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Volumn 339, Issue 1-2, 2004, Pages 189-198

A new pair of CR1-like LINE and tRNA-derived SINE elements in Podarcis sicula genome

Author keywords

Chicken repeat 1; Long interspersed repeat; Non long terminal repeat retrotransposon; Repetitive DNA; Reverse transcriptase; Short interspersed repeat

Indexed keywords

TRANSFER RNA;

EID: 4444326416     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2004.06.051     Document Type: Article
Times cited : (7)

References (37)
  • 1
    • 0037688034 scopus 로고    scopus 로고
    • The first non-LTR retrotransposon characterised in the cephalochordate amphioxus, BfCR1, shows similarities to CR1-like elements
    • R. Albalat, J. Permanyer, C. Canestro, A. Martinez-Mir, O. Gonzalez-Angulo, and R. Gonzalez-Duarte The first non-LTR retrotransposon characterised in the cephalochordate amphioxus, BfCR1, shows similarities to CR1-like elements Cell. Mol. Life Sci. 60 2003 803 809
    • (2003) Cell. Mol. Life Sci. , vol.60 , pp. 803-809
    • Albalat, R.1    Permanyer, J.2    Canestro, C.3    Martinez-Mir, A.4    Gonzalez-Angulo, O.5    Gonzalez-Duarte, R.6
  • 2
    • 0026053021 scopus 로고
    • Sequence conservation in avian CR1: An interspersed repetitive DNA family evolving under functional constraints
    • Z.Q. Chen, R.G. Ritzel, C.C. Lin, and R.B. Hodgetts Sequence conservation in avian CR1: an interspersed repetitive DNA family evolving under functional constraints Proc. Natl. Acad. Sci. U. S. A. 88 1991 5814 5818
    • (1991) Proc. Natl. Acad. Sci. U. S. A. , vol.88 , pp. 5814-5818
    • Chen, Z.Q.1    Ritzel, R.G.2    Lin, C.C.3    Hodgetts, R.B.4
  • 3
    • 0021101282 scopus 로고
    • A second major class of Alu family repeated DNA sequences in a primate genome
    • G.R. Daniels, and P.L. Deininger A second major class of Alu family repeated DNA sequences in a primate genome Nucleic Acids Res. 11 1983 7595 7610
    • (1983) Nucleic Acids Res. , vol.11 , pp. 7595-7610
    • Daniels, G.R.1    Deininger, P.L.2
  • 5
    • 0030995360 scopus 로고    scopus 로고
    • A retrotransposon of the non-long terminal repeat class from the human blood fluke Schistosoma mansoni. Similarities to the chicken-repeat-1-like elements of vertebrates
    • A.C. Drew, and P.J. Brindley A retrotransposon of the non-long terminal repeat class from the human blood fluke Schistosoma mansoni. Similarities to the chicken-repeat-1-like elements of vertebrates Mol. Biol. Evol. 14 1997 610 692
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 610-692
    • Drew, A.C.1    Brindley, P.J.2
  • 6
    • 0026862794 scopus 로고
    • Transposing without ends: The non-LTR retrotransposable elements
    • T.H. Eickbush Transposing without ends: the non-LTR retrotransposable elements New Biol. 4 1992 430 440
    • (1992) New Biol. , vol.4 , pp. 430-440
    • Eickbush, T.H.1
  • 7
    • 0035998315 scopus 로고    scopus 로고
    • A comparative analysis of invaded sequences from group IA phospholipase A2 provides evidence about the divergence period of genes groups and snake families
    • T.J. Fujimi, T. Tsuchiya, and T. Tamiya A comparative analysis of invaded sequences from group IA phospholipase A2 provides evidence about the divergence period of genes groups and snake families Toxicon 40 2002 873 884
    • (2002) Toxicon , vol.40 , pp. 873-884
    • Fujimi, T.J.1    Tsuchiya, T.2    Tamiya, T.3
  • 8
    • 0019883546 scopus 로고
    • Two conserved sequence blocks within eukaryotic tRNA genes are major promoter elements
    • G. Galli, H. Hofstetter, and M.L. Birnstiel Two conserved sequence blocks within eukaryotic tRNA genes are major promoter elements Nature 294 1981 626 631
    • (1981) Nature , vol.294 , pp. 626-631
    • Galli, G.1    Hofstetter, H.2    Birnstiel, M.L.3
  • 9
    • 0033017956 scopus 로고    scopus 로고
    • CORE-SINEs: Eukaryotic short interspersed retroposing elements with common sequence motifs
    • N. Gilbert, and D. Labuda CORE-SINEs: eukaryotic short interspersed retroposing elements with common sequence motifs Proc. Natl. Acad. Sci. U. S. A. 96 1999 2869 2874
    • (1999) Proc. Natl. Acad. Sci. U. S. A. , vol.96 , pp. 2869-2874
    • Gilbert, N.1    Labuda, D.2
  • 10
    • 0035819894 scopus 로고    scopus 로고
    • Subfamilies of CR1 non-LTR retrotransposon have different 5′ UTR sequences but are otherwise conserved
    • N.B. Haas, J.M. Grabowski, J. North, J.V. Moran, H.H. Kazazian, and J.B. Burch Subfamilies of CR1 non-LTR retrotransposon have different 5′ UTR sequences but are otherwise conserved Gene 265 2001 175 183
    • (2001) Gene , vol.265 , pp. 175-183
    • Haas, N.B.1    Grabowski, J.M.2    North, J.3    Moran, J.V.4    Kazazian, H.H.5    Burch, J.B.6
  • 12
    • 0034284437 scopus 로고    scopus 로고
    • Repbase update: A database and an electronic journal of repetitive elements
    • J. Jurka Repbase update: a database and an electronic journal of repetitive elements Trends Genet. 16 2000 418 420
    • (2000) Trends Genet. , vol.16 , pp. 418-420
    • Jurka, J.1
  • 13
    • 0030731154 scopus 로고    scopus 로고
    • Determination of the entire sequence of turtle CR1: The first open reading frame of the turtle CR1 element encodes a protein with a novel zinc finger motif
    • M. Kajikawa, K. Ohshima, and N. Okada Determination of the entire sequence of turtle CR1: the first open reading frame of the turtle CR1 element encodes a protein with a novel zinc finger motif Mol. Biol. Evol. 14 1997 1206 1217
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 1206-1217
    • Kajikawa, M.1    Ohshima, K.2    Okada, N.3
  • 14
    • 0027971434 scopus 로고
    • Cloning of the rhodopsin-encoding gene from the rod-less lizard Anolis carolinensis
    • S. Kawamura, and S. Yokoyama Cloning of the rhodopsin-encoding gene from the rod-less lizard Anolis carolinensis Gene 149 1994 267 270
    • (1994) Gene , vol.149 , pp. 267-270
    • Kawamura, S.1    Yokoyama, S.2
  • 15
    • 0029058441 scopus 로고
    • RNA template requirements for target DNA-primed reverse transcription by the R2 retrotransposable element
    • D.D. Luan, and T.H. Eickbush RNA template requirements for target DNA-primed reverse transcription by the R2 retrotransposable element Mol. Cell Biol. 15 1995 3882 3891
    • (1995) Mol. Cell Biol. , vol.15 , pp. 3882-3891
    • Luan, D.D.1    Eickbush, T.H.2
  • 16
    • 0027450385 scopus 로고
    • Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotransposition
    • D.D. Luan, M.H. Korman, J.L. Jakubczak, and T.H. Eickbush Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition Cell 72 1993 595 605
    • (1993) Cell , vol.72 , pp. 595-605
    • Luan, D.D.1    Korman, M.H.2    Jakubczak, J.L.3    Eickbush, T.H.4
  • 21
    • 0027258342 scopus 로고
    • Insertion of a 5′ truncated L1 element into the 3′ end of exon 44 of the dystrophin gene resulted in skipping of the exon during splicing in a case of Duchenne muscolar dystrophy
    • N. Narita, H. Nishio, Y. Kitoh, Y. Ishikawa, Y. Ishikawa, R. Minami, H. Nakamura, and M. Matsuo Insertion of a 5′ truncated L1 element into the 3′ end of exon 44 of the dystrophin gene resulted in skipping of the exon during splicing in a case of Duchenne muscolar dystrophy J. Clin. Invest. 91 1993 1862 1867
    • (1993) J. Clin. Invest. , vol.91 , pp. 1862-1867
    • Narita, N.1    Nishio, H.2    Kitoh, Y.3    Ishikawa, Y.4    Ishikawa, Y.5    Minami, R.6    Nakamura, H.7    Matsuo, M.8
  • 23
    • 0032862474 scopus 로고    scopus 로고
    • Retropositional parasitism of SINEs on LINEs: Identification of SINEs and LINEs in elasmobranchs
    • I. Ogiwara, M. Miya, K. Ohshima, and N. Okada Retropositional parasitism of SINEs on LINEs: identification of SINEs and LINEs in elasmobranchs Mol. Biol. Evol. 16 1999 1238 1250
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 1238-1250
    • Ogiwara, I.1    Miya, M.2    Ohshima, K.3    Okada, N.4
  • 24
    • 0029927086 scopus 로고    scopus 로고
    • The 3′ ends of tRNA-derived short interspersed repetitive elements are derived from the 3′ ends of long interspersed repetitive elements
    • K. Ohshima, M. Hamada, Y. Terai, and N. Okada The 3′ ends of tRNA-derived short interspersed repetitive elements are derived from the 3′ ends of long interspersed repetitive elements Mol. Cell Biol. 16 1996 3756 3764
    • (1996) Mol. Cell Biol. , vol.16 , pp. 3756-3764
    • Ohshima, K.1    Hamada, M.2    Terai, Y.3    Okada, N.4
  • 25
    • 0001414578 scopus 로고
    • SINEs: Short interspersed repeated elements of the eukaryotic genome
    • N. Okada SINEs: short interspersed repeated elements of the eukaryotic genome Trends Ecol. Evol. 6 1991 358 361
    • (1991) Trends Ecol. Evol. , vol.6 , pp. 358-361
    • Okada, N.1
  • 26
    • 0031027784 scopus 로고    scopus 로고
    • The 3′ ends of tRNA-derived SINEs originated from the 3′ ends of LINEs: A new example from the bovine genome
    • N. Okada, and M. Hamada The 3′ ends of tRNA-derived SINEs originated from the 3′ ends of LINEs: a new example from the bovine genome J. Mol. Evol. 44 1997 S52 S56
    • (1997) J. Mol. Evol. , vol.44
    • Okada, N.1    Hamada, M.2
  • 27
    • 0031593205 scopus 로고    scopus 로고
    • SINEs and LINEs share common 3′ sequences: A review
    • N. Okada, M. Hamada, I. Ogiwara, and K. Ohshima SINEs and LINEs share common 3′ sequences: a review Gene 205 1997 229 243
    • (1997) Gene , vol.205 , pp. 229-243
    • Okada, N.1    Hamada, M.2    Ogiwara, I.3    Ohshima, K.4
  • 28
    • 0034739808 scopus 로고    scopus 로고
    • A novel repeated sequence DNA originated from a Tc1-like transposon in water green frog Rana esculenta
    • G. Pontecorvo, B. De Felice, and M. Carfagna A novel repeated sequence DNA originated from a Tc1-like transposon in water green frog Rana esculenta Gene 261 2000 205 210
    • (2000) Gene , vol.261 , pp. 205-210
    • Pontecorvo, G.1    De Felice, B.2    Carfagna, M.3
  • 29
    • 0033580249 scopus 로고    scopus 로고
    • A LINE element from the pufferfish (fugu) Fugu rubripes which shows similarity to the CR1 family of non-LTR retrotransposon
    • R. Poulter, M. Butler, and J. Ormandy A LINE element from the pufferfish (fugu) Fugu rubripes which shows similarity to the CR1 family of non-LTR retrotransposon Gene 227 1999 169 179
    • (1999) Gene , vol.227 , pp. 169-179
    • Poulter, R.1    Butler, M.2    Ormandy, J.3
  • 30
    • 0024375274 scopus 로고
    • Evidence that chicken CR1 elements represent a novel family of retrotransposon
    • R. Silva, and J.B. Burch Evidence that chicken CR1 elements represent a novel family of retrotransposon Mol. Cell Biol. 9 1989 3563 3566
    • (1989) Mol. Cell Biol. , vol.9 , pp. 3563-3566
    • Silva, R.1    Burch, J.B.2
  • 31
    • 0030479536 scopus 로고    scopus 로고
    • The origin of interspersed repeats in the human genome
    • A.F.A. Smit The origin of interspersed repeats in the human genome Curr. Opin. Genet. Dev. 6 1996 743 748
    • (1996) Curr. Opin. Genet. Dev. , vol.6 , pp. 743-748
    • Smit, A.F.A.1
  • 32
    • 0021107150 scopus 로고
    • Characterization of deoxyribonucleic acid sequence at the 5′ and 3′ borders of the 100 kilobase pair ovalbumin gene domain
    • W.E. Stumph, M. Baez, W.G. Beattie, M.J. Tsai, and B.W. O'Malley Characterization of deoxyribonucleic acid sequence at the 5′ and 3′ borders of the 100 kilobase pair ovalbumin gene domain Biochemistry 22 1983 306 315
    • (1983) Biochemistry , vol.22 , pp. 306-315
    • Stumph, W.E.1    Baez, M.2    Beattie, W.G.3    Tsai, M.J.4    O'Malley, B.W.5
  • 33
    • 0028906536 scopus 로고
    • Bovine Alu-like sequences mediate transposition of a new site-specific retroelement
    • J. Szemraj, G. Plucienniczak, J. Jaworski, and A. Plucienniczak Bovine Alu-like sequences mediate transposition of a new site-specific retroelement Gene 152 1995 261 264
    • (1995) Gene , vol.152 , pp. 261-264
    • Szemraj, J.1    Plucienniczak, G.2    Jaworski, J.3    Plucienniczak, A.4
  • 34
    • 0031729939 scopus 로고    scopus 로고
    • SINE cousins: The 3′-end tails of two oldest and distantly related families of SINEs with the same genealogical origin
    • Y. Terai, K. Takahashi, and N. Okada SINE cousins: the 3′-end tails of two oldest and distantly related families of SINEs with the same genealogical origin Mol. Biol. Evol. 15 1998 1460 1471
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 1460-1471
    • Terai, Y.1    Takahashi, K.2    Okada, N.3
  • 35
    • 0037019824 scopus 로고    scopus 로고
    • LINEs and SINE-like elements of the protist Entamoeba histolytica
    • K. Van Dellen, J. Field, Z. Wang, B. Loftus, and J. Samuelson LINEs and SINE-like elements of the protist Entamoeba histolytica Gene 297 2002 229 239
    • (2002) Gene , vol.297 , pp. 229-239
    • Van Dellen, K.1    Field, J.2    Wang, Z.3    Loftus, B.4    Samuelson, J.5
  • 36
    • 0027987503 scopus 로고
    • Evolution of chicken repeat 1 (CR1): Evidences for ancient subfamilies and multiple progenitors
    • T.L. Vandergon, and M. Reitman Evolution of chicken repeat 1 (CR1): evidences for ancient subfamilies and multiple progenitors Mol. Biol. Evol. 11 1994 886 898
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 886-898
    • Vandergon, T.L.1    Reitman, M.2
  • 37
    • 0022555861 scopus 로고
    • Nonviral retroposons: Genes, pseudogenes, and transposable elements generated by the reverse flow of genetic information
    • A.M. Weiner, P.L. Deininger, and A. Efstratiadis Nonviral retroposons: genes, pseudogenes, and transposable elements generated by the reverse flow of genetic information Annu. Rev. Biochem. 55 1986 631 661
    • (1986) Annu. Rev. Biochem. , vol.55 , pp. 631-661
    • Weiner, A.M.1    Deininger, P.L.2    Efstratiadis, A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.