MH class IIα polymorphism in local and global adaptation of Arctic charr (Salvelinus alpinus L.)

Immunogenetics

Volumn 60, Issue 6, 2008, Pages 325-337

  Conejeros, Pablo ^a   Phan, Anna ^a   Power, Michael ^a   Alekseyev, Sergey ^a   O'Connell, Michael ^a   Dempson, Brian ^a   Dixon, Brian ^a  

^a UNIVERSITY OF WATERLOO   (Canada)

Author keywords

Arctic charr; Class II alpha; Major histocompatibility complex; Polymorphism; Populations; Salvelinus alpinus

Indexed keywords

MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 2; MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 2ALPHA; MITOCHONDRIAL DNA;

ARTICLE; CONTROLLED STUDY; DNA POLYMORPHISM; DNA SEQUENCE; FRESHWATER FISH; GENE FREQUENCY; GENETIC DRIFT; GENETIC VARIABILITY; HAPLOTYPE; LOCAL ADAPTATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POPULATION DIFFERENTIATION; PRIORITY JOURNAL; RETROPOSON; SALVELINUS ALPINUS; ALLELE; ANIMAL; CLASSIFICATION; GENE; GENETIC POLYMORPHISM; GENETICS; IMMUNOLOGY; INTRON; MOLECULAR GENETICS; TROUT;

SALMONIDAE; SALVELINUS ALPINUS; SALVELINUS FONTINALIS;

ALLELES; ANIMALS; BASE SEQUENCE; GENES, MHC CLASS II; INTRONS; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMORPHISM, GENETIC; RETROELEMENTS; TROUT;

EID: 44449108600     PISSN: 00937711     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00251-008-0290-6     Document Type: Article

References (56)

1. Alekseyev SS, Samusenok VP, Matveev AN, Pichugin MY (2002) Diversification, sympatric speciation, and trophic polymorphism of arctic charr, Salvelinus alpinus complex, in Transbaikalia. Environ Biol Fishes 64:97-114
2. Allendorf F, Thorgaard G (1984) Tetraploidy and the evolution of salmonid fishes. In: Turner BJ (ed) Evolutionary genetics of fishes. Plenum, New York
3. Behnke RJ (1984) Organizing the diversity of the Arctic charr complex. Biology of the Arctic Charr. In: Proceedings of the International Symposium on Arctic Charr, pp. 3-21, University of Manitoba Press
4. Bernatchez L, Landry C (2003) MHC studies in nonmodel vertebrates: what have we learned about natural selection in 15 years. J Evol Biol 16:363-377
5. Bernatchez L, Rhydderch J, Kircheis F (2002) Microsatellite gene diversity analysis in landlocked Arctic Charr from Maine. Trans Am Fish Soc 131:1106-1118
6. Bonneaud C, Chastel O, Federici P, Westerdahl H, Sorci G (2006) Complex Mhc-based mate choice in a wild passerine. Proc Biol Sci 273:1111-1116
7. Brown JH, Jardetzky TS, Gorga JC, Stern LJ, Urban RG, Strominger JL, Wiley DC (1993) Three-dimensional structure of the human class II histocompatibility antigen HLA-DR1. Nature 364:33-39
8. Brunner PC, Douglas MR, Osinov A, Wilson CC, Bernatchez L (2001) Holarctic phylogeography of Arctic charr (Salvelinus alpinus L.) inferred from mitochondrial DNA sequences. Evolution Int J Org Evolution 55:573-586
9. Bryja J, Galan M, Charbonnel N, Cosson JF (2006) Duplication, balancing selection and trans-species evolution explain the high levels of polymorphism of the DQA MHC class II gene in voles (Arvicolinae). Immunogenetics 58:191-202
10. Consuegra S, Megens HJ, Leon K, Stet RJ, Jordan WC (2005a) Patterns of variability at the major histocompatibility class II alpha locus in Atlantic salmon contrast with those at the class I locus. Immunogenetics 57:16-24
11. Consuegra S, Megens HJ, Schaschl H, Leon K, Stet RJ, Jordan WC (2005b) Rapid evolution of the MH class I locus results in different allelic compositions in recently diverged populations of Atlantic salmon. Mol Biol Evol 22:1095-1106
12. Dawkins R, Leelayuwat C, Gaudieri S, Tay G, Hui J, Cattley S, Martinez P, Kulski J (1999) Genomics of the major histocompatibility complex: haplotypes, duplication, retroviruses and disease. Immunol Rev 167:275-304
13. de Eyto E, McGinnity P, Consuegra S, Coughlan J, Tufto J, Farrell K, Megens HJ, Jordan W, Cross T, Stet RJ (2007) Natural selection acts on Atlantic salmon major histocompatibility (MH) variability in the wild. Proc Biol Sci 274:861-869
14. Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792-1797
15. Elliott J, Baroudy E (1995) The ecology of Arctic charr, Salvelinus alpinus, and brown trout, Salmo trutta, in Windermere (northwest England). Nord J Freshw Res 71:33-48
16. Excoffier L, Laval G, Schneider S (2005) Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evol Bioinform Online 1:47-50
17. Frost W (1965) Breeding habits of Windermere charr, Salvelinus willughbii (Gunther), and their bearing on speciation of these fish. Proc R Soc Lond. Series B Biol Sci 163:232-284
18. Gladden J, Maiers B, Carmichael T, Reist J (1995) Mitochondrial DNA control region sequence variation in arctic char (Salvelinus alpinus (L.)). Canadian data report of fisheries and aquatic sciences 968. Central and Arctic Region, Department of Fisheries and Oceans, Winnipeg
19. Goldstein DB, Pollock DD (1997) Launching microsatellites: a review of mutation processes and methods of phylogenetic interference. J Hered 88:335-342
20. Grimholt U, Getahun A, Hermsen T, Stet RJ (2000) The major histocompatibility class II alpha chain in salmonid fishes. Dev Comp Immunol 24:751-763
21. Grimholt U, Larsen S, Nordmo R, Midtlyng P, Kjoeglum S, Storset A, Saebo S, Stet RJ (2003) MHC polymorphism and disease resistance in Atlantic salmon (Salmo salar); facing pathogens with single expressed major histocompatibility class I and class II loci. Immunogenetics 55:210-219
22. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 41:95-98
23. Hansen JD, Strassburger P, Du Pasquier L (1996) Conservation of an alpha 2 domain within the teleostean world, MHC class I from the rainbow trout Oncorhynchus mykiss. Dev Comp Immunol 20:417-425
24. Hardee JJ, Godwin U, Benedetto R, McConnell TJ (1995) Major histocompatibility complex class II A gene polymorphism in the striped bass. Immunogenetics 41:229-238
25. Hesthagen T, Hindar K, Jonsson B (1995) Effects of acidification on normal and dwarf Arctic charr Salvelinus alpinus (L.) in a Norwegian lake. Biol Conserv 74:115-123
26. Johnson L (1980) The Arctic charr, Salvelinus alpinus. In: Balon EK (ed) Charrs: salmonid fishes of the genus Salvelinus. Dr. W. Junk, The Hague, pp 19-98
27. Kido Y, Saitoh M, Murata S, Okada N (1995) Evolution of the active sequences of the HpaI short interspersed elements. J Mol Evol 41:986-995
28. Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111-120
29. Klein J (1987) Origin of major histocompatibility complex polymorphism: the trans-species hypothesis. Hum Immunol 19:155-162
30. Klemetsen A, Amundsen P, Dempson B, Jonsson B, Jonsson N, O'Connell F, Mortensen E (2003) Atlantic salmon Salmo salar L., brown trout Salmo trutta L. and Arctic charr Salvelinus alpinus (L.): a review of aspects of their life histories. Ecol Freshw Fish 12:1-59
31. Knudsen R (1995) Relationships between habitat, prey selection and parasite infection in arctic charr (Salvelinus alpinus). Nord J Freshw Res 71:333-344
32. Kornfield I, Kircheis F (1994) Mitochondrial DNA and conservation of an aboriginal arctic car (Salvelinus alpinus oquassa) from flood pond, Maine. Can J Fish Aquat Sci 51:62-67
33. Kulski JK, Shiina T, Anzai T, Kohara S, Inoko H (2002) Comparative genomic analysis of the MHC: the evolution of class I duplication blocks, diversity and complexity from shark to man. Immunol Rev 190:95-122
34. Kumar S, Tamura K, Nei M (2004) MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5:150-163
35. Lamont SJ (1998) Impact of genetics on disease resistance. Poult Sci 77:1111-1118
36. Lohm J, Grahn M, Langefors A, Andersen O, Storset A, von Schantz T (2002) Experimental evidence for major histocompatibility complex-allele-specific resistance to a bacterial infection. Proc Biol Sci 269:2029-2033
37. Maiers P, Gladden B, Carmichael T, Reist J (1995) Survey of restriction fragment length polymorphism variation in Arctic char Salvelinus alpinus (L) mitochondrial DNA. Data report from the Central and Arctic Region. Central Arctic Region, Department of Fisheries and Oceans, Winnipeg
38. Maynard S, Haigh J (1974) The hitchhiking effect of a favorable gene. Genet Res 23:23-35
39. Messaoudi I, Guevara Patino JA, Dyall R, LeMaoult J, Nikolich-Zugich J (2002) Direct link between mhc polymorphism, T cell avidity, and diversity in immune defense. Science 298:1797-1800
40. Miller KM, Withler RE (1997) Mhc diversity in Pacific salmon: population structure and trans-species allelism. Hereditas 127:83-95
41. Miller KM, Li S, Ming TJ, Kaukinen KH, Schulze AD (2006) The salmonid MHC class I: more ancient loci uncovered. Immunogenetics 58:571-589
42. Nei M, Gojobori T (1986) Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol 3:418-426
43. Nordeng H (1993) Solution to the "charr problem" based on Arctic Charr (Salvelinus alpinus) in Norway. Can J Fish Aquat Sci 40:1372-1387
44. Ono H, O'HUigin C, Tichy H, Klein J (1993) Major-histocompatibility- complex variation in two species of cichlid fishes from Lake Malawi. Mol Biol Evol 10:1060-1072
45. Piertney SB, Oliver MK (2006) The evolutionary ecology of the major histocompatibility complex. Heredity 96:7-21
46. Reche PA, Reinherz EL (2003) Sequence variability analysis of human class I and class II MHC molecules: functional and structural correlates of amino acid polymorphisms. J Mol Biol 331:623-641
47. Sambrook J, Russell DW (2001) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor
48. Satta Y (1997) Effects of intra-locus recombination of HLA polymorphism. Hereditas 127:105-112
49. Savvaitova K (1995) Patterns of diversity and processes of speciation in Arctic Charr. Nord J Freshw Res 71:81-91
50. Schaschl H, Suchentrunk F, Hammer S, Goodman SJ (2005) Recombination and the origin of sequence diversity in the DRB MHC class II locus in chamois (Rupicapra spp.). Immunogenetics 57:108-115
51. Skulason S, Snorrason S, Noakes D, Ferguson M, Malmquist H (1989) Segregation in spawning and early life history among polymorphic Arctic charr, Salvelinus alpinus, in Thingvallavatn, Iceland. J Fish Biol 37(Suppl. A):225-232
52. Steinmetz M, Hood L (1983) Genes of the major histocompatibility complex in mouse and man. Science 222:727-733
53. Stet RJ, de Vries B, Mudde K, Hermsen T, van Heerwaarden J, Shum BP, Grimholt U (2002) Unique haplotypes of co-segregating major histocompatibility class II A and class II B alleles in Atlantic salmon (Salmo salar) give rise to diverse class II genotypes. Immunogenetics 54:320-331
54. Takasaki N, Murata S, Saitoh M, Kobayashi T, Park L, Okada N (1994) Species-specific amplification of tRNA-derived short interspersed repetitive elements (SINEs) by retroposition: a process of parasitization of entire genomes during the evolution of salmonids. Proc Natl Acad Sci USA 91:10153-10157
55. Volpe JP, Ferguson MM (1996) Molecular genetic examination of the polymorphic Arctic charr Salvelinus alpinus of Thingvallavatn, Iceland. Mol Ecol 5:763-772
56. Wilson AJ, Gislason D, Skulason S, Snorrason SS, Adams CE, Alexander G, Danzmann RG, Ferguson MM (2004) Population genetic structure of Arctic charr, Salvelinus alpinus from northwest Europe on large and small spatial scales. Mol Ecol 13:1129-1142