Characterizing complex peptide mixtures using a multi-dimensional liquid chromatography-mass spectrometry system: Saccharomyces cerevisiae as a model system

Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences

Volumn 810, Issue 1, 2004, Pages 69-76

  Maynard, Dawn M ^a,b,c   Masuda, Junichi ^a   Yang, Xiaoyu ^a   Kowalak, Jeffrey A ^a   Markey, Sanford P ^a  

^a NATIONAL INSTITUTE OF MENTAL HEALTH   (United States)

^b NATIONAL HUMAN GENOME RESEARCH INSTITUTE   (United States)

^c NATIONAL INSTITUTES OF HEALTH   (United States)

Author keywords

2D LC MS MS; DBParser; Multi dimensional LC MS; Peptide mixtures; S. cerevisiae; Sequence database records (SDRs)

Indexed keywords

DATABASE SYSTEMS; POSITIVE IONS; PROTEINS; YEAST;

PROTEIN DIGESTS; REVERSED PHASE (RP); STRONG CATION EXCHANGE (SCX);

LIQUID CHROMATOGRAPHY;

FUNGAL PROTEIN; PEPTIDE;

ACCURACY; AMINO ACID SEQUENCE; ARTICLE; AUTOANALYSIS; COMPLEX FORMATION; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; MODEL; MOLECULAR RECOGNITION; NONHUMAN; PEPTIDE ANALYSIS; PRIORITY JOURNAL; PROTEIN DETERMINATION; PROTEIN PROTEIN INTERACTION; REPRODUCIBILITY; SACCHAROMYCES CEREVISIAE; SEPARATION TECHNIQUE; SEQUENCE ANALYSIS; YEAST;

SACCHAROMYCES; SACCHAROMYCES CEREVISIAE;

EID: 4444379642     PISSN: 15700232     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1570-0232(04)00588-4     Document Type: Article

References (17)

1. A. Bauer, and B. Kuster Eur. J. Biochem. 270 2003 570
2. M. Dreger Eur. J. Biochem. 270 2003 589
3. J.M. Cronshaw, A.N. Krutchinsky, W. Zhang, B.T. Chait, and M.J. Matunis J. Cell Biol. 158 2002 915
4. J. Masuda, D.M. Maynard, M. Nishimura, T. Ueda, J.A. Kowalak, S.P. Markey, J. Chromatogr. A, submitted.
5. D.N. Perkins, D.J. Pappin, D.M. Creasy, and J.S. Cottrell Electrophoresis 20 1999 3551
6. X. Yang, V. Dondeti, R. Dezube, D.M. Maynard, S.P. Markey, L.Y. Geer, J. Epstein, X. Chen, J.A. Kowalak, J. Proteome Res., in press.
7. M.P. Washburn, D. Wolters, and J.R. Yates 3rd Nat. Biotechnol. 19 2001 242
8. J. Peng, J.E. Elias, C.C. Thoreen, L.J. Licklider, and S.P. Gygi J. Proteome Res. 2 2003 43
9. G. Rigaut, A. Shevchenko, B. Rutz, M. Wilm, M. Mann, and B. Seraphin Nat. Biotechnol. 17 1999 1030
10. D.G. Drubin, K.G. Miller, and D. Botstein J. Cell Biol. 107 1988 2551
11. http://www.mc.vanderbilt.edu/vumcdept/cellbio/gould/html/taptag.pdf.
12. M.P. Molloy, B.R. Herbert, B.J. Walsh, M.I. Tyler, M. Traini, J.C. Sanchez, D.F. Hochstrasser, K.L. Williams, and A.A. Gooley Electrophoresis 19 1998 837
13. http://www.biorad.com/LifeScience/pdf/Bulletin_9004.pdf.
14. K.L. Stone, K.R. Williams, in: P. Matsudaira (Ed.),Academic Press Inc., San Diego, 1993, p. 55.
15. T. Le Bihan, H.S. Duewel, and D. Figeys J. Am. Soc. Mass Spectrom. 14 2003 719
16. M.T. Davis, J. Beierle, E.T. Bures, M.D. McGinley, J. Mort, J.H. Robinson, C.S. Spahr, W. Yu, R. Luethy, and S.D. Patterson J. Chromatogr. B, Biomed. Sci. Appl. 752 2001 281
17. Y. Shen, J.M. Jacobs, D.G. Camp 2nd, R. Fang, R.J. Moore, R.D. Smith, W. Xiao, R.W. Davis, and R.G. Tompkins Anal. Chem. 76 2004 1134