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Volumn 13, Issue 16, 2004, Pages 1785-1791

Rapid evolution of primate antiviral enzyme APOBEC3G

Author keywords

[No Author keywords available]

Indexed keywords

CYTIDINE DEAMINASE; VIF PROTEIN;

EID: 4444290423     PISSN: 09646906     EISSN: None     Source Type: Journal    
DOI: 10.1093/hmg/ddh183     Document Type: Article
Times cited : (135)

References (50)
  • 2
    • 0027183349 scopus 로고
    • Efficiency of viral DNA synthesis during infection of permissive and nonpermissive cells with vif-negative human immunodeficiency virus type 1
    • Sova, P. and Volsky, D.J. (1993). Efficiency of viral DNA synthesis during infection of permissive and nonpermissive cells with vif-negative human immunodeficiency virus type 1. J. Virol., 67, 6322-6326.
    • (1993) J. Virol. , vol.67 , pp. 6322-6326
    • Sova, P.1    Volsky, D.J.2
  • 3
    • 0031797865 scopus 로고    scopus 로고
    • An endogenous inhibitor of human immunodeficiency virus in human lymphocytes is overcome by the viral Vif protein
    • Madani, N. and Kabat, D. (1998) An endogenous inhibitor of human immunodeficiency virus in human lymphocytes is overcome by the viral Vif protein. J. Virol., 72, 10251-10255.
    • (1998) J. Virol. , vol.72 , pp. 10251-10255
    • Madani, N.1    Kabat, D.2
  • 4
    • 0031788565 scopus 로고    scopus 로고
    • Evidence for a newly discovered cellular anti-HIV-1 phenotype
    • Simon, J.H., Gaddis, N.C., Fouchier, R.A. and Malim, M.H. (1998) Evidence for a newly discovered cellular anti-HIV-1 phenotype. Nat. Med., 4, 1397-1400.
    • (1998) Nat. Med. , vol.4 , pp. 1397-1400
    • Simon, J.H.1    Gaddis, N.C.2    Fouchier, R.A.3    Malim, M.H.4
  • 5
    • 0037043699 scopus 로고    scopus 로고
    • Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral Vif protein
    • Sheehy, A.M., Gaddis, N.C. Choi, J.D. and Malim, M.H. (2002) Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral Vif protein. Nature, 418, 646-650.
    • (2002) Nature , vol.418 , pp. 646-650
    • Sheehy, A.M.1    Gaddis, N.C.2    Choi, J.D.3    Malim, M.H.4
  • 7
    • 0038363470 scopus 로고    scopus 로고
    • Hypermutation of HIV-1 DNA in the absence of the Vif protein
    • Lecossier, D., Bouchonnet, F., Clavel, F. and Hance, A.J. (2003) Hypermutation of HIV-1 DNA in the absence of the Vif protein. Science, 300, 1112.
    • (2003) Science , vol.300 , pp. 1112
    • Lecossier, D.1    Bouchonnet, F.2    Clavel, F.3    Hance, A.J.4
  • 8
    • 0038681023 scopus 로고    scopus 로고
    • Broad antiretroviral defence by human APOBEC3G through lethal editing of nascent reverse transcripts
    • Mangeat, B., Turelli, P., Caron, G., Friedli, M., Perrin, L. and Trono, D. (2003) Broad antiretroviral defence by human APOBEC3G through lethal editing of nascent reverse transcripts. Nature, 424, 99-103.
    • (2003) Nature , vol.424 , pp. 99-103
    • Mangeat, B.1    Turelli, P.2    Caron, G.3    Friedli, M.4    Perrin, L.5    Trono, D.6
  • 9
    • 0038004471 scopus 로고    scopus 로고
    • The cytidine deaminase CEM15 induces hypermutation in newly synthesized HIV-1 DNA
    • Zhang, H., Yang, B., Pomerantz, R.J., Zhang, C., Arunachalam, S.C. and Gao, L. (2003) The cytidine deaminase CEM15 induces hypermutation in newly synthesized HIV-1 DNA. Nature, 424, 94-98.
    • (2003) Nature , vol.424 , pp. 94-98
    • Zhang, H.1    Yang, B.2    Pomerantz, R.J.3    Zhang, C.4    Arunachalam, S.C.5    Gao, L.6
  • 10
    • 0038264235 scopus 로고    scopus 로고
    • Good to CU
    • Gu, Y. and Sundquist, W.I. (2003) Good to CU. Nature, 424, 21-22.
    • (2003) Nature , vol.424 , pp. 21-22
    • Gu, Y.1    Sundquist, W.I.2
  • 12
    • 0141638436 scopus 로고    scopus 로고
    • HIV-1 Vif blocks the antiviral activity of APOBEC3G by impairing both its translation and intracellular stability
    • Stopak, K., de Noronha, C. Yonemoto, W. and Greene, W.C. (2003). HIV-1 Vif blocks the antiviral activity of APOBEC3G by impairing both its translation and intracellular stability. Mol. Cell., 12, 591-601.
    • (2003) Mol. Cell. , vol.12 , pp. 591-601
    • Stopak, K.1    de Noronha, C.2    Yonemoto, W.3    Greene, W.C.4
  • 13
    • 0344413641 scopus 로고    scopus 로고
    • The antiretroviral enzyme APOBEC3G is degraded by the proteasome in response to HIV-1 Vif
    • Sheehy, A.M., Gaddis, N.C. and Malim, M.H. (2003) The antiretroviral enzyme APOBEC3G is degraded by the proteasome in response to HIV-1 Vif. Nat. Med., 9, 1404-1407.
    • (2003) Nat. Med. , vol.9 , pp. 1404-1407
    • Sheehy, A.M.1    Gaddis, N.C.2    Malim, M.H.3
  • 14
    • 0242578406 scopus 로고    scopus 로고
    • Induction of APOBEC3G ubiquitination and degradation by an HIV-1 Vif-Cul5-SCF complex
    • Yu, X., Yu, Y., Liu, B., Luo, K., Kong, W., Mao, P. and Yu, X.F. (2003) Induction of APOBEC3G ubiquitination and degradation by an HIV-1 Vif-Cul5-SCF complex. Science, 302, 1056-1060.
    • (2003) Science , vol.302 , pp. 1056-1060
    • Yu, X.1    Yu, Y.2    Liu, B.3    Luo, K.4    Kong, W.5    Mao, P.6    Yu, X.F.7
  • 15
    • 0242709301 scopus 로고    scopus 로고
    • The Vif protein of HIV triggers degradation of the human antiretroviral DNA deaminase APOBEC3G
    • Conticello, S.G., Harris, R.S. and Neuberger, M.S. (2003) The Vif protein of HIV triggers degradation of the human antiretroviral DNA deaminase APOBEC3G. Curr. Biol., 13, 2009-2013.
    • (2003) Curr. Biol. , vol.13 , pp. 2009-2013
    • Conticello, S.G.1    Harris, R.S.2    Neuberger, M.S.3
  • 16
    • 0842347676 scopus 로고    scopus 로고
    • Influence of primate lentiviral Vif and proteasome inhibitors on human immunodeficiency virus type 1 virion packaging of APOBEC3G
    • Liu, B., Yu, X., Luo, K., Yu, Y. and Yu, X.F. (2004) Influence of primate lentiviral Vif and proteasome inhibitors on human immunodeficiency virus type 1 virion packaging of APOBEC3G. J. Virol., 78, 2072-2081.
    • (2004) J. Virol. , vol.78 , pp. 2072-2081
    • Liu, B.1    Yu, X.2    Luo, K.3    Yu, Y.4    Yu, X.F.5
  • 17
    • 1542379821 scopus 로고    scopus 로고
    • Vif overcomes the innate antiviral activity of APOBEC3G by promoting its degradation in the ubiquitin-proteasome pathway
    • Mehle, A., Strack, B., Ancuta, P., Zhang, C., McPike, M. and Gabuzda, D. (2004) Vif overcomes the innate antiviral activity of APOBEC3G by promoting its degradation in the ubiquitin-proteasome pathway. J. Biol. Chem., 279, 7792-7798.
    • (2004) J. Biol. Chem. , vol.279 , pp. 7792-7798
    • Mehle, A.1    Strack, B.2    Ancuta, P.3    Zhang, C.4    McPike, M.5    Gabuzda, D.6
  • 19
    • 0002027029 scopus 로고
    • A new evolutionary law
    • Van Valen, L. (1973) A new evolutionary law. Evol. Theor., 1, 1-30.
    • (1973) Evol. Theor. , vol.1 , pp. 1-30
    • Van Valen, L.1
  • 20
    • 0041884768 scopus 로고    scopus 로고
    • Widespread adaptive evolution in the human immunodeficiency virus type 1 genome
    • Yang, W., Bielawski, J.P. and Yang, Z. (2003) Widespread adaptive evolution in the human immunodeficiency virus type 1 genome. J. Mol. Evol., 57, 212-221.
    • (2003) J. Mol. Evol. , vol.57 , pp. 212-221
    • Yang, W.1    Bielawski, J.P.2    Yang, Z.3
  • 22
    • 0345270035 scopus 로고    scopus 로고
    • Messenger RNA editing in mammals: New members of the APOBEC family seeking roles in the family business
    • Wedekind, J.E., Dance, G.S., Sowden, M.P. and Smith, H.C. (2003). Messenger RNA editing in mammals: new members of the APOBEC family seeking roles in the family business. Trends Genet., 19, 207-216.
    • (2003) Trends Genet. , vol.19 , pp. 207-216
    • Wedekind, J.E.1    Dance, G.S.2    Sowden, M.P.3    Smith, H.C.4
  • 23
    • 0031306932 scopus 로고    scopus 로고
    • Small-sample tests of episodic adaptive evolution: A case study of primate lysozymes
    • Zhang, J., Kumar, S. and Nei, M. (1997) Small-sample tests of episodic adaptive evolution: a case study of primate lysozymes. Mol. Biol. Evol., 14, 1335-1338.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 1335-1338
    • Zhang, J.1    Kumar, S.2    Nei, M.3
  • 24
    • 0032584099 scopus 로고    scopus 로고
    • Positive Darwinian selection after gene duplication in primate ribonuclease genes
    • Zhang, J., Rosenberg, H.F. and Nei, M. (1998) Positive Darwinian selection after gene duplication in primate ribonuclease genes. Proc. Natl Acad. Sci. USA, 95, 3708-3713.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 3708-3713
    • Zhang, J.1    Rosenberg, H.F.2    Nei, M.3
  • 25
    • 0036213175 scopus 로고    scopus 로고
    • Diversifying selection of the tumor-growth promoter angiogenin in primate evolution
    • Zhang, J. and Rosenberg, H.F. (2002) Diversifying selection of the tumor-growth promoter angiogenin in primate evolution. Mol. Biol. Evol., 19, 438-445.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 438-445
    • Zhang, J.1    Rosenberg, H.F.2
  • 26
    • 0003421005 scopus 로고    scopus 로고
    • Sinauer Associates, Sunderland, MA
    • Li, W.H. (1997). Molecular Evolution. Sinauer Associates, Sunderland, MA, pp. 221-224.
    • (1997) Molecular Evolution , pp. 221-224
    • Li, W.H.1
  • 27
    • 0031897964 scopus 로고    scopus 로고
    • Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution
    • Yang, Z. (1998) Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution. Mol. Biol. Evol., 15, 568-573.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 568-573
    • Yang, Z.1
  • 28
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima, F. (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123, 585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 29
    • 0027453041 scopus 로고
    • Statistical tests of neutrality of mutations
    • Fu, Y.X. and Li, W.H. (1993) Statistical tests of neutrality of mutations. Genetics, 133, 693-709.
    • (1993) Genetics , vol.133 , pp. 693-709
    • Fu, Y.X.1    Li, W.H.2
  • 30
    • 0036262851 scopus 로고    scopus 로고
    • Distinguishing between selection and population expansion in an experimental lineage of bacteriophage T7
    • Hahn, M.W., Rausher, M.D. and Cunningham, C.W. (2002) Distinguishing between selection and population expansion in an experimental lineage of bacteriophage T7. Genetics, 161, 11-20.
    • (2002) Genetics , vol.161 , pp. 11-20
    • Hahn, M.W.1    Rausher, M.D.2    Cunningham, C.W.3
  • 31
    • 0026428610 scopus 로고
    • Adaptive protein evolution at the Adh locus in Drosophila
    • McDonald, J.H. and Kreitman, M. (1991) Adaptive protein evolution at the Adh locus in Drosophila. Nature, 351, 652-654.
    • (1991) Nature , vol.351 , pp. 652-654
    • McDonald, J.H.1    Kreitman, M.2
  • 32
    • 0025147562 scopus 로고
    • Positive Darwinian selection promotes charge profile diversity in the antigen-binding cleft of class 1 major-histocompatibility-complex molecules
    • Hughes, A.L., Ota, T. and Nei, M. (1990) Positive Darwinian selection promotes charge profile diversity in the antigen-binding cleft of class 1 major-histocompatibility-complex molecules. Mol. Biol. Evol., 7, 515-524.
    • (1990) Mol. Biol. Evol. , vol.7 , pp. 515-524
    • Hughes, A.L.1    Ota, T.2    Nei, M.3
  • 33
    • 0036544871 scopus 로고    scopus 로고
    • Adaptive evolution of a duplicated pancreatic ribonuclease gene in a leaf-eating monkey
    • Zhang, J., Zhang, Y.P. and Rosenberg, H.F. (2002) Adaptive evolution of a duplicated pancreatic ribonuclease gene in a leaf-eating monkey. Nat. Genet., 30, 411-415.
    • (2002) Nat. Genet. , vol.30 , pp. 411-415
    • Zhang, J.1    Zhang, Y.P.2    Rosenberg, H.F.3
  • 34
    • 0033921902 scopus 로고    scopus 로고
    • Rates of conservative and radical nonsynonymous nucleotide substitutions in mammalian nuclear genes
    • Zhang, J. (2000) Rates of conservative and radical nonsynonymous nucleotide substitutions in mammalian nuclear genes. J. Mol. Evol., 50, 56-68.
    • (2000) J. Mol. Evol. , vol.50 , pp. 56-68
    • Zhang, J.1
  • 36
    • 0342378081 scopus 로고    scopus 로고
    • Naturally occurring hepatitis B virus genomes bearing the hallmarks of retroviral G → A hypermutation
    • Gunther, S., Sommer, G., Plikat, U., Iwanska, A., Wain-Hobson, S., Will, H. and Meyerhans, A. (1997) Naturally occurring hepatitis B virus genomes bearing the hallmarks of retroviral G → A hypermutation. Virology, 235, 104-108.
    • (1997) Virology , vol.235 , pp. 104-108
    • Gunther, S.1    Sommer, G.2    Plikat, U.3    Iwanska, A.4    Wain-Hobson, S.5    Will, H.6    Meyerhans, A.7
  • 37
    • 1642308939 scopus 로고    scopus 로고
    • Inhibition of hepatitis B virus replication by APOBEC3G
    • Turelli, P., Mangeat, B., Jost, S., Vianin, S. and Trono, D. (2004) Inhibition of hepatitis B virus replication by APOBEC3G. Science, 303, 1829.
    • (2004) Science , vol.303 , pp. 1829
    • Turelli, P.1    Mangeat, B.2    Jost, S.3    Vianin, S.4    Trono, D.5
  • 38
    • 1642380210 scopus 로고    scopus 로고
    • A single amino acid of APOBEC3G controls its species-specific interaction with virion infectivity factor (Vif)
    • Schröfelbauer, B., Chen, D. and Landau, N.R. (2004) A single amino acid of APOBEC3G controls its species-specific interaction with virion infectivity factor (Vif). Proc. Natl Acad. Sci. USA, 101, 3927-3932.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 3927-3932
    • Schröfelbauer, B.1    Chen, D.2    Landau, N.R.3
  • 39
    • 2442511993 scopus 로고    scopus 로고
    • A single amino acid determinant governs the species-specific sensitivity of APOBEC3G to Vif action
    • Mangeat, B., Turelli, P., Liao, S. and Trono, D. (2004) A single amino acid determinant governs the species-specific sensitivity of APOBEC3G to Vif action. J. Biol. Chem., 279, 14481-14483.
    • (2004) J. Biol. Chem. , vol.279 , pp. 14481-14483
    • Mangeat, B.1    Turelli, P.2    Liao, S.3    Trono, D.4
  • 40
    • 1842732157 scopus 로고    scopus 로고
    • A single amino acid substitution in human APOBEC3G antiretroviral enzyme confers resistance to HIV-1 virion infectivity factor-induced depletion
    • Xu, H., Svarovskaia, E.S., Barr, R., Zhang, Y., Khan, M.A., Strebel, K. and Pathak, V.K. A single amino acid substitution in human APOBEC3G antiretroviral enzyme confers resistance to HIV-1 virion infectivity factor-induced depletion. Proc. Natl Acad. Sci. USA, 101, 5652-5657.
    • Proc. Natl. Acad. Sci. USA , vol.101 , pp. 5652-5657
    • Xu, H.1    Svarovskaia, E.S.2    Barr, R.3    Zhang, Y.4    Khan, M.A.5    Strebel, K.6    Pathak, V.K.7
  • 41
    • 1642367210 scopus 로고    scopus 로고
    • A single amino acid difference in the host APOBEC3G protein controls the primate species specificity of HIV type 1 virion infectivity factor
    • Bogerd, H.P., Doehle, B.P., Wiegand, H.L. and Cullen, B.R. (2004) A single amino acid difference in the host APOBEC3G protein controls the primate species specificity of HIV type 1 virion infectivity factor. Proc. Natl Acad. Sci. USA, 101, 3770-3774.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 3770-3774
    • Bogerd, H.P.1    Doehle, B.P.2    Wiegand, H.L.3    Cullen, B.R.4
  • 45
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F. and Higgins, D.G. (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl. Acids Res., 25, 4876-4882.
    • (1997) Nucl. Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 46
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. and Nei, M. (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol., 4, 406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 47
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein, J. (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution, 39, 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 48
    • 0036139211 scopus 로고    scopus 로고
    • MEGA2: Molecular evolutionary genetics analysis software
    • Kumar, S., Tamura, K., Jakobsen, I. and Nei, M. (2001) MEGA2: molecular evolutionary genetics analysis software. Bioinformatics, 17, 1244-1245.
    • (2001) Bioinformatics , vol.17 , pp. 1244-1245
    • Kumar, S.1    Tamura, K.2    Jakobsen, I.3    Nei, M.4
  • 49
    • 0031025677 scopus 로고    scopus 로고
    • Accuracies of ancestral amino acid sequences inferred by the parsimony, likelihood, and distance methods
    • Zhang, J. and Nei, M. (1997) Accuracies of ancestral amino acid sequences inferred by the parsimony, likelihood, and distance methods. J. Mol. Evol., 44 (Suppl. 1), S139-S146.
    • (1997) J. Mol. Evol. , vol.44 , Issue.SUPPL. 1
    • Zhang, J.1    Nei, M.2
  • 50
    • 0347513220 scopus 로고    scopus 로고
    • DnaSP, DNA polymorphism analyses by the coalescent and other methods
    • Rozas, J., Sánchez-DelBarrio, J.C., Messeguer, X. and Rozas, R. (2003) DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics, 19, 2496-2497.
    • (2003) Bioinformatics , vol.19 , pp. 2496-2497
    • Rozas, J.1    Sánchez-DelBarrio, J.C.2    Messeguer, X.3    Rozas, R.4


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