Distribution of U3 small nucleolar RNA and fibrillarin during early embryogenesis in Caenorhabditis elegans

Biochimie

Volumn 90, Issue 6, 2008, Pages 898-907

  Sasano, Yumi ^a   Hokii, Yusuke ^b   Inoue, Kunio ^a   Sakamoto, Hiroshi ^a   Ushida, Chisato ^c   Fujiwara, Toshinobu ^a,d  

^a KOBE UNIVERSITY   (Japan)

^b IWATE UNIVERSITY   (Japan)

^c HIROSAKI UNIVERSITY   (Japan)

^d JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

Author keywords

C. elegans; Embryogenesis; Nucleologenesis; U3 snoRNA

Indexed keywords

FIBRILLARIN; GUANOSINE DERIVATIVE; SMALL NUCLEOLAR RNA;

ARTICLE; CAENORHABDITIS ELEGANS; EMBRYO DEVELOPMENT; GENE EXPRESSION; GENE SEQUENCE; IMMUNOPRECIPITATION; NONHUMAN; RNA ISOLATION;

ANIMALS; BASE SEQUENCE; CAENORHABDITIS ELEGANS; CAENORHABDITIS ELEGANS PROTEINS; CHROMOSOMAL PROTEINS, NON-HISTONE; EMBRYO, NONMAMMALIAN; MOLECULAR SEQUENCE DATA; RNA, HELMINTH; RNA, SMALL NUCLEOLAR;

CAENORHABDITIS ELEGANS; MAMMALIA;

EID: 44449085282     PISSN: 03009084     EISSN: 61831638     Source Type: Journal    
DOI: 10.1016/j.biochi.2008.02.001     Document Type: Article

References (41)

1. Fatica A., and Tollervey D. Making ribosomes. Curr. Opin. Cell Biol. 14 (2002) 313-318
2. Tschochner H., and Hurt E. Pre-ribosomes on the road from the nucleolus to the cytoplasm. Trends Cell Biol. 13 (2003) 255-263
3. Maxwell E.S., and Fournier M.J. The small nucleolar RNAs. Annu. Rev. Biochem. 64 (1995) 897-934
4. Smith C.M., and Steitz J.A. Sno storm in the nucleolus: new roles for myriad small RNPs. Cell 89 (1997) 669-672
5. Maden B.E., and Hughes J.M. Eukaryotic ribosomal RNA: the recent excitement in the nucleotide modification problem. Chromosoma 105 (1997) 391-400
6. Decatur W.A., and Fournier M.J. RNA-guided nucleotide modification of ribosomal and other RNAs. J. Biol. Chem. 278 (2003) 695-698
7. van Nues R.W., Venema J., Rientjes J.M., Dirks-Mulder A., and Raue H.A. Processing of eukaryotic pre-rRNA: the role of the transcribed spacers. Biochem. Cell Biol. 73 (1995) 789-801
8. Fromont-Racine M., Senger B., Saveanu C., and Fasiolo F. Ribosome assembly in eukaryotes. Gene 313 (2003) 17-42
9. Enright C.A., Maxwell E.S., Eliceiri G.L., and Sollner-Webb B. 5′ETS rRNA processing facilitated by four small RNAs: U14, E3, U17, and U3. RNA 2 (1996) 1094-1099
10. Kass S., Tyc K., Steitz J.A., and Sollner-Webb B. The U3 small nucleolar ribonucleoprotein functions in the first step of preribosomal RNA processing. Cell 60 (1990) 897-908
11. Beltrame M., and Tollervey D. Base pairing between U3 and the pre-ribosomal RNA is required for 18S rRNA synthesis. EMBO J. 14 (1995) 4350-4356
12. Hartshorne T. Distinct regions of U3 snoRNA interact at two sites within the 5′ external transcribed spacer of pre-rRNAs in Trypanosoma brucei cells. Nucleic Acids Res. 26 (1998) 2541-2553
13. Borovjagin A.V., and Gerbi S.A. Xenopus U3 snoRNA docks on pre-rRNA through a novel base-pairing interaction. RNA 10 (2004) 942-953
14. Mereau A., Fournier R., Gregoire A., Mougin A., Fabrizio P., Luhrmann R., and Branlant C. An in vivo and in vitro structure-function analysis of the Saccharomyces cerevisiae U3A snoRNP: protein-RNA contacts and base-pair interaction with the pre-ribosomal RNA. J. Mol. Biol. 273 (1997) 552-571
15. Dragon F., Gallagher J.E., Compagnone-Post P.A., Mitchell B.M., Porwancher K.A., Wehner K.A., Wormsley S., Settlage R.E., Shabanowitz J., Osheim Y., Beyer A.L., Hunt D.F., and Baserga S.J. A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis. Nature 417 (2002) 967-970
16. Grandi P., Rybin V., Bassler J., Petfalski E., Strauss D., Marzioch M., Schafer T., Kuster B., Tschochner H., Tollervey D., Gavin A.C., and Hurt E. 90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors. Mol. Cell 10 (2002) 105-115
17. Granneman S., Gallagher J.E., Vogelzangs J., Horstman W., van Venrooij W.J., Baserga S.J., and Pruijn G.J. The human Imp3 and Imp4 proteins form a ternary complex with hMpp10, which only interacts with the U3 snoRNA in 60-80S ribonucleoprotein complexes. Nucleic Acids Res. 31 (2003) 1877-1887
18. Jimenez-Garcia L.F., Segura-Valdez M.L., Ochs R.L., Rothblum L.I., Hannan R., and Spector D.L. Nucleologenesis: U3 snRNA-containing prenucleolar bodies move to sites of active pre-rRNA transcription after mitosis. Mol. Biol. Cell 5 (1994) 955-966
19. Brown D.D., and Littna E. Variations in the synthesis of stable RNA's during oogenesis and development of Xenopus laevis. J. Mol. Biol. 8 (1964) 688-695
20. Hay E.D., and Gurdon J.B. Fine structure of the nucleolus in normal and mutant Xenopus embryos. J. Cell Sci. 2 (1967) 151-162
21. Wallace H. Nucleolar growth and fusion during cellular differentiation. J. Morphol. 112 (1963) 261-278
22. Flechon J.E., and Kopecny V. The nature of the 'nucleolus precursor body' in early preimplantation embryos: a review of fine-structure cytochemical, immunocytochemical and autoradiographic data related to nucleolar function. Zygote 6 (1998) 183-191
23. Geuskens M., and Alexandre H. Ultrastructural and autoradiographic studies of nucleolar development and rDNA transcription in preimplantation mouse embryos. Cell Differ. 14 (1984) 125-134
24. Seydoux G., and Dunn M.A. Transcriptionally repressed germ cells lack a subpopulation of phosphorylated RNA polymerase II in early embryos of Caenorhabditis elegans and Drosophila melanogaster. Development 124 (1997) 2191-2201
25. Saijou E., Fujiwara T., Suzaki T., Inoue K., and Sakamoto H. RBD-1, a nucleolar RNA-binding protein, is essential for Caenorhabditis elegans early development through 18S ribosomal RNA processing. Nucleic Acids Res. 32 (2004) 1028-1036
26. Mottram J., Perry K.L., Lizardi P.M., Luhrmann R., Agabian N., and Nelson R.G. Isolation and sequence of four small nuclear U RNA genes of Trypanosoma brucei subsp. brucei: identification of the U2, U4, and U6 RNA analogs. Mol. Cell. Biol. 9 (1989) 1212-1223
27. Tabara H., Motohashi T., and Kohara Y. A multi-well version of in situ hybridization on whole mount embryos of Caenorhabditis elegans. Nucleic Acids Res. 24 (1996) 2119-2124
28. Terns M.P., and Dahlberg J.E. Retention and 5′ cap trimethylation of U3 snRNA in the nucleus. Science 264 (1994) 959-961
29. Terns M.P., Grimm C., Lund E., and Dahlberg J.E. A common maturation pathway for small nucleolar RNAs. EMBO J. 14 (1995) 4860-4871
30. Deng W., Zhu X., Skogerbo G., Zhao Y., Fu Z., Wang Y., He H., Cai L., Sun H., Liu C., Li B., Bai B., Wang J., Jia D., Sun S., He H., Cui Y., Wang Y., Bu D., and Chen R. Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression. Genome Res. 16 (2006) 20-29
31. Singh R., and Reddy R. Gamma-monomethyl phosphate: a cap structure in spliceosomal U6 small nuclear RNA. Proc. Natl. Acad. Sci. U.S.A. 86 (1989) 8280-8283
32. Yuan G., Klambt C., Bachellerie J.P., Brosius J., and Huttenhofer A. RNomics in Drosophila melanogaster: identification of 66 candidates for novel non-messenger RNAs. Nucleic Acids Res. 31 (2003) 2495-2507
33. Marmier-Gourrier N., Clery A., Senty-Segault V., Charpentier B., Schlotter F., Leclerc F., Fournier R., and Branlant C. A structural, phylogenetic, and functional study of 15.5-kD/Snu13 protein binding on U3 small nucleolar RNA. RNA 9 (2003) 821-838
34. Dobbyn H.C., and O'Keefe R.T. Analysis of Snu13p mutations reveals differential interactions with the U4 snRNA and U3 snoRNA. RNA 10 (2004) 308-320
35. Reichow S.L., Hamma T., Ferre-D'Amare A.R., and Varani G. The structure and function of small nucleolar ribonucleoproteins. Nucleic Acids Res. 35 (2007) 1452-1464
36. Terns M.P., and Terns R.M. Small nucleolar RNAs: versatile trans-acting molecules of ancient evolutionary origin. Gene Expr. 10 (2002) 17-39
37. Elela S.A., Igel H., and Ares Jr. M. RNase III cleaves eukaryotic preribosomal RNA at a U3 snoRNP-dependent site. Cell 85 (1996) 115-124
38. Hughes J.M. Functional base-pairing interaction between highly conserved elements of U3 small nucleolar RNA and the small ribosomal subunit RNA. J. Mol. Biol. 259 (1996) 645-654
39. Epstein P., Reddy R., and Busch H. Multiple states of U3 RNA in Novikoff hepatoma nucleoli. Biochemistry 23 (1984) 5421-5425
40. Medina F.J., Cerdido A., and Fernandez-Gomez M.E. Components of the nucleolar processing complex (Pre-rRNA, fibrillarin, and nucleolin) colocalize during mitosis and are incorporated to daughter cell nucleoli. Exp. Cell Res. 221 (1995) 111-125
41. Verheggen C., Almouzni G., and Hernandez-Verdun D. The ribosomal RNA processing machinery is recruited to the nucleolar domain before RNA polymerase I during Xenopus laevis development. J. Cell Biol. 149 (2000) 293-306