Identification of differentially expressed proteins in Ficedula flycatchers

Proteomics

Volumn 8, Issue 10, 2008, Pages 2150-2153

  Buggiotti, Laura ^a   Primmer, Craig R ^a   Kouvonen, Petri ^b   Bureš, Stanislav ^c   Corthals, Garry L ^b   Leder, Erica H ^a  

^a UNIVERSITY OF TURKU   (Finland)

^b TURKU CENTRE FOR BIOTECHNOLOGY   (Finland)

^c PALACKÝ UNIVERSITY   (Czech Republic)

Author keywords

2 DE; Database; Ficedula; Hybrid; Mass spectrometry

Indexed keywords

AMINO ACID SEQUENCE; ANIMAL TISSUE; ARTICLE; DATA BASE; MASS SPECTROMETRY; NONHUMAN; ORGANISM; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEOMICS;

ANIMALS; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; MASS SPECTROMETRY; PROTEINS; PROTEOMICS; SONGBIRDS;

FICEDULA;

EID: 44649088315     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.200701006     Document Type: Article

References (22)

1. Pandey, A., Mann, M., Proteomics to study genes and genomes. Nature 2000, 405 837-846
2. Feder, M. E., Walser, J. C., The biological limitations of transcriptomics in elucidating stress and stress responses. J. Evol. Biol. 2005, 18, 901-910
3. Alatalo, R. V., Eriksson, D., Gustafsson, L., Lundberg, A., Hybridization between pied and collared flycatchers - sexual selection and speciation sheory. J. Evol. Biol. 1990, 3, 375-389
4. Saetre, G. P., Mourn, T., Bures, S., Kral, M. et al., A sexually selected character displacement in flycatchers reinforces premating isolation. Nature 1997, 387, 589-592.
5. Lundberg, A., Alatalo, R. V., The pied flycatcher. Poyser, London 1992.
6. Saetre, G.-P., Král, K., Bures, S., Ims, R. A., Dynamics of a clinal hybrid zone and a comparison with island hybrid zones of flycatchers (Ficedula hypoleuca and F. albicollis). J. Zool. 1999, 53-64
7. Borge, T., Lindroos, K., Nadvornik, P., Syvanen, A. C., Saetre, G. P., Amount of introgression in flycatcher hybrid zones reflects regional differences in pre and post-zygotic barriers to gene exchange. J. Evol. Biol. 2005, 18, 1416-1424
8. Haavie, J., Borge, T., Bures, S., Garamszegi, L. Z. et al., Flycatcher song in allopatry and sympatry - convergence, divergence and reinforcement. J. Evol. Biol. 2004, 17, 227-237
9. Primmer, C. R., Borge, T., Lindell, J., Saetre, G. P., Single-nucleotide polymorphism characterization in species with limited available sequence information: high nucleotide diversity revealed in the avian genome. Mol. Ecol. 2002, 11, 603-612
10. Saetre, G. P., Borge, T., Lindell, J., Mourn, T. et al., Speciation, introgressive hybridization and nonlinear rate of molecular evolution in flycatchers. Mol. Ecol. 2001, 10, 737-749
11. Saetre, G. P., Borge, T., Lindroos, K., Haavie, J. et al., Sex chromosome evolution and speciation in Ficedula flycatchers. Proc. R. Soc. London Series B - Biol./Sci 2003, 270, 53-59
12. Veen, T., Borge, T., Griffith, S. C., Saetre, G. P. et al., Hybridization and adaptive mate choice in flycatchers. Nature 2001, 411, 45-50
13. Asirvatham, V. S., Watson, B. S., Sumner, L. W., Analytical and biological variances associated with proteomic studies of Medicago truncatula by two-dimensional polyacrylamide gel electrophoresis. Proteomics 2002, 2, 960-968
14. Klose, J., Nock, C., Herrmann, M., Stuhler, K. et al., Genetic analysis of the mouse brain proteome. Nat. Genet. 2002, 30, 385-393
15. Dorus, S., Busby, S. A., Gerike, U., Shabanowitz, J. et al., Genomic and functional evolution of the Drosophila melanogaster sperm proteome. Nat. Genet. 2006, 38, 1440-1445
16. Rakkola, R., Matikainen, S., Nyman, T. A., Proteome analysis of human macrophages reveals the upregulation of manganese-containing superoxide dismutase after toll-like receptor activation. Proteomics 2007, 7, 378-384
17. Klose, J., Protein mapping by combined isoelectric focusing and electrophoresis of mouse tissues. A novel approach to testing for induced point mutations in mammals. Humangenetik 1975, 26, 231-243
18. O'Farrell, P. H., High resolution two-dimensional electrophoresis of proteins. J. Biol. Chem. 1975, 250, 4007-4021
19. O'Connell, K. L., Stults, J. T., Identification of mouse liver proteins on two-dimensional electrophoresis gels by matrix-assisted laser desorption/ionization mass spectrometry of in situ enzymatic digests. Electrophoresis 1997, 18, 349-359.
20. Shi, R., Kumar, C., Zougman, A., Zhang, Y. et al., Analysis of the mouse liver proteome using advanced mass spectrometry. J. Proteome Res. 2007, 6, 2963-2972
21. Chen, M., Ying, W., Song, Y., Liu, X. et al., Analysis of human liver proteome using replicate shotgun strategy. Proteomics 2007, 7, 2479-2488
22. Waridel, P., Frank, A., Thomas, H., Surendranath, V. et al., Sequence similarity-driven proteomics in organisms with unknown genomes by LC-MS/MS and automated de novo sequencing. Proteomics 2007, 7, 2318-2329