The genome browser at UCSC for locating genes, and much more!

Molecular Biotechnology

Volumn 38, Issue 3, 2008, Pages 269-275

  Bina, Minou ^a  

^a PURDUE UNIVERSITY   (United States)

Author keywords

Gene display; Gene mapping; Genome browsers; Landmarks in genomic DNA; The Human Genome Project

Indexed keywords

BINDING SITES; BIOASSAY; BIOCHEMISTRY; BIOCHIPS; DNA; DNA SEQUENCES; GENE EXPRESSION; GENES; MICROARRAYS; NUCLEIC ACIDS; OPTICAL PROJECTORS; ORGANIC ACIDS; TRANSCRIPTION;

ANNOTATED GENES; COMPARATIVE GENOMICS; COMPUTATIONAL MODELLING; DATA DISPLAY; EXPERIMENTAL DATA; GENE DISPLAY; GENE EXPRESSION PROFILING; GENE MAPPING; GENOME BROWSERS; GENOMIC DNA; GRAPHICAL DISPLAYS; LANDMARKS IN GENOMIC DNA; PROTEIN BINDINGS; QUALITY MAPS; STEP-BY-STEP PROCEDURES; THE HUMAN GENOME PROJECT; TRANSCRIPTION START SITES;

MAPS;

COMPLEMENTARY DNA; GENOMIC DNA; MESSENGER RNA;

AMINO ACID SEQUENCE; BIOCHIP; COMPARATIVE STUDY; COMPUTER ANALYSIS; DNA DETERMINATION; DNA SEQUENCE; GENE EXPRESSION PROFILING; GENE IDENTIFICATION; GENOME; GENOMICS; HUMAN GENOME; INFORMATION PROCESSING; MATHEMATICAL MODEL; PREDICTION; PROTEIN DNA BINDING; REVIEW; RNA SPLICING; SEARCH ENGINE; SINGLE NUCLEOTIDE POLYMORPHISM; TRANSCRIPTION INITIATION SITE; WEB BROWSER; BIOLOGY; CHROMOSOME MAP; COMPUTER PROGRAM; GENETICS; HUMAN; METHODOLOGY;

CHROMOSOME MAPPING; COMPUTATIONAL BIOLOGY; GENOME, HUMAN; GENOMICS; HUMANS; SOFTWARE;

EID: 44449162237     PISSN: 10736085     EISSN: None     Source Type: Journal    
DOI: 10.1007/s12033-007-9019-2     Document Type: Review

References (13)

1. F. S. Collins E. D. Green A. E. Guttmacher M. S. Guyer 2003 A vision for the future of genomics research Nature 422 835 847
2. D. L. Wheeler T. Barrett D. A. Benson S. H. Bryant K. Canese V. Chetvernin D. M. Church M. DiCuccio R. Edgar S. Federhen L. Y. Geer Y. Kapustin O. Khovayko D. Landsman D. J. Lipman T. L. Madden D. R. Maglott J. Ostell V. Miller K. D. Pruitt G. D. Schuler E. Sequeira S. T. Sherry K. Sirotkin A. Souvorov G. Starchenko R. L. Tatusov T. A. Tatusova L. Wagner E. Yaschenko 2007 Database resources of the National Center for Biotechnology Information Nucleic Acids Research 35 D5 D12
3. W. J. Kent C. W. Sugnet T. S. Furey K. M. Roskin T. H. Pringle A. M. Zahler D. Haussler 2002 The human genome browser at UCSC Genome Research 12 996 1006
4. R. M. Kuhn D. Karolchik A. S. Zweig H. Trumbower D. J. Thomas A. Thakkapallayil C. W. Sugnet M. Stanke K. E. Smith A. Siepel K. R. Rosenbloom B. Rhead B. J. Raney A. Pohl J. S. Pedersen F. Hsu A. S. Hinrichs R. A. Harte M. Diekhans H. Clawson G. Bejerano G. P. Barber R. Baertsch D. Haussler W. J. Kent 2007 The UCSC genome browser database, update 2007 Nucleic Acids Research 35 D668 D673
5. T. J. Hubbard B. L. Aken K. Beal B. Ballester M. Caccamo Y. Chen L. Clarke G. Coates F. Cunningham T. Cutts T. Down S. C. Dyer S. Fitzgerald J. Fernandez-Banet S. Graf S. Haider M. Hammond J. Herrero R. Holland K. Howe N. Johnson A. Kahari D. Keefe F. Kokocinski E. Kulesha D. Lawson I. Longden C. Melsopp K. Megy P. Meidl B. Ouverdin A. Parker A. Prlic S. Rice D. Rios M. Schuster I. Sealy J. Severin G. Slater D. Smedley G. Spudich S. Trevanion A. Vilella J. Vogel S. White M. Wood T. Cox V. Curwen R. Durbin X. M. Fernandez-Suarez P. Flicek A. Kasprzyk G. Proctor S. Searle J. Smith A. Ureta-Vidal E. Birney 2007 Ensembl 2007 Nucleic Acids Research 35 D610 D617
6. Kent, W. J. (2002). BLAT-the BLAST-like alignment tool. Genome Research, 12, 656-664. doi: 10.1101/gr.229202 Article published online before March 2002.
7. M. Bina 2006 Use of genome browsers to locate your favorite genes Methods in Molecular Biology 338 1 7
8. M. Bina 2006 Identification and mapping of paralogous genes on a known genomic DNA sequence Methods in Molecular Biology 338 21 29
9. M. Ashburner C. A. Ball J. A. Blake D. Botstein H. Butler J. M. Cherry A. P. Davis K. Dolinski S. S. Dwight J. T. Eppig M. A. Harris D. P. Hill L. Issel-Tarver A. Kasarskis S. Lewis J. C. Matese J. E. Richardson M. Ringwald G. M. Rubin G. Sherlock 2000 Gene ontology, tool for the unification of biology Nature Genetics 25 25 29 DOI10.1038/75556
10. Gene Ontology Consortium 2001 Creating the gene ontology resource, design and implementation Genome Research 11 1425 1433 DOI10.1101/gr.180801
11. ENCODE Project Consortium 2004 The ENCODE (ENCyclopedia Of DNA Elements) Project Science 306 636 640
12. ENCODE Project Consortium 2007 Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project Nature 447 799 816
13. D. J. Thomas K. R. Rosenbloom H. Clawson A. S. Hinrichs H. Trumbower B. J. Raney D. Karolchik G. P. Barber R. A. Harte J. Hillman-Jackson R. M. Kuhn B. L. Rhead K. E. Smith A. Thakkapallayil A. S. Zweig D. Haussler W. J. Kent 2007 The ENCODE Project at UC Santa Cruz Nucleic Acids Research 35 D663 D667