Initial binding process of the membrane insertase YidC with its substrate Pf3 coat protein is reversible

Biochemistry

Volumn 47, Issue 22, 2008, Pages 6052-6058

  Gerken, Uwe ^a   Erhardt, Dagmar ^a   Bär, Gerda ^a   Ghosh, Robin ^b   Kuhn, Andreas ^a  

^a UNIVERSITY OF HOHENHEIM   (Germany)

^b UNIVERSITY OF STUTTGART   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BINDING SITES; DISSOCIATION; ESCHERICHIA COLI; FLUORESCENCE SPECTROSCOPY; PH EFFECTS; QUENCHING;

FLUORESCENCE QUENCHING; HYDROPHOBIC INTERACTIONS;

ENZYME KINETICS;

2 PROPANOL; 8 ANILINO 1 NAPHTHALENESULFONIC ACID; BUFFER; COAT PROTEIN; DODECYLPHOSPHORYLCHOLINE; INSERTASE; MEMBRANE ENZYME; PROTEIN PF3; PROTEIN YIDC;

ARTICLE; CONFORMATIONAL TRANSITION; DISSOCIATION CONSTANT; ENZYME SUBSTRATE COMPLEX; ESCHERICHIA COLI; FLUORESCENCE SPECTROSCOPY; HYDROPHOBICITY; NONHUMAN; PH; PRIORITY JOURNAL; PROTEIN PROTEIN INTERACTION; PROTEIN PURIFICATION;

ANILINO NAPHTHALENESULFONATES; BINDING SITES; CAPSID PROTEINS; CELL MEMBRANE; ESCHERICHIA COLI PROTEINS; FLUORESCENCE RESONANCE ENERGY TRANSFER; HYDROGEN-ION CONCENTRATION; HYDROPHOBICITY; KINETICS; MEMBRANE TRANSPORT PROTEINS; MODELS, BIOLOGICAL; TRYPTOPHAN;

ESCHERICHIA COLI;

EID: 44449150447     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi800116t     Document Type: Article

References (20)

1. Veenendaal, A. K., van der Does, C., and Driessen, A. J. (2004) The protein-conducting channel SecYEG. Biochim. Biophys. Acta 1694, 81-95.
2. Kuhn, A., Stuart, R., Henry, R., and Dalbey, R. E. (2003) The Alb3/Oxa1/YidC protein family: Membrane-localized chaperones facilitating membrane protein insertion? Trends Cell Biol. 13, 510-516.
3. Samuelson, J., Chen, M., Jiang, F., Wiedmann, M., Brunner, J., Kuhn, A., Phillips, G., and Dalbey, R. E. (2000) YidC is required for membrane protein insertion in E. coli. Nature 406, 637-641.
4. 0 ATP synthase subunit c is a substrate of the novel YidC pathway for membrane protein biogenesis. J. Cell Biol. 165, 213-222.
5. Celebi, N., Yi, L., Facey, S. J., Kuhn, A., and Dalbey, R. E. (2006) Membrane biogenesis of subunit II of cytochrome bo oxidase: Contrasting requirements for insertion of N-terminal and C-terminal domains. J. Mol. Biol. 357, 1428-1436.
6. Chen, M., Samuelson, J. C., Jiang, F., Müller, M, Kuhn, A., and Dalbey, R. E. (2002) Direct interaction of YidC with the Sec-independent Pf3 coat protein during its membrane protein insertion. J. Biol. Chem. 277, 7670-7675.
7. Altamura, N., Capitanio, N., Bonnefoy, N., Papa, S., and Dujardin, G. (1996) The Saccharomyces cerevisiae OXA1 gene is required for the correct assembly of cytochrome c oxidase and oligomycin-sensitive ATP synthase. FEBS Lett. 382, 111-115.
8. Jiang, F., Chen, M., Yi, L., de Gier, J. W., Kuhn, A., and Dalbey, R. E. (2003) Defining the regions of Escherichia coli YidC that contribute to activity. J. Biol. Chem. 278, 48965-48972.
9. Kiefer, D., and Kuhn, A. (2007) YidC as an essential and multifunctional component in membrane protein assembly. Int. Rev. Cytol. 259, 113-138.
10. Xie, K., Kiefer, D., Nagler, G., Dalbey, R. E., and Kuhn, A. (2006) Different regions of the nonconserved large periplasmic domain of Escherichia coli YidC are involved in the SecF interaction and membrane insertase activity. Biochemistry 45, 13401-13408.
11. Serek, J., Bauer-Manz, G., Struhalla, G., van den Berg, L., Kiefer, D., Dalbey, R. E., and Kuhn, A. (2004) Escherichia coli YidC is a membrane insertase for Sec-independent proteins. EMBO J. 23, 295-301.
12. Stryer, L. (1965) The interaction of a naphthalene dye with apomyoglobin and apohemoglobin. J. Mol. Biol. 13, 482-495.
13. Welsh, L. C., Symmons, M. F., Sturtevant, J. M., Marvin, D. A., and Perham, R. N. (1998) Structure of the capsid of Pf3 filamentous phage determined from X-ray fibre diffraction data at 3.1 Å resolution. J. Mol. Biol. 28, 155-177.
14. 31P solid-state NMR investigations of the Pf3 coat protein in oriented phospholipid bilayers. FEBS J. 273, 817-828.
15. Teale, F. W., and Weber, G. (1957) Ultraviolet fluorescence of the aromatic amino acids. Biochem. J. 65, 476-482.
16. Vivian, J. T., and Callis, P. R. (2001) Mechanisms of tryptophan fluorescence shifts in proteins. Biophys. J. 80, 2093-2109.
17. Lakowicz, J. R. (1999) Principles of Fluorescence Spectroscopy, 2nd ed., Kluwer Academics/Plenum Publisher, New York.
18. Papanikou, E., Karamanou, S., Baud, C., Frank, M., Sianidis, G., Keramisanou, D., Kalodimos, C. G., Kuhn, A., and Economou, A. (2005) Identification of the preprotein binding domain of SecA. J. Biol. Chem. 280, 43209-43217.
19. Ravaud, S., Stjepanovi, G., Wild, K., and Sinning, I. (2008) The Crystal Structure of the Periplasmic Domain of the Escherichia coli Membrane Protein Insertase YidC Contains a Substrate Binding Cleft. J. Biol. Chem. 283, 9350-9358.
20. Oliver, D. C., and Paetzel, M. (2008) Crystal structure of the major periplasmic domain of the bacterial membrane protein assembly facilitator YidC. J. Biol. Chem. 283, 5208-5216.