Ouasispecies dynamics and fixation of a synonymous mutation in hantavirus transmission

Journal of General Virology

Volumn 89, Issue 5, 2008, Pages 1309-1313

  Sironen, Tarja ^a   Kallio, Eva R ^b,c   Vaheri, Antti ^a   Lundkvist, Åke ^d   Plyusnin, Alexander ^a,d  

^a UNIVERSITY OF HELSINKI   (Finland)

^b FINNISH FOREST RESEARCH INSTITUTE   (Finland)

^c UNIVERSITY OF JYVÄSKYLÄ   (Finland)

^d KAROLINSKA INSTITUTE   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

ANIMAL EXPERIMENT; ANIMAL MODEL; ANIMAL TISSUE; ARTICLE; CONTROLLED STUDY; GENE MUTATION; GENE SEQUENCE; GENETIC VARIABILITY; HANTAVIRUS; IN VIVO STUDY; NONHUMAN; POPULATION DYNAMICS; POPULATION GENETICS; PRIORITY JOURNAL; RAT; VIRAL GENETICS; VIRUS INFECTION; VIRUS REPLICATION; VIRUS TRANSMISSION; ANIMAL; ARVICOLINAE; DISEASE TRANSMISSION; DNA SEQUENCE; GENETICS; MOLECULAR EVOLUTION; MUTATION; VIROLOGY;

ANIMALIA; HANTAVIRUS; RNA VIRUSES; RODENTIA;

ANIMALS; ARVICOLINAE; EVOLUTION, MOLECULAR; HANTAVIRUS; HANTAVIRUS INFECTIONS; MUTATION; RNA, VIRAL; SEQUENCE ANALYSIS, DNA;

EID: 44649087284     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/vir.0.83662-0     Document Type: Article

References (25)

1. Domingo, E. & Holland, J. J. (1997). RNA virus mutations and fitness for survival. Annu Rev Microbiol 51, 151-178.
2. Domingo, E, Biebricher, C. K., Eigen, M. & Holland, J. J. (2001). Quasispecies and RNA Virus Evolution: Principles and Consequences. Georgetown, TX: Landes Bioscience.
3. Feuer, R., Boone, J. D., Netski, D., Morzunov, S. P. & St Jeor, S. C. (1999). Temporal and spatial analysis of Sin Nombre virus quasispecies in naturally infected rodents. J. Virol 73, 9544-9554.
4. Gavrilovskaya, I. N., Chumakov, M. P., Apekina, N. S., Ryltseva, E. V., Martiyanova, L. I., Gorbachkova, E. A., Bernshtein, A. D., Zakharova, M. A. & Boiko, V. A. (1983). Adaptation to laboratory and wild animals of the haemorrhagic fever with renal syndrome virus present in the foci of European U.S.S.R. Brief report. Arch Virol 77, 87-90.
5. Groen, J., Gerding, M., Koeman, J. P., Roholl, P. J., van Amerongen, G., Jordans, H. G., Niesters, H. G. & Osterhaus, A. D. (1995). A macaque model for hantavirus infection. J Infect Dis 172, 38-44.
6. Hamano, T., Matsuo, K., Hibi, Y., Victoriano, A. F., Takahashi, N., Mabuchi, Y., Soji, T., Irie, S., Sawanpanyalert, P. & other authors (2007). A single-nucleotide synonymous mutation in the gag gene controlling human immunodeficiency virus type 1 virion production. J Virol 81, 1528-1533.
7. Kallio, E. R., Klingström, J., Gustafsson, E., Manni, T., Vaheri, A., Henttonen, H., Vapalahti, O. & Lundkvist, Å. (2006). Prolonged survival of Puumala hantavirus outside the host: evidence for indirect transmission via the environment. J Gen Virol 87, 2127-2134.
8. Kaukinen, P., Vaheri, A. & Plyusnin, A. (2005). Hantavirus nucleocapsid protein: a multifunctional molecule with both house-keeping and ambassadorial duties. Arch Virol 150, 1693-1713.
9. Klingström, J., Plyusnin, A., Vaheri, A. & Lundkvist, Å. (2002). Wild-type Puumala hantavirus infection induces cytokines, C-reactive protein, creatinine, and nitric oxide in cynomolgus macaques. J Virol 76, 444-449.
10. Lundkvist, Å., Cheng, Y., Sjölander, K. B., Niklasson, B., Vaheri, A. Plyusnin, A. (1997). Cell culture adaptation of Puumala hantavirus changes the infectivity for its natural reservoir, Clethrionomys glareolus, and leads to accumulation of mutants with altered genomic RNA S segment. J Virol 71, 9515-9523.
11. Manrubia, S. C., Escarmis, C., Domingo, E. & Lazaro, E. (2005). High mutation rates, bottlenecks, and robustness of RNA viral quasispecics. Gene 347, 273-282.
12. Meyer, B. J. & Schmaljohn, C. S. (2000). Persistent hantavirus infections: characteristics and mechanisms. Trends Microbiol 8, 61-67.
13. Nakamura, Y., Gojobori, T. & Ikemura, T. (2000). Codon usage tabulated from international DNA sequence databases: status for the year 2000. Nucleic Acids Res 28, 292.
14. Nemirov, K., Lundkvist, A., Vaheri, A. & Plyusnin, A. (2003). Adaptation of Puumala hantavirus to cell culture is associated with point mutations in the coding region of the L segment and in the noncoding regions of the S segment. J Virol 77, 8793-8800.
15. Nichol, S. T., Beaty, B. J., Elliott R. M., Goldbach, R., Plyusnin, A., Schmaljohn, C. S. & Tesh, R. B. (2005). Family Bunyaviridae. In Virus Taxonomy: Eighth Report of the International Committee on Taxonomy of Viruses, pp. 695-716. Edited by C. M. Fauquet, M. A. Mayo, J. Maniloff, U. Desselberger & L. A. Ball. San Diego, CA: Elsevier Academic Press.
16. Novella, I. S., Zarate, S., Metzgar, D. & Ebendick-Corpus, B. E. (2004). Positive selection of synonymous mutations in vesicular stomatitis virus. J Mol Biol 342, 1415-1421.
17. Plyusnin, A. & Morzunov, S. P. (2001). Virus evolution and genetic diversity of hantaviruses and their rodent hosts. Curr Top Microbiol Immunol 256, 47-75.
18. Plyusnin, A., Vapalahti, O., Ultves, K., Lehväslaiho, H., Apekina, N., Gavrilovskaya, I., Blinov, V. & Vaheri, A. (1994). Sequences of wild Puumala virus genes show a correlation of genetic variation with geographic origin of the strains. J Gen Virol 75, 405-409.
19. Plyusnin, A, Vapalahti, O., Lehväslaiho, H., Apekina, N., Mikhailova, T., Gavrilovskaya, I., Laakkonen, J., Niemimaa, J., Henttonen, H. & Brummer-Korvenkontio, M. (1995). Genetic variation of wild Puumala viruses within the serotype, local rodent populations and individual animal. Virus Res, 38, 25-41.
20. Plyusnin, A., Cheng, Y., Lehväslaiho, H. & Vaheri, A. (1996a). Quasispecies in wild-type Tula hantavivus populations. J Virol 70, 9060-9063.
21. Plyusnin, A., Vapalahti, O. & Vaheri, A. (1996b). Hantaviruses: genome structure, expression and evolution. J Gen Virol 77, 2677-2687.
22. Plyusnin, A., Hörling, J., Kanerva, M., Mustonen, J., Cheng, Y., Partanen, J., Vapalahti, O., Kukkonen, S. K., Niemimaa, J. & other authors (1997). Puumala hantavirus genome in patients with nephropathia epidemica: correlation of PCR positivity with HLA haplotype and link to viral sequences in local rodents. J Clin Microbiol 35, 1090-1096.
23. Sironen, T., Vaheri, A. & Plyusnin, A. (2001). Molecular evolution of Puumala hantavirus. J Virol 75, 11803-11810.
24. Vapalahti, O., Mustonen, J., Lundkvist, Å., Henttonen, H., Plyusnin, A. & Vaheri, A. (2003). Hantavirus infections in Europe. Lancet Infect Dis 3, 653-661.
25. Vignuzzi, M., Stone, J. K., Arnold, J. J., Cameron, C. E. & Andino, R. (2006). Quasispecies diversity determines pathogenesis through cooperative interactions in a viral population. Nature 439, 344-348.