Transcriptional regulation of changes in growth, cell cycle, and gene expression of Saccharomyces cerevisiae due to changes in buoyancy

Biotechnology and Bioengineering

Volumn 100, Issue 2, 2008, Pages 334-343

  Coleman, Chasity B ^a,b   Allen, Patricia L ^a   Valles, James M ^c   Hammond, Timothy G ^a,b,d  

^a TULANE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b TULANE UNIVERSITY HEALTH SCIENCES CENTER   (United States)

^c BROWN UNIVERSITY   (United States)

^d VETERANS AFFAIRS MEDICAL CENTER   (United States)

Author keywords

Deletion series; Ficoll; Magnetic trap; Suspension culture; Yeast

Indexed keywords

CELL GROWTH; CONCENTRATION (PROCESS); MAGNETIC FIELD EFFECTS; TRANSCRIPTION;

DELETION SERIES; MAGNETIC TRAPS; TRANSCRIPTIONAL REGULATION;

YEAST;

FICOLL; GREEN FLUORESCENT PROTEIN; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR MSN4; TRANSCRIPTION FACTOR SFP1;

ARTICLE; CELL CYCLE; CELL GROWTH; CONCENTRATION RESPONSE; GENE DELETION; GENE EXPRESSION; NONHUMAN; OSMOLALITY; SACCHAROMYCES CEREVISIAE; STRAIN DIFFERENCE; TRANSCRIPTION REGULATION; WILD TYPE;

ADAPTATION, PHYSIOLOGICAL; CELL CYCLE; CELL PROLIFERATION; GENE EXPRESSION REGULATION; GRAVITATION; SACCHAROMYCES CEREVISIAE; TRANS-ACTIVATION (GENETICS);

SACCHAROMYCES CEREVISIAE;

EID: 44449093635     PISSN: 00063592     EISSN: 10970290     Source Type: Journal    
DOI: 10.1002/bit.21748     Document Type: Article

References (45)

1. Amersham Biosciences. 2001. Ficoll PM 70, Ficoll PM 400. Product data sheet. 1-6.
2. Archimedes' principle. 2007. In Encyclopaedia Britannica. Retrieved June 11, 2007, from Encyclopaedia Britannica Online: http://www.britannicacom/eb/article-9009286.
3. Arnold WN, Lacy JS. 1977. Permeability of the cell envelope and osmotic behavior in Saccharomyces cerevisiae. J Bacteriol 131(2):564-571.
4. Berry MV, Geim AK. 1997. Of flying frogs and levitrons. Eur J Phys 18:307-313.
5. Bose S, Dutko JA, Zitomer RS. 2005. Genetic factors that regulate the attenuation of the general stress response of yeast. Genetics 169:1215-1226.
6. Carlson CR, Grallert B, Bermander R, Stokke T, Boye E. 1997. Measurement of nuclear DNA content in fission yeast by flow cytometry. Yeast 13(14):1329-1335.
7. Causton HC, Ren B, Koh SS, Harbison CT, Kanin E, Jennings EG, Lee TI, True HL, Lander ES, Young RA. 2001. Remodeling of yeast genome expression in response to environmental changes. Mol Biol Cell 12:323-337.
8. Coleman CB, Gonzalez-Villalobos RA, Allen PL, Johanson K, Guevorkian K, Valles JM, Hammond TG. 2007. Diamagnetic levitation changes growth, cell cycle, and gene expression of Saccharomyces cerevisiae. Biotechnol Bioeng 98(4):854-863.
9. Croll T. 2001. Phase behaviour of the aqueous poly(ethylene glycol)-ficoll system for microencapsulation. Thesis. University of Queensland, Brisbane, Queensland, Australia.
10. Denegre JM, Valles JM, Jr., Lin K, Jordan WB, Mowry KL. 1998. Cleavage planes in frog eggs are altered by strong magnetic fields. Proc Natl Acad Sci USA 95(25):14729-14732.
11. Ford CL, Randal-Whitis L, Ellis SR. 1999. Yeast proteins related to the p40/laminin receptor precursor are required for 20S ribosomal RNA processing and the maturation of 40S ribosomal subunits. Cancer Res 59:704-710.
12. Giaever G, et al. 2002. Functional profiling of the Saccharomyces cerevisiae genome. Nature 418(6896):387-391.
13. Gietz RD, Sugino A. 1988. New yeast-Escherichia coli shuttle vectors constructed with in vitro mutagenized yeast genes lacking six-base pair restriction sites. Gene 74:527-534.
14. Glade N, Beaugnon E, Tabony J. 2006. Ground-based methods reproduce space-flight experiments and show that weak vibrations trigger microtubule self-organization. Biophys Chem 121(1):1-6.
15. Grier DG. 2003. A revolution in optical manipulation. Nature 424(6950):810-816.
16. Guevorkian K, Valles JM, Jr. 2006. Swimming Paramecium in magnetically simulated enhanced, reduced, and inverted gravity environments. PNAS 103(35):13051-13056.
17. Hammond TG, Lewis FC, Goodwin TJ, Linnehan RM, Wolf DA, Hire KP, Campbell WC, Benes E, O'Reilly KC, Globus RK, Kaysen JH. 1999. Gene expression in space. Nat Med 5(4):359.
18. Hammond TG, Benes E, O'Reilly KC, Wolf DA, Linnehan RM, Taher A, Kaysen JH, Allen PL, Goodwin TJ. 2000. Mechanical culture conditions effect gene expression: gravity-induced changes on the space shuttle. Physiol Genomics 3(3):163-173.
19. Hammond TG, Hammond JM. 2001. Optimized suspension culture - The rotating wall vessel. Am J Physiol - Renal Am J Physiol Renal Physiol 281(1):F12-F25.
20. Hughes-Fulford M. 2001. Changes in gene expression and signal transduction in microgravity. J Gravit Physiol 8(1):1-4.
21. Ikehata M, Iwasaka M, Miyakoshi J, ueno S, Koana T. 2003. Effects of intense magnetic fields on sedimentation and gene expression profile in budding yeast. J Appl Phys 93(10):6724-6726.
22. Johanson K, Allen PL, Lewis F, Cubano LA, Hyman LE, Hammond TG. 2002. Saccharomyces cerevisiae gene expression changes during rotating wall vessel suspension culture. J Appl Physiol 93(6):2171-2180.
23. Johanson K, Allen PL, Gonzalez-Villalobos RA, Baker CB, D'Elia R, Hammond TG. 2006. Gene expression and survival changes in Saccharomyces cerevisiae during suspension culture. Biotechnol Bioeng 93(6):1050-1059.
24. Johanson K, Allen PL, Gonzalez-Villalobos R, Nesbit J, Nickerson CA, Honer zu Bentrup K, Wilson JW, Ramamurthy R, D'Elia R, Muse KE, Freeman J, Stodieck LS, Hammond JS, Hammond TG. 2007. Haploid deletion strains of Saccharomyces cerevisiae that determine survival during space flight. Acta Astronaut 60(4-7):460-471.
25. Kandror O, Bretschneider N, Kreydin E, Cavalieri D, Goldberg AL. 2004. Yeast adapt to near-freezing temperatures by STRE/Msn2,4-dependent induction of trehalose synthesis and certain molecular chaperones. Mol Cell 13:771-781.
26. Lamm GM, Steinlein P, Cotton M, Christofori G. 1997. A rapid, quantitative and inexpensive method for detecting apoptosis by flow cytometry in transiently transfected cells. Nucleic Acids Res 25(23):4855-4857.
27. Lewis ML, Cubano LA, Zhao B, Dinh HK, Pabalan JG, Piepmeier EH, Bowman PD. 2001. cDNA microarray reveals altered cytoskeletal gene expression in space-flown leukemic T lymphocytes (Jurkat). FASEB 15(10):1783-1785.
28. Marchler G, Schuller C, Adam G, Ruis H. 1993. A Saccharomyces cerevisiae UAS element controlled by protein kinase A activates transcription in response to a variety of stress conditions. EMBO J 12:1997-2003.
29. Marion RM, Regev A, Segal E, Barash Y, Koller D, Friedman N, O'Shea EK. 2004. Sfp1 is a stress- and nutrient-sensitive regulator of ribosomal protein gene expression. PNAS 101(40):14315-14322.
30. Martinez-Pastor MT, Marchler G, Schuller C, Marchler Bauer A, Ruis H, Estruch F. 1996. The Saccharomyces cerevisiae zinc finger proteins Msn2p and Msn4p are required for transcriptional induction through the stress response element (STRE). EMBO J 15:2227-2235.
31. Molloy JE. 1998. Optical chopsticks: Digital synthesis of multiple optical traps. Methods Cell Biol 55:205-216.
32. Paul AL, Ferl RJ, Meisel MW. 2006. High magnetic field induced changes in gene expression in Arabidopsis. Biomagn Res Technol 4:7.
33. Purevdorj-Gage B, Sheehan KB, Hyman LE. 2006. Effects of low-shear modeled microgravity on cell function, gene expression, and phenotype in Saccharomyces cerevisiae. Appl Environ Microbiol 72(7):4569-4575.
34. Rodrigo PJ, Daria VR, Gluckstad J. 2004. Real-time three-dimensional optical micromanipulation of multiple particles and living cells. Opt Lett 29(19):2270-2272.
35. Schmitt AP, McEntee K. 1996. Msn2p, a zinc finger DNA-binding protein, is the transcriptional activator of the multistress response in Saccharomyces cerevisiae. PNAS 93:5777-5782.
36. Schneider D. 1999. Some levity in physics: Diamagnetism and floating frogs. American Scientist Online Volume 87.
37. Sheehan KB, McInnerney K, Purevdorj-Gage B, Altenburg SD, Hyman LE. 2007. Yeast genomic expression patterns in response to low-shear modeled microgravity. BMC Genomics 8(3):1-12.
38. Treger JM, Magee TR, McEntee K. 1998. Functional analysis of the stress response element and its role in the multistress response of Saccharomyces cerevisiae. Biochem Biophys Res Commun 243(1):13-19.
39. Valles JM, Jr. 2002. Model of magnetic field-induced mitotic apparatus reorientation in frog eggs. Biophys J 82(3):1260-1265.
40. Valles JM, Jr., Guevorkian K. 2002. Low gravity on earth by magnetic levitation of biological material. J Gravit Physiol 9(1):11-14.
41. Valles JM, Jr., Lin K, Denegre JM, Mowry KL. 1997. Stable magnetic field gradient levitation of Xenopus laevis: Toward low-gravity simulation. Biophys J 73(2):1130-1133.
42. Valles JM, Jr., Denegre JM, Mowry KL. 1998. Tales of bitter magnetism: Frog eggs, blood cells, pigeon feet, metal shreds and a sore head. Phys Today 51 11.
43. Valles JM, Jr., Maris HJ, Siedel GM, Tang J, Yao W. 2005. Magnetic levitation-based Martian and Lunar gravity simulator. Adv Space Res 36:114-118.
44. Winkleman A, Gudiksen KL, Ryan D, Whitesides GM, Greenfield D, Prentiss A. 2004. A magnetic trap for living cells suspended in a paramagnetic buffer. Appl Phys Lett 85(12):2411-2413.
45. Xu Z, Norris D. 1998. The SFP1 gene product of Saccharomyces cerevisiae regulates G2/M transitions during the mitotic cell cycle and DNA-damage response. Genetics 150:1419-1428.