1986) J Virol , vol.60 , pp. 224-229
    • Guarino, L.A.1    Gonzalez, M.A.2    Summers, M.D.3
  • 19
    • 0033619202 scopus 로고    scopus 로고
    • Sequence analysis of the Xestia c-nigrum granulovirus genome
    • Hayakawa, T., Ko, R., Okano, K, Seong, S. I., Goto, C. & Maeda, S. (1999). Sequence analysis of the Xestia c-nigrum granulovirus genome. Virology 262, 277-297.
    • (1999) Virology , vol.262 , pp. 277-297
    • Hayakawa, T.1    Ko, R.2    Okano, K.3    Seong, S.I.4    Goto, C.5    Maeda, S.6
  • 20
    • 0030960271 scopus 로고    scopus 로고
    • Identification and functional analysis of a non-hr origin of DNA replication in the genome of Spodoptera exigua multicapsid nucleopolyhedrovirus
    • Heldens, J. G., Broer, R., Zuidema, D., Goldbach, R. W. & Vlak J. M. (1997). Identification and functional analysis of a non-hr origin of DNA replication in the genome of Spodoptera exigua multicapsid nucleopolyhedrovirus. J Gen Virol 78, 1497-1506.
    • (1997) J Gen Virol , vol.78 , pp. 1497-1506
    • Heldens, J.G.1    Broer, R.2    Zuidema, D.3    Goldbach, R.W.4    Vlak, J.M.5
  • 23
    • 0030971788 scopus 로고    scopus 로고
    • N-terminal sequences from Autographa californica nuclear polyhedrosis virus envelope proteins ODV-E66 and ODV-E25 are sufficient to direct reporter proteins to the nuclear envelope, intranuclear microvesicles and the envelope of occlusion derived virus
    • Hong, T., Summers, M. D. & Braunagel, S. C. (1997). N-terminal sequences from Autographa californica nuclear polyhedrosis virus envelope proteins ODV-E66 and ODV-E25 are sufficient to direct reporter proteins to the nuclear envelope, intranuclear microvesicles and the envelope of occlusion derived virus. Proc Natl Acad Sci U S A 94, 4050-4055.
    • (1997) Proc Natl Acad Sci U S A , vol.94 , pp. 4050-4055
    • Hong, T.1    Summers, M.D.2    Braunagel, S.C.3
  • 25
    • 33644582732 scopus 로고    scopus 로고
    • Genome sequence of an enhancin gene-rich nucleopolyhedrovirus (NPV) from Agrotis segetum: Collinearity with Spodoptera exigua multiple NPV
    • Jakubowska, A. K., Peters, S. A., Ziemnicka, J., Vlak, J. M. & van Oers, M. M. (2006). Genome sequence of an enhancin gene-rich nucleopolyhedrovirus (NPV) from Agrotis segetum: collinearity with Spodoptera exigua multiple NPV. J Gen Virol 87, 537-551.
    • (2006) J Gen Virol , vol.87 , pp. 537-551
    • Jakubowska, A.K.1    Peters, S.A.2    Ziemnicka, J.3    Vlak, J.M.4    van Oers, M.M.5
  • 27
    • 0019487295 scopus 로고
    • Investigation of genetic heterogeneity in wild isolates of Spodoptera frugiperda nuclear polyhedrosis virus by restriction endonuclease analysis of plaque-purified variants
    • Knell, J. D. & Summers, M. D. (1981). Investigation of genetic heterogeneity in wild isolates of Spodoptera frugiperda nuclear polyhedrosis virus by restriction endonuclease analysis of plaque-purified variants. Virology 112, 190-197.
    • (1981) Virology , vol.112 , pp. 190-197
    • Knell, J.D.1    Summers, M.D.2
  • 29
    • 2942693569 scopus 로고    scopus 로고
    • Sequence and organization of the Neodiprion lecontei nucleopolyhedrovirus genome
    • Lauzon, H. A. M., Lucarotti, C. J., Krell, P. J., Feng, Q., Retnakaran, A. & Arif, B. M. (2004). Sequence and organization of the Neodiprion lecontei nucleopolyhedrovirus genome. J Virol 78, 7023-7035.
    • (2004) J Virol , vol.78 , pp. 7023-7035
    • Lauzon, H.A.M.1    Lucarotti, C.J.2    Krell, P.J.3    Feng, Q.4    Retnakaran, A.5    Arif, B.M.6
  • 30
    • 16844376431 scopus 로고    scopus 로고
    • Gene organization and sequencing of the Choristoneura fumiferana defective nucleopolyhedrovirus genome
    • Lauzon, H. A. M., Jamieson, P. B., Krell, P. J. & Arif, B. M. (2005). Gene organization and sequencing of the Choristoneura fumiferana defective nucleopolyhedrovirus genome. J Gen Virol 86, 945-961.
    • (2005) J Gen Virol , vol.86 , pp. 945-961
    • Lauzon, H.A.M.1    Jamieson, P.B.2    Krell, P.J.3    Arif, B.M.4
  • 31
    • 0027422777 scopus 로고
    • Characterization of the replication of plasmids containing hr sequences in baculovirus-infected Spodoptera frugiperda cells
    • Leisy, D. J. & Rohrmann, G. F. (1993). Characterization of the replication of plasmids containing hr sequences in baculovirus-infected Spodoptera frugiperda cells. Virology 196, 722-730.
    • (1993) Virology , vol.196 , pp. 722-730
    • Leisy, D.J.1    Rohrmann, G.F.2
  • 32
    • 0029058616 scopus 로고
    • The Autographa californica nuclear polyhedrosis virus homologous region 1a: Identical sequences are essential for DNA replication activity and transcriptional enhancer function
    • Leisy, D. J., Rasmussen, C., Kim, H. T. & Rohrmann, G. F. (1995). The Autographa californica nuclear polyhedrosis virus homologous region 1a: identical sequences are essential for DNA replication activity and transcriptional enhancer function. Virology 208, 742-752.
    • (1995) Virology , vol.208 , pp. 742-752
    • Leisy, D.J.1    Rasmussen, C.2    Kim, H.T.3    Rohrmann, G.F.4
  • 33
    • 0036308465 scopus 로고    scopus 로고
    • Identification and genomic analysis of a second species of nucleopolyhedrovirus isolated from Mamestra configurata
    • Li, L., Donly, C, Li, O., Willis, L. G., Keddie, B. A., Erlandson, M. A. & Theilmann, D. A. (2002). Identification and genomic analysis of a second species of nucleopolyhedrovirus isolated from Mamestra configurata. Virology 297, 226-244.
    • (2002) Virology , vol.297 , pp. 226-244
    • Li, L.1    Donly, C.2    Li, O.3    Willis, L.G.4    Keddie, B.A.5    Erlandson, M.A.6    Theilmann, D.A.7
  • 34
    • 0029022838 scopus 로고
    • Nucleotide sequence and transcriptional analysis of the gp41 gene of Spodoptera frugiperda nuclear polyhedrosis virus
    • Liu, J. C. & Maruniak J. E. (1995). Nucleotide sequence and transcriptional analysis of the gp41 gene of Spodoptera frugiperda nuclear polyhedrosis virus. J Gen Virol 76, 1443-1450.
    • (1995) J Gen Virol , vol.76 , pp. 1443-1450
    • Liu, J.C.1    Maruniak, J.E.2
  • 35
    • 0019430575 scopus 로고
    • Spodoptera frugiperda nuclear polyhedrosis virus genome: Physical maps for restriction endonucleases BamHI and HindIII
    • Loh, L. C., Hamm, J. J. & Huang, E. S. (1981). Spodoptera frugiperda nuclear polyhedrosis virus genome: physical maps for restriction endonucleases BamHI and HindIII. J Virol 38, 922-931.
    • (1981) J Virol , vol.38 , pp. 922-931
    • Loh, L.C.1    Hamm, J.J.2    Huang, E.S.3
  • 36
    • 0020406050 scopus 로고
    • Analysis of the Spodoptera frugiperda nuclear polyhedrosis virus genome by restriction endonucleases and electron microscopy
    • Loh, L. C., Hamm, J. J., Kawanishi, C. & Huang, E. S. (1982). Analysis of the Spodoptera frugiperda nuclear polyhedrosis virus genome by restriction endonucleases and electron microscopy. J Virol 44, 747-751.
    • (1982) J Virol , vol.44 , pp. 747-751
    • Loh, L.C.1    Hamm, J.J.2    Kawanishi, C.3    Huang, E.S.4
  • 37
    • 0021221109 scopus 로고
    • Physical maps of SfMNPV baculovirus DNA and its genomic variants
    • Maruniak, J. E., Brown, S. E. & Knudson, D. L. (1984). Physical maps of SfMNPV baculovirus DNA and its genomic variants. Virology 136, 221-234.
    • (1984) Virology , vol.136 , pp. 221-234
    • Maruniak, J.E.1    Brown, S.E.2    Knudson, D.L.3
  • 38
    • 0346734126 scopus 로고    scopus 로고
    • Extensive gene gain associated with adaptive evolution of poxviruses
    • McLysaght A., Baldi, P. F. & Gaut, B. S. (2003). Extensive gene gain associated with adaptive evolution of poxviruses. Proc Natl Acad Sci U S A 100, 15655-15660.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 15655-15660
    • McLysaght, A.1    Baldi, P.F.2    Gaut, B.S.3
  • 42
    • 0034764340 scopus 로고    scopus 로고
    • Having a BLAST with bioinformatics (and avoiding BLASTphemy)
    • reviews2002.1-reviews2002.10
    • Pertsemlidis, A. & Fondon, J. W., III (2001). Having a BLAST with bioinformatics (and avoiding BLASTphemy). Genome Biol 2, reviews2002.1-reviews2002.10.
    • (2001) Genome Biol , vol.2
    • Pertsemlidis, A.1    Fondon III, J.W.2
  • 45
    • 0026198801 scopus 로고
    • DNA restriction polymorphism in wild isolates of Spodoptera frugiperda nuclear polyhedrosis virus
    • Shapiro, D. I., Fuxa, J. R., Braymer, H. D. & Pashley, D. P. (1991). DNA restriction polymorphism in wild isolates of Spodoptera frugiperda nuclear polyhedrosis virus. J Invertebr Pathol 58, 96-105.
    • (1991) J Invertebr Pathol , vol.58 , pp. 96-105
    • Shapiro, D.I.1    Fuxa, J.R.2    Braymer, H.D.3    Pashley, D.P.4
  • 46
    • 17644400701 scopus 로고    scopus 로고
    • Physical and partial genetic map of Spodoptera frugiperda nucleopolyhedrovirus (SfMNPV) genome
    • Simon, O., Chevenet F., Williams, T., Caballero, P. & Lopez-Ferber, M. (2005a). Physical and partial genetic map of Spodoptera frugiperda nucleopolyhedrovirus (SfMNPV) genome. Virus Genes 30, 403-417.
    • (2005) Virus Genes , vol.30 , pp. 403-417
    • Simon, O.1    Chevenet, F.2    Williams, T.3    Caballero, P.4    Lopez-Ferber, M.5
  • 47
    • 12844250090 scopus 로고    scopus 로고
    • Nucleotide sequence and transcriptional analysis of the pif gene of Spodoptera frugiperda nucleopolyhedrovirus (SfMNPV)
    • Simon, O., Gutierrez, S., Williams, T., Caballero, P. & Lopez-Ferber, M. (2005b). Nucleotide sequence and transcriptional analysis of the pif gene of Spodoptera frugiperda nucleopolyhedrovirus (SfMNPV). Virus Res 108, 213-220.
    • (2005) Virus Res , vol.108 , pp. 213-220
    • Simon, O.1    Gutierrez, S.2    Williams, T.3    Caballero, P.4    Lopez-Ferber, M.5
  • 48
    • 0029654258 scopus 로고
    • A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis
    • Sonnhammer, E. L. L. & Durbin, R. (1995). A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis. Gene 167, GC1-GC10.
    • (1995) Gene , vol.167
    • Sonnhammer, E.L.L.1    Durbin, R.2
  • 49
    • 14644438364 scopus 로고    scopus 로고
    • Circular genome visualization and exploration using CGView
    • Stothard, P. & Wishart, D. S. (2005). Circular genome visualization and exploration using CGView. Bioinformatics 21, 537-539.
    • (2005) Bioinformatics , vol.21 , pp. 537-539
    • Stothard, P.1    Wishart, D.S.2
  • 51
    • 0026559320 scopus 로고
    • Tandemly repeated sequence at the 3′ end of the IE-2 gene of the baculovirus Orgyia pseudotsugata multicapsid nuclear polyhedrosis virus is an enhancer element
    • Theilmann, D. A. & Stewart, S. (1992). Tandemly repeated sequence at the 3′ end of the IE-2 gene of the baculovirus Orgyia pseudotsugata multicapsid nuclear polyhedrosis virus is an enhancer element. Virology 187, 97-106.
    • (1992) Virology , vol.187 , pp. 97-106
    • Theilmann, D.A.1    Stewart, S.2
  • 52
    • 0141924320 scopus 로고    scopus 로고
    • Sequence analysis of a 5.1 kbp region of the Spodoptera frugiperda multicapsid nucleopolyhedrovirus genome that comprises a functional ecdysteroid UDP-glucosyltransferase (egt) gene
    • Tumilasci, V. F., Leal, E., Zanotto, P. M., Luque, T. & Wolff, J. L. (2003). Sequence analysis of a 5.1 kbp region of the Spodoptera frugiperda multicapsid nucleopolyhedrovirus genome that comprises a functional ecdysteroid UDP-glucosyltransferase (egt) gene. Virus Genes 27, 137-144.
    • (2003) Virus Genes , vol.27 , pp. 137-144
    • Tumilasci, V.F.1    Leal, E.2    Zanotto, P.M.3    Luque, T.4    Wolff, J.L.5
  • 53
    • 0020059096 scopus 로고
    • Orientation of the genome of Autographa californica nuclear polyhedrosis virus: A proposal
    • Vlak, J. M. & Smith, G. E. (1982). Orientation of the genome of Autographa californica nuclear polyhedrosis virus: a proposal. J Virol 41, 1118-1121.
    • (1982) J Virol , vol.41 , pp. 1118-1121
    • Vlak, J.M.1    Smith, G.E.2
  • 54
    • 22644432782 scopus 로고    scopus 로고
    • Sequence analysis of the complete genome of Trichoplusia ni single nucleopolyhedrovirus and the identification of a baculoviral photolyase gene
    • Willis, L. G., Siepp, R., Stewart, T. M., Erlandson, M. A. & Theilmann, D. A. (2005). Sequence analysis of the complete genome of Trichoplusia ni single nucleopolyhedrovirus and the identification of a baculoviral photolyase gene. Virology 338, 209-226.
    • (2005) Virology , vol.338 , pp. 209-226
    • Willis, L.G.1    Siepp, R.2    Stewart, T.M.3    Erlandson, M.A.4    Theilmann, D.A.5
  • 55
    • 0027665269 scopus 로고
    • Phylogenetic interrelationships among baculoviruses: Evolutionary rates and host associations
    • Zanotto, P. M., Kessing, B. D. & Maruniak, J. E. (1993). Phylogenetic interrelationships among baculoviruses: evolutionary rates and host associations. J Invertebr Pathol 62, 147-164.
    • (1993) J Invertebr Pathol , vol.62 , pp. 147-164
    • Zanotto, P.M.1    Kessing, B.D.2    Maruniak, J.E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.