Molecular identification and characterization of an alginate-binding protein on the cell surface of Sphingomonas sp. A1

Biochemical and Biophysical Research Communications

Volumn 322, Issue 3, 2004, Pages 712-717

  He, Jinshan ^a   Nankai, Hirokazu ^a   Hashimoto, Wataru ^a   Murata, Kousaku ^a  

^a KYOTO UNIVERSITY   (Japan)

Author keywords

Alginate; Binding protein; Pit; Sphingomonas; Super channel

Indexed keywords

ABC TRANSPORTER; ALGINIC ACID; BINDING PROTEIN; POLYHYDROXYALKANOIC ACID;

ARTICLE; BACTERIAL CELL; BACTERIAL STRAIN; BIOSENSOR; CELL GROWTH; CELL SURFACE; CULTURE MEDIUM; CYTOPLASM; ESCHERICHIA COLI; EXTRACELLULAR SPACE; GENE OVEREXPRESSION; GENETIC CODE; GENOME; MACROMOLECULE; MEMBRANE; MOLECULAR BIOLOGY; MOLECULAR WEIGHT; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PRIORITY JOURNAL; PROTEIN PURIFICATION; SPHINGOMONAS; SURFACE PLASMON RESONANCE; WAUTERSIA EUTROPHA;

ESCHERICHIA COLI; RALSTONIA; SPHINGOMONAS; SPHINGOMONAS SP.; WAUTERSIA EUTROPHA;

EID: 4444297105     PISSN: 0006291X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbrc.2004.07.184     Document Type: Article

References (23)

1. D.C. White, S.D. Sutton, and D.B. Ringelberg The genus Sphingomonas: physiology and ecology Curr. Opin. Biotechnol. 7 1996 301 306
2. S. Kawasaki, R. Moriguchi, K. Sekiya, T. Nakai, E. Ono, K. Kume, and K. Kawahara The cell envelope structure of the lipopolysaccharide-lacking gram-negative bacterium Sphingomonas paucimobilis J. Bacteriol. 176 1994 284 290
3. W. Hashimoto, and K. Murata α-l-Rhamnosidase of Sphingomonas sp. R1 producing an unusual exopolysaccharide of sphingan Biosci. Biotechnol. Biochem. 62 1998 1068 1074
4. T. Hisano, Y. Yonemoto, T. Yamashita, Y. Fukuda, A. Kimura, and K. Murata Direct uptake of alginate molecules through a pit on the bacterial cell surface: a novel mechanism for the uptake of macromolecules J. Ferment. Bioeng. 79 1995 538 544
5. T. Hisano, N. Kimura, W. Hashimoto, and K. Murata Pit structure on bacterial cell surface Biochem. Biophys. Res. Commun. 220 1996 979 982
6. K. Momma, B. Mikami, Y. Mishima, W. Hashimoto, and K. Murata Crystal structure of AlgQ2, a macromolecule (alginate)-binding protein of Sphingomonas sp. A1 at 2.0 â., resolution J. Mol. Biol. 316 2002 1061 1069
7. Y. Mishima, K. Momma, W. Hashimoto, B. Mikami, and K. Murata Crystal structure of AlgQ2, a macromolecule (alginate)-binding protein of Sphingomonas sp. A1, complexed with an alginate tetrasaccharide at 1.6-â., resolution J. Biol. Chem. 278 2003 6552 6559
8. K. Momma, M. Okamoto, Y. Mishima, S. Mori, W. Hashimoto, and K. Murata A novel bacterial ATP-binding cassette (ABC) transporter system that allows uptake of macromolecules J. Bacteriol. 182 2000 3998 4004
9. W. Hashimoto, O. Miyake, K. Momma, S. Kawai, and K. Murata Molecular identification of oligoalginate lyase of Sphingomonas sp. strain A1 as one of the enzymes required for complete depolymerization of alginate J. Bacteriol. 182 2000 4572 4577
10. Y. Mishima, K. Momma, W. Hashimoto, B. Mikami, and K. Murata Super-channel in bacteria: function and structure of the macromolecule import system mediated by a pit-dependent ABC transporter FEMS Microbiol. Lett. 204 2001 215 221
11. W. Hashimoto, M. Yamasaki, T. Itoh, K. Momma, B. Mikami, K. Murata, Super-channel in bacteria: structural and functional aspects of a novel biosystem for the import and depolymerization of macromolecules, J. Biosci. Bioeng. (2004) in press
12. J. Sambrook, E.F. Fritsch, and T. Maniatis Molecular Cloning, A Laboratory Manual second ed. 1989 Cold Spring Harbor Laboratory Press Cold Spring Harbor, NY
13. S. Mizushima, and H. Yamada Isolation and characterization of two outer membrane preparations from Escherichia coli Biochim. Biophys. Acta 375 1975 44 53
14. U.K. Laemmli Cleavage of structural proteins during the assembly of the head of bacteriophage T4 Nature 227 1970 680 685
15. F. Sanger, S. Nicklen, and A.R. Coulson DNA sequencing with chain-terminating inhibitors Proc. Natl. Acad. Sci. USA 74 1977 5463 5467
16. K. Kimbara, T. Hashimoto, M. Fukuda, T. Koana, M. Takagi, M. Oishi, and K. Yano Cloning and sequencing of two tandem genes involved in degradation of 2,3-dihydroxybiphenyl to benzoic acid in the polychlorinated biphenyl-degrading soil bacterium Pseudomonas sp. strain KKS102 J. Bacteriol. 171 1989 2740 2747
17. G.B. Ruvkun, and F.M. Ausubel A general method for site-directed mutagenesis in prokaryotes Nature 289 1981 85 88
18. M.M. Bradford A rapid and sensitive method for the quantification of microgram quantities of protein utilizing the principle of protein-dye binding Anal. Biochem. 72 1976 248 254
19. J. Shine, and L. Dalgarno The 3′ terminal sequence of E. coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosomal binding sites Proc. Natl. Acad. Sci. USA 71 1974 1342 1346
20. D.K. Hawley, and W.R. McClure Comparison and analysis of Escherichia coli promoter DNA sequences Nucleic Acids Res. 11 1983 2237 2255
21. S.Z. Hanley, D.J. Pappin, D. Rahman, A.J. White, K.M. Elborough, and A.R. Slabas Re-evaluation of the primary structure of Ralstonia eutropha phasin and implications for polyhydroxyalkanoic acid granule binding FEBS Lett. 447 1999 99 105
22. M. Salanoubat, S. Genin, F. Artiguenave, J. Gouzy, S. Mangenot, M. Arlat, A. Billault, P. Brottier, J.C. Camus, L. Cattolico, M. Chandler, N. Choisne, C. Claudel-Renard, S. Cunnac, N. Demange, C. Gaspin, M. Lavie, A. Moisan, C. Robert, W. Saurin, T. Schiex, P. Siguier, P. Thebault, M. Whalen, P. Wincker, M. Levy, J. Weissenbach, and C.A. Boucher Genome sequence of the plant pathogen Ralstonia solanacearum Nature 415 2002 497 502
23. R. Wieczorek, A. Pries, A. Steinbüchel, and F. Mayer Analysis of a 24-kilodalton protein associated with the polyhydroxyalkanoic acid granules in Alcaligenes eutrophus J. Bacteriol. 177 1995 2425 2435