Analysis of nucleotide sequence of Iranian maize mosaic virus confirms its identity as a distinct nucleorhabdovirus

Archives of Virology

Volumn 153, Issue 6, 2008, Pages 1041-1047

  Massah, A ^a,c   Izadpanah, K ^a   Afsharifar, A R ^a   Winter, S ^b  

^a SHIRAZ UNIVERSITY   (Iran)

^b LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

^c ISFAHAN UNIVERSITY OF TECHNOLOGY   (Iran)

Author keywords

[No Author keywords available]

Indexed keywords

SPACER DNA; VIRUS PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CLASSIFICATION; GENETICS; IRAN; MAIZE; MOLECULAR GENETICS; MOSAIC VIRUS; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; PLANT VIRUS; POLYMERASE CHAIN REACTION; RHABDOVIRUS; VIROLOGY; VIRUS GENE; VIRUS GENOME;

AMINO ACID SEQUENCE; BASE SEQUENCE; DNA, INTERGENIC; GENES, VIRAL; GENOME, VIRAL; IRAN; MOLECULAR SEQUENCE DATA; MOSAIC VIRUSES; OPEN READING FRAMES; PHYLOGENY; PLANT VIRUSES; POLYMERASE CHAIN REACTION; RHABDOVIRIDAE; VIRAL PROTEINS; ZEA MAYS;

IRIS MILD MOSAIC VIRUS; MAIZE MOSAIC VIRUS; NUCLEORHABDOVIRUS; RHABDOVIRIDAE; TARO VEIN CHLOROSIS VIRUS; ZEA MAYS;

EID: 44449178199     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-008-0085-y     Document Type: Article

References (36)

1. Ammar ED, Gomez-Luengo RG, Gordon DT, Hogenhout SA (2005) Characterization of maize mosaic virus and comparison with Hawaiian and other isolates of maize mosaic virus (Rhabdoviridae). J Phytopathol 153:129-136
2. Chandrika R, Horikami SM, Smallwood S, Moyer SA (1995) Mutations in conserved domain I of the Sendai virus L polymerase protein uncouple transcription and replication. Virology 213:352-363
3. Choi TJ, Kuwata S, Koonin EV, Heaton LA, Jackson AO (1992) Structure of the L (polymerase) protein gene of sonchus yellow net virus. Virology 189:31-39
4. Choi TJ, Wagner JD, Jackson AO (1994) Sequence analysis of the trailer region of sonchus yellow net virus genomic RNA. Virology 202:33-40
5. Dhillon J, Cowley JA, Wang Y, Walker PJ (2000) RNA polymerase (L) gene and genome terminal sequences of ephemeroviruses bovine ephemeral fever virus and Adelaide River virus indicate a close relationship to vesiculoviruses. Virus Res 70:87-95
6. Dietzgen RG, Callaghan B, Wetzel T, Dale JL (2006) Completion of the genome sequence of Lettuce necrotic yellows virus, type species of the genus Cytorhabdovirus. Virus Res 118:16-22
7. Felsenstein J (1993) Phylip, phylogeny inference package, version 3.67. Department of Genetics, University of Washington, Seattle
8. Froussard P (1992) A random-PCR method (rPCR) to construct whole cDNA library from low amounts of RNA. Nucleic Acids Res 20:2900
9. Goldberg KB, Modrell B, Hillman BI, Heaton LA, Choi T, Jakcson AO (1991) Structure of the glycoprotein gene of sonchus yellow net virus, a plant rhabdovirus. Virology 185:32-38
10. Goodin MM, Austin J, Tobias R, Fujita M, Morales C, Jackson AO (2001) Interactions and nuclear import of the N and P proteins of sonchus yellow net virus, a plant nucleorhabdovirus. J Virol 75:9393-9406
11. Heaton LA, Hillman BI, Hunter BG, Zuidema D, Jackson AO (1989) Physical map of the genome of sonchus yellow net virus, a plant rhabdovirus with six genes and conserved gene junction sequences. Proc Natl Acad Sci USA 86:8665-8668
12. Hillman BI, Heaton LA, Hunter BG, Modrell B, Jackson AO (1990) Structure of the gene encoding the M1 protein of sonchus yellow net virus. Virology 179:201-207
13. Izadpanah K (1989) Purification and serology of the Iranian maize mosaic rhabdovirus. J Phytopathol 126:43-50
14. Izadpanah K, Ahmadi A, Parvin S, Jafari SA (1983) Transmission, particle size and additional hosts of the rhabdovirus causing maize mosaic in Shiraz, Iran. Phytopathol Z 107:283-288
15. Jackson AO, Dietzgen RG, Goodin MM, Bragg JN, Deng M (2005) Biology of plant rhabdoviruses. Annu Rev Phytopathol 43:623-660
16. Luo ZL, Fang RX (1998) Structural analysis of the rice yellow stunt rhabdovirus glycoprotein gene and its mRNA. Arch Virol 143:2453-2459
17. Luo Z, Chen X, Gao D, Fang R (1998) The gene 4 of rice yellow stunt rhabdovirus encodes the matrix protein. Virus Genes 16:277-280
18. Massah A, Izadpanah K, Lesemann DE (2006) Relationship of Iranian maize mosaic virus with insect vector and plant cells. Iran J Plant Pathol 42:151-160
19. Milne RG, Masenga V, Conti M (1986) Serological relationships between the nucleocapsids of some planthopper-borne rhabdoviruses of cereals. Intervirology 25:83-87
20. Müller R, Poch O, Delarue M, Bishop DHL, Bouloy M (1994) Rift valley fever virus L segment: correction of the sequence and possible functional role of newly identified regions conserved in RNA-dependent polymerases. J Gen Virol 75:1345-1352
21. Nault LR, Ammar ED (1989) Leafhopper and planthopper transmission of plant viruses. Annu Rev Entomol 34:503-539
22. Page RDM (1996) TREEVIEW: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12:357-358
23. Poch O, Sauvaget I, Delarue M, Tordo N (1989) Identification of four conserved motifs among the RNA-dependent polymerase encoding elements. EMBO J 8:3867-3874
24. Poch O, Blumberg BM, Bougueleret L, Tordo N (1990) Sequence comparison of five polymerases (L proteins) of unsegmented negative-strand RNA viruses: theoretical assignment of functional domains. J Gen Virol 71:1153-1162
25. Posthuma KI, Hong YG, Adams AN (2001) Molecular detection of strawberry crinkle virus. Acta Hortic 55:175-79
26. Reed SE, Tsai CW, Willie KJ, Redinbaug MG, Hogenhout SA (2005) Shotgun sequencing of the negative-sense RNA genome of the rhabdovirus maize mosaic virus. J Virol Methods 129:91-96
27. Revill P, Trinh X, Dale J, Harding R (2005) Taro vein chlorosis virus: characterization and variability of a new nucleorhabdovirus. J Gen Virol 86:491-499
28. Saitou N, Nei M (1987) The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
29. Scholthof KBG, Hillman BI, Modrell B, Heaton LA, Jackson AO (1994) Characterization and detection of sc4: a sixth gene encoded by sonchus yellow net virus. Virology 204:279-288
30. Shirako Y, Ehara Y (1985) Composition of northern cereal mosaic virus and its detection by enzyme-linked immunosorbent assay with anti-nucleocapsid serum. Phytopathology 75:453-457
31. Tanno F, Nakatsu A, Toriyama S, Kojima M (2000) Complete nucleotide sequence of northern cereal mosaic virus and its genome organization. Arch Virol 145:1373-1384
32. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
33. Tordo N, Benmansour A, Calisher C, Dietzgen RG, Fang RX, Jackson AO, Kurath G, Nadin-Davis S, Tesh RB, Walker PJ (2005) Family Rhabdoviridae. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) Virus taxonomy: eighth report of the international committee on taxonomy of viruses. Elsevier, Amsterdam, pp 623-644
34. Tsai CW, Redinbaug MG, Willie KJ, Reed S, Goddin M, Hogenhout SA (2005) Complete genome sequence and in planta subcellular localization of maize fine streak virus proteins. J Virol 79:5304-5314
35. Zuidema D, Heaton LA, Hanau R, Jackson AO (1986) Detection and sequence of plus strand leader RNA of sonchus yellow net virus, a plant rhabdovirus. Proc Natl Acad USA 83:5019-5023
36. Zuidema D, Heaton LA, Jakcson AO (1987) Structure of the nucleocapsid protein gene of sonchus yellow net virus. Virology 159:373-380