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Volumn 27, Issue 6, 2008, Pages 805-813

An original genetic approach to the fully automatic gridding of microarray images

Author keywords

Genetic algorithm (GA); Image analysis; Microarrays; Spot gridding

Indexed keywords

IMAGE ANALYSIS; MICROARRAYS; OPTIMIZATION; PROBLEM SOLVING;

EID: 44449178309     PISSN: 02780062     EISSN: None     Source Type: Journal    
DOI: 10.1109/TMI.2008.915561     Document Type: Article
Times cited : (40)

References (32)
  • 1
    • 0242317346 scopus 로고    scopus 로고
    • Fundamentals of cdna microarray data analysis
    • Nov
    • Y. F. Leung and D. Cavalieri, "Fundamentals of cdna microarray data analysis," Trends Genet., vol. 19, no. 11, pp. 649-659, Nov. 2003.
    • (2003) Trends Genet , vol.19 , Issue.11 , pp. 649-659
    • Leung, Y.F.1    Cavalieri, D.2
  • 4
    • 33845588588 scopus 로고    scopus 로고
    • An automated gridding and segmentation method for cdna microarray image analysis
    • Salt Lake City, UT
    • W. B. Chen, C. Zhang, and W. L. Liu, "An automated gridding and segmentation method for cdna microarray image analysis," in Proc. 19th IEEE Int. Symp. Computer-Based Med. Syst., Salt Lake City, UT, 2006, pp. 893-898.
    • (2006) Proc. 19th IEEE Int. Symp. Computer-Based Med. Syst , pp. 893-898
    • Chen, W.B.1    Zhang, C.2    Liu, W.L.3
  • 5
    • 0037195138 scopus 로고    scopus 로고
    • Quantitative noise analysis for gene expression microarray experiments
    • Y. Tu, G. Stolovitzky, and U. Klein, "Quantitative noise analysis for gene expression microarray experiments," in Proc. Nat. Acad. Sci., 2002, pp. 14031-14036.
    • (2002) Proc. Nat. Acad. Sci , pp. 14031-14036
    • Tu, Y.1    Stolovitzky, G.2    Klein, U.3
  • 6
    • 44449088745 scopus 로고    scopus 로고
    • Online, Available
    • M. B. Eisen, ScanAlyze Nov. 1999 [Online]. Available: http://rana.lbl.gov/EisenSoftware.htm.
    • (1999)
    • Eisen, M.B.1    Nov, S.2
  • 7
    • 0003432145 scopus 로고    scopus 로고
    • Dapple: Improved techniques for finding spots on DNA microarrays UW CSE Tech
    • Rep. UWTR 2000-08-05, Aug
    • J. Buhler, T. Ideker, and D. Haynor, Dapple: Improved techniques for finding spots on DNA microarrays UW CSE Tech. Rep. UWTR 2000-08-05, Aug. 2000, pp. 1-12.
    • (2000) , pp. 1-12
    • Buhler, J.1    Ideker, T.2    Haynor, D.3
  • 8
    • 44449126940 scopus 로고    scopus 로고
    • Biodiscovery, Inc, Online, Available
    • Biodiscovery, Inc., ImaGene 2005 [Online], Available: http://www.biodiscovery.com/imagene.asp
    • (2005) ImaGene
  • 9
    • 0033818954 scopus 로고    scopus 로고
    • A concise guide to cdna microarray analysis
    • Sep
    • P. Hegde et al., "A concise guide to cdna microarray analysis," Biotechniques, vol. 29, no. 3, pp. 548-556, Sep. 2000.
    • (2000) Biotechniques , vol.29 , Issue.3 , pp. 548-556
    • Hegde, P.1
  • 10
    • 1542714899 scopus 로고    scopus 로고
    • Reducing the variability in cdna microarray image processing by bayesian inference
    • N. D. Lawrence, M. Milo, M. Niranjan, P. Rashbass, and P. Soullier, "Reducing the variability in cdna microarray image processing by bayesian inference," Bioinformatics, vol. 20, no. 4, pp. 518-526, 2004.
    • (2004) Bioinformatics , vol.20 , Issue.4 , pp. 518-526
    • Lawrence, N.D.1    Milo, M.2    Niranjan, M.3    Rashbass, P.4    Soullier, P.5
  • 11
    • 8844282649 scopus 로고    scopus 로고
    • The automatic gridding algorithm based on projection for microarray image
    • Chengdu, China
    • N. Deng and H. Duan, "The automatic gridding algorithm based on projection for microarray image," in Proc. 2004 Int. Conf. Intell. Mechatronics Automation, Chengdu, China, 2004, pp. 254-257.
    • (2004) Proc. 2004 Int. Conf. Intell. Mechatronics Automation , pp. 254-257
    • Deng, N.1    Duan, H.2
  • 12
    • 0037405886 scopus 로고    scopus 로고
    • Robust adaptive spot segmentation of DNA microarray images
    • A. W. Liew, H. Yan, and M. Yang, "Robust adaptive spot segmentation of DNA microarray images," Pattern Recognit., vol. 36, pp. 1251-1254, 2003.
    • (2003) Pattern Recognit , vol.36 , pp. 1251-1254
    • Liew, A.W.1    Yan, H.2    Yang, M.3
  • 13
    • 33144475033 scopus 로고    scopus 로고
    • L. Rueda and V. Vidyadharan, A hill-climbing approach for automatic gridding of cdna microarray images, IEEE/ACM Trans. Comput. Biol. Bioinf., 3, no. 1, pp. 72-83, Jan.-Mar. 2006.
    • L. Rueda and V. Vidyadharan, "A hill-climbing approach for automatic gridding of cdna microarray images," IEEE/ACM Trans. Comput. Biol. Bioinf., vol. 3, no. 1, pp. 72-83, Jan.-Mar. 2006.
  • 14
    • 10044294938 scopus 로고    scopus 로고
    • A markov random field approach to microarray image gridding
    • Cambridge, U.K
    • G. Antoniol and M. Ceccarelli, "A markov random field approach to microarray image gridding," in Proc. IEEE Int. Conf. Pattern Recognit., Cambridge, U.K., 2004, pp. 550-553.
    • (2004) Proc. IEEE Int. Conf. Pattern Recognit , pp. 550-553
    • Antoniol, G.1    Ceccarelli, M.2
  • 15
    • 0043143893 scopus 로고    scopus 로고
    • An automatic block and spot indexing with k-nearest neighbors graph for microarray image analysis
    • Oct
    • H. Y. Jung and H. G. Cho, "An automatic block and spot indexing with k-nearest neighbors graph for microarray image analysis," Bioinformatics, vol. 18, no. 1, pp. 141-151, Oct. 2002.
    • (2002) Bioinformatics , vol.18 , Issue.1 , pp. 141-151
    • Jung, H.Y.1    Cho, H.G.2
  • 16
    • 1242308354 scopus 로고    scopus 로고
    • Gridline: Automatic grid alignment in DNA microarray scans
    • Jan
    • P. Bajcsy, "Gridline: Automatic grid alignment in DNA microarray scans," IEEE Trans. Image Process., vol. 13, no. 1, pp. 15-25, Jan. 2004.
    • (2004) IEEE Trans. Image Process , vol.13 , Issue.1 , pp. 15-25
    • Bajcsy, P.1
  • 17
    • 0034894449 scopus 로고    scopus 로고
    • Automated image analysis for array hybridization experiments
    • Jul. 1
    • M. Steinfath, W. Wruck, H. Seidel, H. Lehrach, U. Radelof, and J. O'Brien, "Automated image analysis for array hybridization experiments," Bioinformatics, vol. 17, no. 7, pp. 634-641, Jul. 1, 2001.
    • (2001) Bioinformatics , vol.17 , Issue.7 , pp. 634-641
    • Steinfath, M.1    Wruck, W.2    Seidel, H.3    Lehrach, H.4    Radelof, U.5    O'Brien, J.6
  • 18
    • 11144277252 scopus 로고    scopus 로고
    • Robust DNA microarray image analysis
    • N. Brandle, H. Bischof, and H. Lapp, "Robust DNA microarray image analysis," Mach. Vis. Appl., vol. 15, pp. 11-28, 2003.
    • (2003) Mach. Vis. Appl , vol.15 , pp. 11-28
    • Brandle, N.1    Bischof, H.2    Lapp, H.3
  • 19
    • 31144439533 scopus 로고    scopus 로고
    • Gridding spot centers of smoothly distorted microarray images
    • Feb
    • J. Ho, W. L. Hwang, H. H. S. Lu, and D. T. Lee, "Gridding spot centers of smoothly distorted microarray images," IEEE Trans. Image Process., vol. 15, no. 2, pp. 342-353, Feb. 2006.
    • (2006) IEEE Trans. Image Process , vol.15 , Issue.2 , pp. 342-353
    • Ho, J.1    Hwang, W.L.2    Lu, H.H.S.3    Lee, D.T.4
  • 20
    • 33845220167 scopus 로고    scopus 로고
    • Microarray image gridding with stochastic search based approaches
    • Feb
    • G. Antoniol and M. Ceccarelli, "Microarray image gridding with stochastic search based approaches," Image Vison Comput., vol. 25, no. 2, pp. 155-163, Feb. 2007.
    • (2007) Image Vison Comput , vol.25 , Issue.2 , pp. 155-163
    • Antoniol, G.1    Ceccarelli, M.2
  • 22
    • 0032136585 scopus 로고    scopus 로고
    • Tackling real-coded genetic algorithms: Operators and tools for behavioral analysis
    • Nov
    • F. Herrera, M. Lozano, and J. L. Verdegay, "Tackling real-coded genetic algorithms: Operators and tools for behavioral analysis," Artif Intell. Rev., vol. 12, no. 4, pp. 265-319, Nov. 1998.
    • (1998) Artif Intell. Rev , vol.12 , Issue.4 , pp. 265-319
    • Herrera, F.1    Lozano, M.2    Verdegay, J.L.3
  • 23
    • 44449111534 scopus 로고    scopus 로고
    • Generic properties of the infinite population genetic algorithm,
    • Ph.D. dissertation, Dept. Math, Montana State Univ, Bozeman
    • C. S. M. Hayes, "Generic properties of the infinite population genetic algorithm," Ph.D. dissertation, Dept. Math., Montana State Univ., Bozeman, 2006.
    • (2006)
    • Hayes, C.S.M.1
  • 24
    • 0000448376 scopus 로고
    • Genetic algorithms, tournament selection, and the effects of noise
    • Jun
    • B. L. Miller and D. E. Goldberg, "Genetic algorithms, tournament selection, and the effects of noise," Complex Syst., vol. 9, no. 3, pp. 193-212, Jun. 1995.
    • (1995) Complex Syst , vol.9 , Issue.3 , pp. 193-212
    • Miller, B.L.1    Goldberg, D.E.2
  • 25
    • 14844346163 scopus 로고    scopus 로고
    • Hybrid crossover operators for real-coded genetic algorithms: An experimental study
    • Apr
    • F. Herrera, M. Lozano, and A. M. Sanchez, "Hybrid crossover operators for real-coded genetic algorithms: An experimental study," Soft Comput., vol. 9, no. 4, pp. 280-298, Apr. 2005.
    • (2005) Soft Comput , vol.9 , Issue.4 , pp. 280-298
    • Herrera, F.1    Lozano, M.2    Sanchez, A.M.3
  • 26
    • 33747613815 scopus 로고    scopus 로고
    • An improved genetic algorithm with average-bound crossover and wavelet mutation operations
    • S. H. Ling and F. H. F. Leung, "An improved genetic algorithm with average-bound crossover and wavelet mutation operations," Soft Comput., vol. 11, no. 1, pp. 7-31, 2007.
    • (2007) Soft Comput , vol.11 , Issue.1 , pp. 7-31
    • Ling, S.H.1    Leung, F.H.F.2
  • 27
    • 5044250422 scopus 로고    scopus 로고
    • Spot shape modelling and data transformations for microarrays
    • Apr. 8
    • C. T. Ekstrom, S. Bak, C. Kristensen, and M. Rudemo, "Spot shape modelling and data transformations for microarrays," Bioinformatics, vol. 20, no. 14, pp. 2270-2278, Apr. 8, 2004.
    • (2004) Bioinformatics , vol.20 , Issue.14 , pp. 2270-2278
    • Ekstrom, C.T.1    Bak, S.2    Kristensen, C.3    Rudemo, M.4
  • 28
    • 34248174790 scopus 로고    scopus 로고
    • Differential gene expression patterns and interaction networks in bcr-abl-positive and -negative adult acute lymphoblastic leukemias
    • Apr
    • D. Juric et al., "Differential gene expression patterns and interaction networks in bcr-abl-positive and -negative adult acute lymphoblastic leukemias," J. Clin. Oncol., vol. 25, no. 11, pp. 1341-1349, Apr. 2007.
    • (2007) J. Clin. Oncol , vol.25 , Issue.11 , pp. 1341-1349
    • Juric, D.1
  • 29
    • 23744506246 scopus 로고    scopus 로고
    • Mixture model analysis of DNA microarrray images
    • Jul
    • K. Blekas, N. P. Galatsanos, A. Likas, and I. E. Lagaris, "Mixture model analysis of DNA microarrray images," IEEE Trans. Med. Imag., vol. 24, no. 7, pp. 901-909, Jul. 2005.
    • (2005) IEEE Trans. Med. Imag , vol.24 , Issue.7 , pp. 901-909
    • Blekas, K.1    Galatsanos, N.P.2    Likas, A.3    Lagaris, I.E.4
  • 30
    • 2942748234 scopus 로고    scopus 로고
    • Real/binary-like coded versus binary coded genetic algorithms to automatically generate fuzzy knowledge bases: A comparative study
    • S. Achiche, L. Baron, and M. Balazinski, "Real/binary-like coded versus binary coded genetic algorithms to automatically generate fuzzy knowledge bases: A comparative study," Eng. Appl. Artif. Intell., vol. 17, no. 4, pp. 313-325, 2004.
    • (2004) Eng. Appl. Artif. Intell , vol.17 , Issue.4 , pp. 313-325
    • Achiche, S.1    Baron, L.2    Balazinski, M.3
  • 31
    • 0041780746 scopus 로고    scopus 로고
    • Feature selection for computer-aided polyp detection using genetic algorithms
    • Santa Clara, CA
    • M. T. Miller, A. K. Jerebko, J. D. Malley, and R. M. Summers, "Feature selection for computer-aided polyp detection using genetic algorithms," in Proc. SPIE, Santa Clara, CA, 2003, pp. 102-110.
    • (2003) Proc. SPIE , pp. 102-110
    • Miller, M.T.1    Jerebko, A.K.2    Malley, J.D.3    Summers, R.M.4
  • 32
    • 0002288402 scopus 로고
    • An experimental comparison of binary and floating point representations in genetic algorithms
    • San Mateo, CA
    • C. Z. Janikow and Z. Michalewicz, "An experimental comparison of binary and floating point representations in genetic algorithms," in Proc. 4th Int. Conf. Genetic Algorithms, San Mateo, CA, 1991, pp. 31-36.
    • (1991) Proc. 4th Int. Conf. Genetic Algorithms , pp. 31-36
    • Janikow, C.Z.1    Michalewicz, Z.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.