메뉴 건너뛰기




Volumn 105, Issue 15, 2008, Pages 5827-5832

DNA looping can enhance lysogenic CI transcription in phage lambda

Author keywords

Bacteriophage lambda; Flow cytometry; Gene regulation

Indexed keywords

CHLORIDE;

EID: 44449154784     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0705570105     Document Type: Article
Times cited : (51)

References (37)
  • 1
    • 4444293086 scopus 로고    scopus 로고
    • Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, 3rd Ed
    • Ptashne M (2004) A Genetic Switch: Phage Lambda Revisited. (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY), 3rd Ed.
    • (2004) A Genetic Switch: Phage Lambda Revisited
    • Ptashne, M.1
  • 2
    • 0033517148 scopus 로고    scopus 로고
    • Robustness of a gene regulatory circuit
    • Little JW, Shepley DP, Wert DW (1999) Robustness of a gene regulatory circuit. EMBO J 18:4299-4307.
    • (1999) EMBO J , vol.18 , pp. 4299-4307
    • Little, J.W.1    Shepley, D.P.2    Wert, D.W.3
  • 4
    • 0018782266 scopus 로고
    • Inactivation of prophage-lambda repressor in vivo
    • Bailone A, Levine A, Devoret R (1979) Inactivation of prophage-lambda repressor in vivo. J Mol Biol 131:553-572.
    • (1979) J Mol Biol , vol.131 , pp. 553-572
    • Bailone, A.1    Levine, A.2    Devoret, R.3
  • 5
    • 0018868527 scopus 로고
    • Gene-regulation at the right operator (OR) of bacteriophage-lambda. 3. Lambda-repressor directly activates gene-transcription
    • Meyer BJ, Ptashne M (1980) Gene-regulation at the right operator (OR) of bacteriophage-lambda. 3. Lambda-repressor directly activates gene-transcription. J Mol Biol 139:195-205.
    • (1980) J Mol Biol , vol.139 , pp. 195-205
    • Meyer, B.J.1    Ptashne, M.2
  • 6
    • 0033545416 scopus 로고    scopus 로고
    • Four dimers of lambda repressor bound to two suitably spaced pairs of lambda operators form octamers and DNA loops over large distances
    • Revet B, von Wilcken-Bergmann B, Bessert H, Barker A, Muller-Hill B (1999) Four dimers of lambda repressor bound to two suitably spaced pairs of lambda operators form octamers and DNA loops over large distances. Curr Biol 9:151-154.
    • (1999) Curr Biol , vol.9 , pp. 151-154
    • Revet, B.1    von Wilcken-Bergmann, B.2    Bessert, H.3    Barker, A.4    Muller-Hill, B.5
  • 8
    • 0036138908 scopus 로고    scopus 로고
    • A variant of yellow fluorescent protein with fast and efficient maturation for cell-biological applications
    • Nagai T, Ibata K, Park ES, Kubota M, Mikoshiba K, Miyawaki A (2002) A variant of yellow fluorescent protein with fast and efficient maturation for cell-biological applications. Nat Biotechnol 20:87-90.
    • (2002) Nat Biotechnol , vol.20 , pp. 87-90
    • Nagai, T.1    Ibata, K.2    Park, E.S.3    Kubota, M.4    Mikoshiba, K.5    Miyawaki, A.6
  • 9
    • 0026736324 scopus 로고
    • Translation of the prophage-lambda CI transcript
    • Shean CS, Gottesman ME (1992) Translation of the prophage-lambda CI transcript. Cell 70:513-522.
    • (1992) Cell , vol.70 , pp. 513-522
    • Shean, C.S.1    Gottesman, M.E.2
  • 10
    • 0032552492 scopus 로고    scopus 로고
    • Construction and characterization of F plasmid-based expression vectors
    • Jones KL, Keasling JD (1998) Construction and characterization of F plasmid-based expression vectors. Biotechnol Bioeng 59:659-665.
    • (1998) Biotechnol Bioeng , vol.59 , pp. 659-665
    • Jones, K.L.1    Keasling, J.D.2
  • 11
    • 0035890132 scopus 로고    scopus 로고
    • Octamerization of lambda CI repressor is needed for effective repression of P-RM and efficient switching from lysogeny
    • Dodd IB, Perkins AJ, Tsemitsidis D, Egan JB (2001) Octamerization of lambda CI repressor is needed for effective repression of P-RM and efficient switching from lysogeny. Genes Dev 15:3013-3022.
    • (2001) Genes Dev , vol.15 , pp. 3013-3022
    • Dodd, I.B.1    Perkins, A.J.2    Tsemitsidis, D.3    Egan, J.B.4
  • 12
    • 0022851259 scopus 로고
    • Energetics of cooperative protein DNA interactions - comparison between quantitative deoxyribonuclease footprint titration and filter binding
    • Senear DF, Brenowitz M, Shea MA, Ackers GK (1986) Energetics of cooperative protein DNA interactions - comparison between quantitative deoxyribonuclease footprint titration and filter binding. Biochemistry 25:7344-7354.
    • (1986) Biochemistry , vol.25 , pp. 7344-7354
    • Senear, D.F.1    Brenowitz, M.2    Shea, M.A.3    Ackers, G.K.4
  • 13
    • 0026567857 scopus 로고
    • Site-specific enthalpic regulation of DNA-transcription at bacteriophage-lambda OR
    • Koblan KS, Ackers GK (1992) Site-specific enthalpic regulation of DNA-transcription at bacteriophage-lambda OR. Biochemistry 31:57-65.
    • (1992) Biochemistry , vol.31 , pp. 57-65
    • Koblan, K.S.1    Ackers, G.K.2
  • 14
    • 0018817388 scopus 로고
    • Gene-regulation at the right operator (OR) of bacteriophage-lambda. 2. OR1, OR2, and OR3 - their roles in mediating the effects of repressor and cro
    • Meyer BJ, Maurer R, Ptashne M (1980) Gene-regulation at the right operator (OR) of bacteriophage-lambda. 2. OR1, OR2, and OR3 - their roles in mediating the effects of repressor and cro. J Mol Biol 139:163-194.
    • (1980) J Mol Biol , vol.139 , pp. 163-194
    • Meyer, B.J.1    Maurer, R.2    Ptashne, M.3
  • 15
    • 0018850588 scopus 로고
    • Gene-regulation at the right operator (OR) of bacteriophage-lambda
    • Maurer R, Meyer BJ, Ptashne M (1980) Gene-regulation at the right operator (OR) of bacteriophage-lambda. J Mol Biol 139:147-161.
    • (1980) J Mol Biol , vol.139 , pp. 147-161
    • Maurer, R.1    Meyer, B.J.2    Ptashne, M.3
  • 16
    • 0030602875 scopus 로고    scopus 로고
    • Identification of an UP element within the IHF binding site at the P(L)1-P(L)2 tandem promoter of bacteriophage lambda
    • Giladi H, Murakami K, Ishihama A, Oppenheim AB (1996) Identification of an UP element within the IHF binding site at the P(L)1-P(L)2 tandem promoter of bacteriophage lambda. J Mol Biol 260:484-491.
    • (1996) J Mol Biol , vol.260 , pp. 484-491
    • Giladi, H.1    Murakami, K.2    Ishihama, A.3    Oppenheim, A.B.4
  • 17
    • 0022429106 scopus 로고
    • The or control-system of bacteriophage-lambda - a physical-chemical model for gene-regulation
    • Shea MA, Ackers GK (1985) The or control-system of bacteriophage-lambda - a physical-chemical model for gene-regulation. J Mol Biol 181:211-230.
    • (1985) J Mol Biol , vol.181 , pp. 211-230
    • Shea, M.A.1    Ackers, G.K.2
  • 18
    • 4444360812 scopus 로고    scopus 로고
    • Sequence tolerance of the phage lambda P-RM promoter: Implications for evolution of gene regulatory circuitry
    • Michalowski CB, Short MD, Little JW (2004) Sequence tolerance of the phage lambda P-RM promoter: Implications for evolution of gene regulatory circuitry. J Bacteriol 186:7988-7999.
    • (2004) J Bacteriol , vol.186 , pp. 7988-7999
    • Michalowski, C.B.1    Short, M.D.2    Little, J.W.3
  • 19
    • 0025309753 scopus 로고
    • Elongation by it Escherichia coli RNA-polymerase is blocked in vitro by a site-specific DNA-binding protein
    • Pavco PA, Steege DA (1990) Elongation by it Escherichia coli RNA-polymerase is blocked in vitro by a site-specific DNA-binding protein. J Biol Chem 265:9960-9969.
    • (1990) J Biol Chem , vol.265 , pp. 9960-9969
    • Pavco, P.A.1    Steege, D.A.2
  • 20
    • 1842610540 scopus 로고    scopus 로고
    • Mfd, the bacterial transcription repair coupling factor: Translocation, repair and termination
    • Roberts J, Park JS (2004) Mfd, the bacterial transcription repair coupling factor: Translocation, repair and termination. Curr Opin Microbiol 7:120-125.
    • (2004) Curr Opin Microbiol , vol.7 , pp. 120-125
    • Roberts, J.1    Park, J.S.2
  • 21
    • 0033368475 scopus 로고    scopus 로고
    • Messenger RNA stability and its role in control of gene expression in bacteria and phages
    • Grunberg-Manago M (1999) Messenger RNA stability and its role in control of gene expression in bacteria and phages. Annu Rev Genet 33:193-227.
    • (1999) Annu Rev Genet , vol.33 , pp. 193-227
    • Grunberg-Manago, M.1
  • 23
    • 34249862579 scopus 로고    scopus 로고
    • The C-terminal domain of the Escherichia coli RNA polymerase subunit plays a role in the CI-dependent activation of the bacteriophage lambda PM promoter
    • Kedzierska B, et al. (2007) The C-terminal domain of the Escherichia coli RNA polymerase subunit plays a role in the CI-dependent activation of the bacteriophage lambda PM promoter. Nucleic Acids Res 35:2311-2320.
    • (2007) Nucleic Acids Res , vol.35 , pp. 2311-2320
    • Kedzierska, B.1
  • 24
    • 0027227486 scopus 로고
    • Modulation of P(RM) activity by the lambda-P(R) promoter in both the presence and absence of repressor
    • Fong R SC, Woody S, Gussin GN (1993) Modulation of P(RM) activity by the lambda-P(R) promoter in both the presence and absence of repressor. J Mol Biol 232:792-804.
    • (1993) J Mol Biol , vol.232 , pp. 792-804
    • Fong, R.S.1    Woody, S.2    Gussin, G.N.3
  • 25
    • 0035861984 scopus 로고    scopus 로고
    • Crystal structure of the lambda repressor c-terminal domain octamer
    • Bell CE, Lewis M (2001) Crystal structure of the lambda repressor c-terminal domain octamer. J Mol Biol 314:1127-1136.
    • (2001) J Mol Biol , vol.314 , pp. 1127-1136
    • Bell, C.E.1    Lewis, M.2
  • 26
    • 0034724332 scopus 로고    scopus 로고
    • DNA sequence dependent and independent conformational changes in multipartite operator recognition by lambda-repressor
    • Deb S, Bandyopadhyay S, Roy S (2000) DNA sequence dependent and independent conformational changes in multipartite operator recognition by lambda-repressor. Biochemistry 39:3377-3383.
    • (2000) Biochemistry , vol.39 , pp. 3377-3383
    • Deb, S.1    Bandyopadhyay, S.2    Roy, S.3
  • 27
    • 0035104605 scopus 로고    scopus 로고
    • Papain does not cleave operator-bound lambda repressor: Structural characterization of the carboxy terminal domain and the hinge
    • Ghosh K, Chattopadhyaya R (2001) Papain does not cleave operator-bound lambda repressor: Structural characterization of the carboxy terminal domain and the hinge. J Biomol Struct Dyn 18:557-567.
    • (2001) J Biomol Struct Dyn , vol.18 , pp. 557-567
    • Ghosh, K.1    Chattopadhyaya, R.2
  • 28
    • 34948874664 scopus 로고    scopus 로고
    • Cro's role in the CI-cro bistable switch is critical for lambda's transition from lysogeny to lytic development
    • Schubert RA, Dodd IB, Egan JB, Shearwin KE (2007) Cro's role in the CI-cro bistable switch is critical for lambda's transition from lysogeny to lytic development. Genes Dev 21:2461-2472.
    • (2007) Genes Dev , vol.21 , pp. 2461-2472
    • Schubert, R.A.1    Dodd, I.B.2    Egan, J.B.3    Shearwin, K.E.4
  • 29
    • 0032699238 scopus 로고    scopus 로고
    • Chromosomal integration of heterologous DNA in Escherichia coli with precise removal of markers and replicons used during construction
    • Martinez-Morales F, Borges AC, Martinez K, Shanmugam KT, Ingram LO (1999) Chromosomal integration of heterologous DNA in Escherichia coli with precise removal of markers and replicons used during construction. J Bacteriol 181:7143-7148.
    • (1999) J Bacteriol , vol.181 , pp. 7143-7148
    • Martinez-Morales, F.1    Borges, A.C.2    Martinez, K.3    Shanmugam, K.T.4    Ingram, L.O.5
  • 30
    • 3843146246 scopus 로고    scopus 로고
    • An efficient one-step site-directed and site-saturation mutagenesis protocol
    • Zheng L, Baumann U, Reymond JL (2004) An efficient one-step site-directed and site-saturation mutagenesis protocol. Nucleic Acids Res 32:e115.
    • (2004) Nucleic Acids Res , vol.32
    • Zheng, L.1    Baumann, U.2    Reymond, J.L.3
  • 31
    • 0016283409 scopus 로고
    • Culture medium for enterobacteria
    • Neidhardt F, Bloch P, Smith D (1974) Culture medium for enterobacteria. J Bacteriol 119:736-747.
    • (1974) J Bacteriol , vol.119 , pp. 736-747
    • Neidhardt, F.1    Bloch, P.2    Smith, D.3
  • 32
    • 0018782269 scopus 로고
    • Cellular-levels of the prophage-lambda and 434-repressors
    • Levine A, Bailone A Devoret R (1979) Cellular-levels of the prophage-lambda and 434-repressors. J Mol Biol 131:655-661.
    • (1979) J Mol Biol , vol.131 , pp. 655-661
    • Levine, A.1    Bailone, A.2    Devoret, R.3
  • 35
    • 5644304343 scopus 로고    scopus 로고
    • Nonspecific binding of the O-R repressors CI and cro of bacteriophage lambda
    • Bakk A, Metzler R (2004) Nonspecific binding of the O-R repressors CI and cro of bacteriophage lambda. J Theor Biol 231:525-533.
    • (2004) J Theor Biol , vol.231 , pp. 525-533
    • Bakk, A.1    Metzler, R.2
  • 36
    • 0025939212 scopus 로고
    • Energetics of subunit dimerization in bacteriophage-lambda CI repressor - linkage to protons, temperature, and KCl
    • Koblan KS, Ackers GK (1991) Energetics of subunit dimerization in bacteriophage-lambda CI repressor - linkage to protons, temperature, and KCl. Biochemistry 30:7817-7821.
    • (1991) Biochemistry , vol.30 , pp. 7817-7821
    • Koblan, K.S.1    Ackers, G.K.2
  • 37
    • 0037292374 scopus 로고    scopus 로고
    • A comparative three-dimensional model of the carboxyl-terminal domain of the lambda repressor and its use to build intact repressor tetramer models bound to adjacent operator sites
    • Chattopadhyaya R, Ghosh K (2003) A comparative three-dimensional model of the carboxyl-terminal domain of the lambda repressor and its use to build intact repressor tetramer models bound to adjacent operator sites. J Struct Biol 141:103-114.
    • (2003) J Struct Biol , vol.141 , pp. 103-114
    • Chattopadhyaya, R.1    Ghosh, K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.